Armc8 (armadillo repeat containing 8) - Rat Genome Database

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Pathways
Gene: Armc8 (armadillo repeat containing 8) Rattus norvegicus
Analyze
Symbol: Armc8
Name: armadillo repeat containing 8
RGD ID: 1310477
Description: Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of GID complex. Orthologous to human ARMC8 (armadillo repeat containing 8); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: armadillo repeat-containing protein 8; LOC315949; RGD1310477; similar to RIKEN cDNA 1200015K23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,916,274 - 109,010,877 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8108,916,274 - 109,010,717 (-)EnsemblGRCr8
mRatBN7.28100,036,946 - 100,131,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,036,946 - 100,131,520 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8105,703,848 - 105,798,185 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08103,903,143 - 103,997,479 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,745,673 - 101,840,013 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,723,359 - 107,819,208 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,723,359 - 107,819,050 (-)Ensemblrn6Rnor6.0
Rnor_5.08107,148,284 - 107,244,117 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48104,341,558 - 104,436,086 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera899,438,273 - 99,531,720 (-)NCBICelera
RGSC_v3.18104,362,713 - 104,455,541 (-)NCBI
Cytogenetic Map8q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
GID complex  (IBA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)
ubiquitin ligase complex  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17467196   PMID:29911972   PMID:31904090  


