Plxnb1 (plexin B1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Plxnb1 (plexin B1) Rattus norvegicus
Analyze
Symbol: Plxnb1
Name: plexin B1
RGD ID: 1310564
Description: Predicted to enable GTPase activating protein binding activity and semaphorin receptor activity. Predicted to be involved in several processes, including negative regulation of osteoblast proliferation; nervous system development; and positive regulation of intracellular signal transduction. Is active in glutamatergic synapse and postsynaptic membrane. Orthologous to human PLXNB1 (plexin B1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102555419; LOC316009; plexin-B1; uncharacterized LOC102555419
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,621,961 - 118,647,491 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8118,623,040 - 118,647,489 (+)EnsemblGRCr8
mRatBN7.28109,743,470 - 109,769,153 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,744,697 - 109,769,027 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8115,359,481 - 115,383,860 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,558,656 - 113,583,035 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,401,462 - 111,425,841 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,832,826 - 117,858,515 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,836,701 - 117,856,689 (+)Ensemblrn6Rnor6.0
Rnor_5.08117,184,493 - 117,210,265 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48114,109,955 - 114,133,875 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8109,034,715 - 109,060,199 (+)NCBICelera
RGSC_v3.18114,133,688 - 114,152,415 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-Zearalanol  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
butanal  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diuron  (EXP)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
inulin  (ISO)
methotrexate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
okadaic acid  (ISO)
organophosphorus compound  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
temozolomide  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Sema4D-plexin-B1 implicated in regulation of dendritic spine density through RhoA/ROCK pathway. Lin X, etal., Neurosci Lett. 2007 Nov 20;428(1):1-6. doi: 10.1016/j.neulet.2007.09.045. Epub 2007 Sep 29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:14732713   PMID:15218527   PMID:15297673   PMID:15330859   PMID:16188938   PMID:19788569   PMID:19843518   PMID:22019888   PMID:23699507   PMID:26489627   PMID:28624895  
PMID:29981480   PMID:35236339  


Genomics

Comparative Map Data
Plxnb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,621,961 - 118,647,491 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8118,623,040 - 118,647,489 (+)EnsemblGRCr8
mRatBN7.28109,743,470 - 109,769,153 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,744,697 - 109,769,027 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8115,359,481 - 115,383,860 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,558,656 - 113,583,035 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,401,462 - 111,425,841 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,832,826 - 117,858,515 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,836,701 - 117,856,689 (+)Ensemblrn6Rnor6.0
Rnor_5.08117,184,493 - 117,210,265 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48114,109,955 - 114,133,875 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8109,034,715 - 109,060,199 (+)NCBICelera
RGSC_v3.18114,133,688 - 114,152,415 (+)NCBI
Cytogenetic Map8q32NCBI
PLXNB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38348,403,854 - 48,430,310 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl348,403,849 - 48,430,499 (-)Ensemblhg38GRCh38
GRCh37348,445,261 - 48,471,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,420,267 - 48,441,746 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34348,420,266 - 48,441,746NCBI
Celera348,396,031 - 48,422,232 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef348,499,564 - 48,525,765 (-)NCBIHuRef
CHM1_1348,397,545 - 48,423,744 (-)NCBICHM1_1
T2T-CHM13v2.0348,431,864 - 48,458,348 (-)NCBIT2T-CHM13v2.0
Plxnb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,922,915 - 108,948,983 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,924,457 - 108,948,985 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389109,093,849 - 109,119,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9109,095,389 - 109,119,917 (+)Ensemblmm10GRCm38
MGSCv379108,997,950 - 109,022,429 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369108,952,998 - 108,977,317 (+)NCBIMGSCv36mm8
Celera9108,654,084 - 108,678,637 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.63NCBI
Plxnb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955532474,354 - 494,527 (-)Ensembl
ChiLan1.0NW_004955532471,652 - 499,525 (-)NCBIChiLan1.0ChiLan1.0
PLXNB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2248,378,705 - 48,404,939 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1348,383,473 - 48,409,713 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0348,325,892 - 48,352,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1349,408,666 - 49,434,912 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,408,666 - 49,434,913 (-)EnsemblpanPan2panpan1.1
PLXNB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,658,938 - 40,685,219 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,661,772 - 40,684,265 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2040,576,434 - 40,601,945 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02041,144,331 - 41,169,843 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,145,066 - 41,169,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12040,382,740 - 40,410,636 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,786,338 - 40,811,847 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,067,071 - 41,092,583 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plxnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,437,337 - 63,468,607 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529200,210 - 221,227 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936529197,834 - 226,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,113,914 - 31,140,220 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11331,113,910 - 31,140,133 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,286,059 - 34,293,379 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLXNB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1229,805,358 - 9,833,102 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl229,806,907 - 9,827,640 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041157,258,775 - 157,286,207 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxnb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247302,371,147 - 2,391,308 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247302,368,329 - 2,396,284 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Plxnb1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18100,368,722 - 100,388,642 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plxnb1
349 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:58
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000043345
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
BE110100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,767,885 - 109,768,094 (+)MAPPERmRatBN7.2
Rnor_6.08117,857,253 - 117,857,461NCBIRnor6.0
Rnor_5.08117,208,998 - 117,209,206UniSTSRnor5.0
RGSC_v3.48114,132,731 - 114,132,939UniSTSRGSC3.4
Celera8109,058,937 - 109,059,145UniSTS
RH 3.4 Map81114.79UniSTS
Cytogenetic Map8q32UniSTS
AI112406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,768,881 - 109,769,063 (+)MAPPERmRatBN7.2
Rnor_6.08117,858,249 - 117,858,430NCBIRnor6.0
Rnor_5.08117,209,994 - 117,210,175UniSTSRnor5.0
RGSC_v3.48114,133,727 - 114,133,908UniSTSRGSC3.4
Celera8109,059,933 - 109,060,114UniSTS
Cytogenetic Map8q32UniSTS
BF411491  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88118,640,691 - 118,640,864 (+)Marker Load Pipeline
mRatBN7.28109,762,229 - 109,762,402 (+)MAPPERmRatBN7.2
Rnor_6.08117,851,597 - 117,851,769NCBIRnor6.0
Rnor_5.08117,203,342 - 117,203,514UniSTSRnor5.0
RGSC_v3.48114,127,075 - 114,127,247UniSTSRGSC3.4
Celera8109,053,281 - 109,053,453UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 86 59 6 350 186 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000043345   ⟹   ENSRNOP00000048230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8118,623,161 - 118,647,489 (+)Ensembl
mRatBN7.2 Ensembl8109,744,697 - 109,769,027 (+)Ensembl
Rnor_6.0 Ensembl8117,836,701 - 117,856,689 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172966   ⟹   ENSRNOP00000100942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8118,623,040 - 118,647,489 (+)Ensembl
RefSeq Acc Id: NM_001108188   ⟹   NP_001101658
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,623,161 - 118,647,491 (+)NCBI
mRatBN7.28109,744,697 - 109,769,029 (+)NCBI
RefSeq Acc Id: XM_006243883   ⟹   XP_006243945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,621,961 - 118,647,491 (+)NCBI
mRatBN7.28109,743,470 - 109,769,153 (+)NCBI
Rnor_6.08117,832,826 - 117,858,515 (+)NCBI
Rnor_5.08117,184,493 - 117,210,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243884   ⟹   XP_006243946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,625,784 - 118,647,491 (+)NCBI
mRatBN7.28109,747,303 - 109,769,153 (+)NCBI
Rnor_6.08117,836,621 - 117,858,515 (+)NCBI
Rnor_5.08117,184,493 - 117,210,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243885   ⟹   XP_006243947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,622,360 - 118,647,491 (+)NCBI
mRatBN7.28109,743,846 - 109,769,153 (+)NCBI
Rnor_6.08117,833,078 - 117,858,515 (+)NCBI
Rnor_5.08117,184,493 - 117,210,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081604   ⟹   XP_038937532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,623,902 - 118,647,491 (+)NCBI
mRatBN7.28109,745,427 - 109,769,153 (+)NCBI
RefSeq Acc Id: XM_039081605   ⟹   XP_038937533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,623,008 - 118,647,491 (+)NCBI
mRatBN7.28109,744,511 - 109,769,153 (+)NCBI
RefSeq Acc Id: XM_039081606   ⟹   XP_038937534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,631,274 - 118,647,491 (+)NCBI
mRatBN7.28109,752,809 - 109,769,153 (+)NCBI
RefSeq Acc Id: XP_006243945   ⟸   XM_006243883
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243947   ⟸   XM_006243885
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243946   ⟸   XM_006243884
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048230   ⟸   ENSRNOT00000043345
RefSeq Acc Id: XP_038937533   ⟸   XM_039081605
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001101658   ⟸   NM_001108188
- Peptide Label: precursor
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937532   ⟸   XM_039081604
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937534   ⟸   XM_039081606
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000100942   ⟸   ENSRNOT00000172966
Protein Domains
Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDX5-F1-model_v2 AlphaFold D3ZDX5 1-2121 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310564 AgrOrtholog
BioCyc Gene G2FUF-29090 BioCyc
Ensembl Genes ENSRNOG00000029510 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043345 ENTREZGENE
  ENSRNOT00000043345.7 UniProtKB/TrEMBL
  ENSRNOT00000172966 ENTREZGENE
  ENSRNOT00000172966.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  GTPase Activation - p120gap, domain 1 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  PSI_Plexin-B UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/TrEMBL
  TIG2_plexin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
NCBI Gene 316009 ENTREZGENE
PANTHER PLEXIN-B1 UniProtKB/TrEMBL
  PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  PSI_Plexin-B UniProtKB/TrEMBL
  PSI_PlexinA-B UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
  TIG_2 UniProtKB/TrEMBL
  TIG_plexin UniProtKB/TrEMBL
PhenoGen Plxnb1 PhenoGen
PROSITE SEMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029510 RatGTEx
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
  Plexin repeat UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
UniProt A0ABK0LGI1_RAT UniProtKB/TrEMBL
  D3ZDX5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Plxnb1  plexin B1  LOC102555419  uncharacterized LOC102555419  Data merged from RGD:7577354 737654 PROVISIONAL
2013-12-18 LOC102555419  uncharacterized LOC102555419      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Plxnb1  plexin B1   Plxnb1_predicted  plexin B1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Plxnb1_predicted  plexin B1 (predicted)      Symbol and Name status set to approved 70820 APPROVED