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Gene: Zfp787 (zinc finger protein 787) Rattus norvegicus

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Symbol:

Zfp787

Name:

zinc finger protein 787

RGD ID:

1310536

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF787 (zinc finger protein 787); INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC365176; RGD1310536; similar to TTF-I interacting peptide 20; TIP20; Transcription Termination Factor I Interacting Peptide 20; Znf787

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF787 (zinc finger protein 787)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Zfp787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf787 (zinc finger protein 787)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zfp787 (zinc finger protein 787)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF787 (zinc finger protein 787)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1233	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	76,778,733 - 76,804,204 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	76,778,911 - 76,804,562 (+)	Ensembl				GRCr8
mRatBN7.2	1	67,745,702 - 67,771,132 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	67,758,757 - 67,771,132 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	73,110,065 - 73,122,440 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	81,747,224 - 81,759,599 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	74,939,697 - 74,952,176 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	71,416,042 - 71,447,195 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	71,416,110 - 71,447,195 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	72,808,989 - 72,840,114 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	66,193,153 - 66,205,951 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	65,500,920 - 65,513,163 (+)	NCBI		Celera
RGSC_v3.1	1	66,258,858 - 66,283,419 (+)	NCBI
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Moebius syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

actinomycin D (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

bortezomib (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

crocidolite asbestos (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

FR900359 (ISO)

indometacin (ISO)

ivermectin (ISO)

lead diacetate (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

nitrates (ISO)

Nutlin-3 (ISO)

ozone (ISO)

paracetamol (ISO)

piperonyl butoxide (ISO)

propylparaben (ISO)

rotenone (EXP)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp787
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	76,778,733 - 76,804,204 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	76,778,911 - 76,804,562 (+)	Ensembl				GRCr8
mRatBN7.2	1	67,745,702 - 67,771,132 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	67,758,757 - 67,771,132 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	73,110,065 - 73,122,440 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	81,747,224 - 81,759,599 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	74,939,697 - 74,952,176 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	71,416,042 - 71,447,195 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	71,416,110 - 71,447,195 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	72,808,989 - 72,840,114 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	66,193,153 - 66,205,951 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	65,500,920 - 65,513,163 (+)	NCBI		Celera
RGSC_v3.1	1	66,258,858 - 66,283,419 (+)	NCBI
Cytogenetic Map	1	q12	NCBI

ZNF787
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	56,087,366 - 56,121,295 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	56,087,366 - 56,121,295 (-)	Ensembl			hg38	GRCh38
GRCh37	19	56,598,732 - 56,632,664 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	61,290,544 - 61,324,461 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	53,643,037 - 53,676,872 (-)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	52,909,841 - 52,942,421 (-)	NCBI		HuRef
CHM1_1	19	56,592,308 - 56,626,041 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	59,186,221 - 59,220,132 (-)	NCBI		T2T-CHM13v2.0

Zfp787
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	6,134,488 - 6,162,382 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	6,134,490 - 6,158,996 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	6,131,489 - 6,159,380 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	6,131,491 - 6,155,997 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	6,083,091 - 6,107,573 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	5,734,576 - 5,759,058 (-)	NCBI		MGSCv36	mm8
Celera	7	5,868,470 - 5,892,952 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	3.55	NCBI

Znf787
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955567	511,779 - 537,882 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF787
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	62,371,043 - 62,405,832 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	64,161,150 - 64,196,104 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	53,108,545 - 53,143,475 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	61,919,311 - 61,937,557 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

ZNF787
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	101,773,860 - 101,798,593 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	101,745,773 - 101,797,912 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	101,958,639 - 101,984,969 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	102,418,762 - 102,445,084 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	102,419,996 - 102,445,096 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	102,057,315 - 102,083,644 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	101,775,061 - 101,801,383 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	102,531,723 - 102,558,055 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf787
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	1,540,662 - 1,558,939 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936981	338,684 - 354,109 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936981	338,684 - 354,119 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF787
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	60,422,391 - 60,445,755 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	60,422,389 - 60,446,122 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	55,573,627 - 55,585,259 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF787
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	48,676,314 - 48,712,009 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	48,676,266 - 48,708,934 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	1,387,872 - 1,425,531 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf787
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	1,589,417 - 1,603,262 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	1,589,504 - 1,602,377 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf787
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	179,973,582 - 179,998,887 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp787
60 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	319
Count of miRNA genes:	187
Interacting mature miRNAs:	217
Transcripts:	ENSRNOT00000059069
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	34565726	79565726	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

RH140690

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	67,770,175 - 67,770,355 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	71,446,239 - 71,446,418	NCBI	Rnor6.0
Rnor_5.0	1	72,839,158 - 72,839,337	UniSTS	Rnor5.0
RGSC_v3.4	1	66,204,995 - 66,205,174	UniSTS	RGSC3.4
Celera	1	65,512,207 - 65,512,386	UniSTS
RH 3.4 Map	10	152.3	UniSTS
Cytogenetic Map	1	q12	UniSTS

AI511365

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	67,770,837 - 67,771,037 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	71,446,901 - 71,447,100	NCBI	Rnor6.0
Rnor_5.0	1	72,839,820 - 72,840,019	UniSTS	Rnor5.0
RGSC_v3.4	1	66,205,657 - 66,205,856	UniSTS	RGSC3.4
Celera	1	65,512,869 - 65,513,068	UniSTS
RH 3.4 Map	1	746.59	UniSTS
Cytogenetic Map	1	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059069 ⟹ ENSRNOP00000055847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	76,778,911 - 76,804,562 (+)	Ensembl
mRatBN7.2 Ensembl	1	67,758,757 - 67,771,132 (+)	Ensembl
Rnor_6.0 Ensembl	1	71,434,819 - 71,447,195 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084899 ⟹ ENSRNOP00000075452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	71,416,110 - 71,446,749 (+)	Ensembl

RefSeq Acc Id:

NM_001108904 ⟹ NP_001102374

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	76,791,829 - 76,804,204 (+)	NCBI
mRatBN7.2	1	67,758,757 - 67,771,132 (+)	NCBI
Rnor_6.0	1	71,434,819 - 71,447,195 (+)	NCBI
Rnor_5.0	1	72,808,989 - 72,840,114 (+)	NCBI
RGSC_v3.4	1	66,193,153 - 66,205,951 (+)	RGD
Celera	1	65,500,920 - 65,513,163 (+)	RGD

Sequence:

show sequence

CCAACAGGGACCCAGACATGGAGCTTCGGGAAGAAGCTTGGTCTCCAGGGCCACTGGATTCTGA
GGACCAGCAGATGGCCAGTCATGAGAACCCAGTGGACATCCTCATCATGGATGACGACGACGTC
CCAAGCTGGCCCCCGAACAAGCTTTCCCCACCTCAGTCTGCACCTCCTCCTGGGCCCCCACCCC
GGCCGCGGCCACCTGCACCCTACATCTGCACTGAGTGTGGCAAAAGCTTCAGCCACTGGTCGAA
GCTGACGCGGCACCAACGCACGCACACGGGCGAGCGGCCTAACGCCTGTACCGACTGCGGCAAG
ACCTTCTCGCAGAGCTCGCACCTGGTGCAGCACCGGCGCATCCACACAGGCGAGAAGCCGTACG
CCTGCTCTGAATGCGGCAAGCGCTTTAGCTGGAGCTCAAACCTCATGCAGCACCAGCGCATCCA
CACAGGCGAGAAACCTTATACTTGCCCCGACTGCGGCCGCAGCTTCACACAGAGCAAGAGCCTG
GCCAAGCACCGGCGCTCCCACAGTGGTCTAAAGCCCTTCGTGTGCCCGCGCTGCGGCAGAGGCT
TCAGCCAGCCTAAGAGCCTGGCACGCCACCTACGGTTGCACCCAGAGCTGTCAGGGCCGGGTGT
GGCGGCCAAGGTGCTGGCAGCCAGTGTGCGCCGAGCCAAGGCACCCGAGGAAGCCACAGCAGCG
GACGGCGAAATCGCCATCCCAGTAGGCGACGGCGAGGGCATCATCGTGGTGGGCCCACCAGGGG
ACGGCGCTGCAGCGGCCGCGGCTCTGGCCGGGGTGGGGACGCGGGCAACGGGGACACGGTCGCG
CAGGGCGCCGGCGCCCAAGCCGTACGTGTGCATAGAATGCGGGAAGGGCTTTGGGCACGGGGCT
GGGCTGCTGGCCCACCAGCGCGCTCAGCACGGGGATGGGCTGGGGGCAGTGGGTAGTGAGGAGC
CTGCACACATCTGCGTGGAGTGTGGTGAGGGCTTCGTGCAGGGTGCCGCACTTCGGAGACACAA
GAAGATTCATGCAGTTGGGGCGCCCTCGGTCTGCAGCAGCTGCGGACAGAGTTTCTATCGGGCG
GGCGGAGAGGACGATGGGGAGGACCAGTCTGTTGCTGCGCGGTGTGCGGAATGTCGGGGTGGGG
AGGCCCGGTAGGGACGGGGATGCCCGGGGGGTGGACAGGGCCCCTCGGGCTCGGTGGGGACTAC
CAGCGAGCAAGACCATGAGGGAGGACCAGGGAGAACAAGACCGAAAGGAGCAGCAGCCTTGTCT
CCCTCTGTACCCCGTGCTGTCCTGGGTTTGAGGGGACCCGCAGCTATCAGCTATTGGGTTCTCA
GGACTGCCCACAGCCTCTCTGCTGACCCGCCCTACCGCCTGGCGGACCAGCCCTTTTTAGGTTC
CCATTCTGGGAGCCAGAGACTGAGAGAACTGCGAGAATCAATTGGCACTAGACCCTCAAGAGAA
AGACCACTCCAACTACAGGTGTCGGGCTGAGGTGTAAGGAATGGAGACAATCCTGGCCTTATGC
ATCGAGAGGGTCTTCCTTCTCTTCTAGAATTTTCTTTTAATCATACTGTTTTGATCCCTCACAT
CCATTATTTTTTCTGCCCCTTGGGTCCTTATCAATTTTCTAGCCCAAGACGTTCCTCTCCCTCC
TGTGTTTGCAGTAGCAGAGGAGTGAAGTAGCTTCCTGTTCCCAGCACGGTCTTACTGAGAGGAT
GGGGTCCTGTGTGTTCCCTGTCCTGGCGGTGGAAGAAGGGATGTGGGGGCAATAAATGGCATTA
TTCAATTGTCCCAG

hide sequence

RefSeq Acc Id:

XM_006228193 ⟹ XP_006228255

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	76,778,733 - 76,804,200 (+)	NCBI
mRatBN7.2	1	67,745,702 - 67,771,131 (+)	NCBI
Rnor_6.0	1	71,416,042 - 71,447,194 (+)	NCBI
Rnor_5.0	1	72,808,989 - 72,840,114 (+)	NCBI

Sequence:

show sequence

CCCGACACCCGGAAGTGTGCGCCTAACGGGTCGAGCCCGGCCTTCTGTCCTGGGAGGGGGCGGG
GCCCGAGCCCCTCCGAGCGAGGCGCCATAGAGCAGGACGGAGGACCAGGGTCCTAGATAATTCC
GGAAGTGGCGTCATGAGACGACTCTCGGGACCCAGACATGGAGCTTCGGGAAGAAGCTTGGTCT
CCAGGGCCACTGGATTCTGAGGACCAGCAGATGGCCAGTCATGAGAACCCAGTGGACATCCTCA
TCATGGATGACGACGACGTCCCAAGCTGGCCCCCGAACAAGCTTTCCCCACCTCAGTCTGCACC
TCCTCCTGGGCCCCCACCCCGGCCGCGGCCACCTGCACCCTACATCTGCACTGAGTGTGGCAAA
AGCTTCAGCCACTGGTCGAAGCTGACGCGGCACCAACGCACGCACACGGGCGAGCGGCCTAACG
CCTGTACCGACTGCGGCAAGACCTTCTCGCAGAGCTCGCACCTGGTGCAGCACCGGCGCATCCA
CACAGGCGAGAAGCCGTACGCCTGCTCTGAATGCGGCAAGCGCTTTAGCTGGAGCTCAAACCTC
ATGCAGCACCAGCGCATCCACACAGGCGAGAAACCTTATACTTGCCCCGACTGCGGCCGCAGCT
TCACACAGAGCAAGAGCCTGGCCAAGCACCGGCGCTCCCACAGTGGTCTAAAGCCCTTCGTGTG
CCCGCGCTGCGGCAGAGGCTTCAGCCAGCCTAAGAGCCTGGCACGCCACCTACGGTTGCACCCA
GAGCTGTCAGGGCCGGGTGTGGCGGCCAAGGTGCTGGCAGCCAGTGTGCGCCGAGCCAAGGCAC
CCGAGGAAGCCACAGCAGCGGACGGCGAAATCGCCATCCCAGTAGGCGACGGCGAGGGCATCAT
CGTGGTGGGCCCACCAGGGGACGGCGCTGCAGCGGCCGCGGCTCTGGCCGGGGTGGGGACGCGG
GCAACGGGGACACGGTCGCGCAGGGCGCCGGCGCCCAAGCCGTACGTGTGCATAGAATGCGGGA
AGGGCTTTGGGCACGGGGCTGGGCTGCTGGCCCACCAGCGCGCTCAGCACGGGGATGGGCTGGG
GGCAGTGGGTAGTGAGGAGCCTGCACACATCTGCGTGGAGTGTGGTGAGGGCTTCGTGCAGGGT
GCCGCACTTCGGAGACACAAGAAGATTCATGCAGTTGGGGCGCCCTCGGTCTGCAGCAGCTGCG
GACAGAGTTTCTATCGGGCGGGCGGAGAGGACGATGGGGAGGACCAGTCTGTTGCTGCGCGGTG
TGCGGAATGTCGGGGTGGGGAGGCCCGGTAGGGACGGGGATGCCCGGGGGGTGGACAGGGCCCC
TCGGGCTCGGTGGGGACTACCAGCGAGCAAGACCATGAGGGAGGACCAGGGAGAACAAGACCGA
AAGGAGCAGCAGCCTTGTCTCCCTCTGTACCCCGTGCTGTCCTGGGTTTGAGGGGACCCGCAGC
TATCAGCTATTGGGTTCTCAGGACTGCCCACAGCCTCTCTGCTGACCCGCCCTACCGCCTGGCG
GACCAGCCCTTTTTAGGTTCCCATTCTGGGAGCCAGAGACTGAGAGAACTGCGAGAATCAATTG
GCACTAGACCCTCAAGAGAAAGACCACTCCAACTACAGGTGTCGGGCTGAGGTGTAAGGAATGG
AGACAATCCTGGCCTTATGCATCGAGAGGGTCTTCCTTCTCTTCTAGAATTTTCTTTTAATCAT
ACTGTTTTGATCCCTCACATCCATTATTTTTTCTGCCCCTTGGGTCCTTATCAATTTTCTAGCC
CAAGACGTTCCTCTCCCTCCTGTGTTTGCAGTAGCAGAGGAGTGAAGTAGCTTCCTGTTCCCAG
CACGGTCTTACTGAGAGGATGGGGTCCTGTGTGTTCCCTGTCCTGGCGGTGGAAGAAGGGATGT
GGGGGCAATAAATGGCATTATTCAATTGTCCCA

hide sequence

RefSeq Acc Id:

XM_039084870 ⟹ XP_038940798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	76,778,907 - 76,804,200 (+)	NCBI
mRatBN7.2	1	67,745,869 - 67,771,131 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102374	(Get FASTA)	NCBI Sequence Viewer
	NP_001426203	(Get FASTA)	NCBI Sequence Viewer
	XP_006228255	(Get FASTA)	NCBI Sequence Viewer
	XP_038940798	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83173	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000055847.3

RefSeq Acc Id:

NP_001102374 ⟸ NM_001108904

- UniProtKB:

D3ZDN6 (UniProtKB/TrEMBL), A6KS80 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELREEAWSPGPLDSEDQQMASHENPVDILIMDDDDVPSWPPNKLSPPQSAPPPGPPPRPRPPA
PYICTECGKSFSHWSKLTRHQRTHTGERPNACTDCGKTFSQSSHLVQHRRIHTGEKPYACSECG
KRFSWSSNLMQHQRIHTGEKPYTCPDCGRSFTQSKSLAKHRRSHSGLKPFVCPRCGRGFSQPKS
LARHLRLHPELSGPGVAAKVLAASVRRAKAPEEATAADGEIAIPVGDGEGIIVVGPPGDGAAAA
AALAGVGTRATGTRSRRAPAPKPYVCIECGKGFGHGAGLLAHQRAQHGDGLGAVGSEEPAHICV
ECGEGFVQGAALRRHKKIHAVGAPSVCSSCGQSFYRAGGEDDGEDQSVAARCAECRGGEAR

hide sequence

RefSeq Acc Id:

XP_006228255 ⟸ XM_006228193

- Peptide Label:

isoform X1

- Sequence:

show sequence

MELREEAWSPGPLDSEDQQMASHENPVDILIMDDDDVPSWPPNKLSPPQSAPPPGPPPRPRPPA
PYICTECGKSFSHWSKLTRHQRTHTGERPNACTDCGKTFSQSSHLVQHRRIHTGEKPYACSECG
KRFSWSSNLMQHQRIHTGEKPYTCPDCGRSFTQSKSLAKHRRSHSGLKPFVCPRCGRGFSQPKS
LARHLRLHPELSGPGVAAKVLAASVRRAKAPEEATAADGEIAIPVGDGEGIIVVGPPGDGAAAA
AALAGVGTRATGTRSRRAPAPKPYVCIECGKGFGHGAGLLAHQRAQHGDGLGAVGSEEPAHICV
ECGEGFVQGAALRRHKKIHAVGAPSVCSSCGQSFYRAGGEDDGEDQSVAARCAECRGGEAR

hide sequence

Ensembl Acc Id:

ENSRNOP00000075452 ⟸ ENSRNOT00000084899

Ensembl Acc Id:

ENSRNOP00000055847 ⟸ ENSRNOT00000059069

RefSeq Acc Id:	XP_038940798 ⟸ XM_039084870
- Peptide Label:	isoform X1

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDN6-F1-model_v2	AlphaFold	D3ZDN6	1-381	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310536	AgrOrtholog
BioCyc Gene	G2FUF-60918	BioCyc
Ensembl Genes	ENSRNOG00000015456	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059069.4	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Snail/Krueppel_Znf	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:365176	UniProtKB/TrEMBL
NCBI Gene	365176	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 281-RELATED	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_6	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PhenoGen	Zfp787	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015456	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A6KS80	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDN6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-19	Zfp787	zinc finger protein 787	Znf787	zinc finger protein 787	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Znf787	zinc finger protein 787	Zfp787	zinc finger protein 787	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-27	Zfp787	zinc finger protein 787	RGD1310536_predicted	similar to TTF-I interacting peptide 20; TIP20; Transcription Termination Factor I Interacting Peptide 20 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310536_predicted	similar to TTF-I interacting peptide 20; TIP20; Transcription Termination Factor I Interacting Peptide 20 (predicted)	LOC365176_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC365176_predicted	similar to TTF-I interacting peptide 20; TIP20; Transcription Termination Factor I Interacting Peptide 20 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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