Genomics

Comparative Map Data
Armc8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,916,274 - 109,010,877 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8108,916,274 - 109,010,717 (-)EnsemblGRCr8
mRatBN7.28100,036,946 - 100,131,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,036,946 - 100,131,520 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8105,703,848 - 105,798,185 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08103,903,143 - 103,997,479 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,745,673 - 101,840,013 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,723,359 - 107,819,208 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,723,359 - 107,819,050 (-)Ensemblrn6Rnor6.0
Rnor_5.08107,148,284 - 107,244,117 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48104,341,558 - 104,436,086 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera899,438,273 - 99,531,720 (-)NCBICelera
RGSC_v3.18104,362,713 - 104,455,541 (-)NCBI
Cytogenetic Map8q31NCBI
ARMC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,187,248 - 138,298,389 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,187,248 - 138,298,384 (+)Ensemblhg38GRCh38
GRCh373137,906,090 - 138,017,231 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,388,838 - 139,498,909 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3136,330,912 - 136,441,107 (+)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,281,180 - 135,392,287 (+)NCBIHuRef
CHM1_13137,869,909 - 137,981,013 (+)NCBICHM1_1
T2T-CHM13v2.03140,927,839 - 141,038,955 (+)NCBIT2T-CHM13v2.0
Armc8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,360,438 - 99,451,471 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,360,425 - 99,450,952 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38999,478,385 - 99,568,907 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,478,372 - 99,568,899 (-)Ensemblmm10GRCm38
MGSCv37999,378,810 - 99,469,318 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36999,289,447 - 99,378,251 (-)NCBIMGSCv36mm8
Celera999,013,248 - 99,103,820 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.74NCBI
Armc8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955501705,967 - 800,880 (-)Ensembl
ChiLan1.0NW_004955501705,967 - 800,884 (-)NCBIChiLan1.0ChiLan1.0
ARMC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,092,054 - 136,204,879 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13136,096,797 - 136,209,608 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03135,214,895 - 135,328,235 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,665,113 - 142,777,397 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,665,419 - 142,774,903 (+)EnsemblpanPan2panpan1.1
ARMC8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,401,684 - 34,511,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,401,720 - 34,510,422 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2334,394,214 - 34,505,315 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02334,941,627 - 35,052,849 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2334,941,849 - 35,050,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,623,466 - 34,734,619 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,688,808 - 34,799,938 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02334,939,916 - 35,051,114 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Armc8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560273,788,178 - 73,886,845 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936540527,965 - 626,607 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936540527,977 - 626,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1378,982,710 - 79,085,680 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11378,982,684 - 79,085,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,651,278 - 86,696,017 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARMC8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11552,244,803 - 52,354,877 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1552,243,835 - 52,355,232 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604125,258,177 - 25,368,755 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Armc8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,710,919 - 14,799,806 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473014,710,878 - 14,801,654 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Armc8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1890,820,288 - 90,913,982 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Armc8
458 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:546
Count of miRNA genes:273
Interacting mature miRNAs:339
Transcripts:ENSRNOT00000019536
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH132845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28100,078,162 - 100,078,360 (+)MAPPERmRatBN7.2
Rnor_6.08107,765,042 - 107,765,239NCBIRnor6.0
Rnor_5.08107,189,967 - 107,190,164UniSTSRnor5.0
RGSC_v3.48104,382,775 - 104,382,972UniSTSRGSC3.4
Celera899,478,506 - 99,478,703UniSTS
RH 3.4 Map81051.2UniSTS
Cytogenetic Map8q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001173354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000019536   ⟹   ENSRNOP00000019536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,916,274 - 109,010,717 (-)Ensembl
mRatBN7.2 Ensembl8100,036,946 - 100,131,390 (-)Ensembl
Rnor_6.0 Ensembl8107,723,359 - 107,819,050 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102972   ⟹   ENSRNOP00000093072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,916,274 - 109,010,717 (-)Ensembl
mRatBN7.2 Ensembl8100,036,946 - 100,131,390 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107798   ⟹   ENSRNOP00000093466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,922,417 - 108,991,079 (-)Ensembl
mRatBN7.2 Ensembl8100,042,554 - 100,111,752 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109437   ⟹   ENSRNOP00000090699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,079,073 - 100,131,520 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115822   ⟹   ENSRNOP00000089635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,916,274 - 109,010,717 (-)Ensembl
mRatBN7.2 Ensembl8100,036,946 - 100,131,390 (-)Ensembl
RefSeq Acc Id: NM_001173354   ⟹   NP_001166825
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,274 - 109,010,717 (-)NCBI
mRatBN7.28100,036,946 - 100,131,390 (-)NCBI
Rnor_6.08107,723,359 - 107,819,050 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Celera899,438,273 - 99,531,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243622   ⟹   XP_006243684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,468 (-)NCBI
Rnor_6.08107,723,359 - 107,807,856 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243623   ⟹   XP_006243685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,467 (-)NCBI
Rnor_6.08107,723,359 - 107,807,855 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243624   ⟹   XP_006243686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,473 (-)NCBI
Rnor_6.08107,723,359 - 107,807,858 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243625   ⟹   XP_006243687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,866 (-)NCBI
mRatBN7.28100,036,946 - 100,131,544 (-)NCBI
Rnor_6.08107,723,359 - 107,819,208 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081544   ⟹   XP_038937472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,469 (-)NCBI
RefSeq Acc Id: XM_039081545   ⟹   XP_038937473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,467 (-)NCBI
RefSeq Acc Id: XM_039081546   ⟹   XP_038937474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,473 (-)NCBI
RefSeq Acc Id: XM_039081547   ⟹   XP_038937475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,472 (-)NCBI
RefSeq Acc Id: XM_063265588   ⟹   XP_063121658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,877 (-)NCBI
RefSeq Acc Id: XM_063265589   ⟹   XP_063121659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,877 (-)NCBI
RefSeq Acc Id: XM_063265590   ⟹   XP_063121660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,868 (-)NCBI
RefSeq Acc Id: XM_063265591   ⟹   XP_063121661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,877 (-)NCBI
RefSeq Acc Id: XM_063265592   ⟹   XP_063121662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,868 (-)NCBI
RefSeq Acc Id: NP_001166825   ⟸   NM_001173354
- UniProtKB: F1M943 (UniProtKB/TrEMBL),   B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243687   ⟸   XM_006243625
- Peptide Label: isoform X1
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243686   ⟸   XM_006243624
- Peptide Label: isoform X4
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243685   ⟸   XM_006243623
- Peptide Label: isoform X3
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243684   ⟸   XM_006243622
- Peptide Label: isoform X1
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019536   ⟸   ENSRNOT00000019536
RefSeq Acc Id: XP_038937474   ⟸   XM_039081546
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937475   ⟸   XM_039081547
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038937472   ⟸   XM_039081544
- Peptide Label: isoform X2
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937473   ⟸   XM_039081545
- Peptide Label: isoform X5
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090699   ⟸   ENSRNOT00000109437
Ensembl Acc Id: ENSRNOP00000093466   ⟸   ENSRNOT00000107798
Ensembl Acc Id: ENSRNOP00000093072   ⟸   ENSRNOT00000102972
Ensembl Acc Id: ENSRNOP00000089635   ⟸   ENSRNOT00000115822
RefSeq Acc Id: XP_063121661   ⟸   XM_063265591
- Peptide Label: isoform X11
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121659   ⟸   XM_063265589
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AI93 (UniProtKB/TrEMBL),   B4F7A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121658   ⟸   XM_063265588
- Peptide Label: isoform X7
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121662   ⟸   XM_063265592
- Peptide Label: isoform X12
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121660   ⟸   XM_063265590
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GI95 (UniProtKB/TrEMBL),   B4F7A2 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M943-F1-model_v2 AlphaFold F1M943 1-673 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696211
Promoter ID:EPDNEW_R6736
Type:multiple initiation site
Name:Armc8_1
Description:armadillo repeat containing 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08107,818,981 - 107,819,041EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310477 AgrOrtholog
BioCyc Gene G2FUF-29394 BioCyc
Ensembl Genes ENSRNOG00000014521 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019536 ENTREZGENE
  ENSRNOT00000019536.7 UniProtKB/TrEMBL
  ENSRNOT00000102972 ENTREZGENE
  ENSRNOT00000102972.2 UniProtKB/TrEMBL
  ENSRNOT00000107798.2 UniProtKB/TrEMBL
  ENSRNOT00000115822 ENTREZGENE
  ENSRNOT00000115822.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  ARMC8/Vid28 UniProtKB/TrEMBL
KEGG Report rno:315949 UniProtKB/TrEMBL
NCBI Gene 315949 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
  PTHR15651 UniProtKB/TrEMBL
PhenoGen Armc8 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014521 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AI93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIU1_RAT UniProtKB/TrEMBL
  A0A8I6GI95 ENTREZGENE, UniProtKB/TrEMBL
  B4F7A2 ENTREZGENE, UniProtKB/TrEMBL
  F1M943 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Armc8  armadillo repeat containing 8   Armc8_predicted  armadillo repeat containing 8 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Armc8_predicted  armadillo repeat containing 8 (predicted)  RGD1310477_predicted  similar to RIKEN cDNA 1200015K23 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310477_predicted  similar to RIKEN cDNA 1200015K23 (predicted)  LOC315949_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315949_predicted  similar to RIKEN cDNA 1200015K23 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL