Nipsnap1 (nipsnap homolog 1) - Rat Genome Database

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Gene: Nipsnap1 (nipsnap homolog 1) Rattus norvegicus
Analyze
Symbol: Nipsnap1
Name: nipsnap homolog 1
RGD ID: 1310419
Description: Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in mitophagy and sensory perception of pain. Predicted to be located in membrane. Predicted to be active in mitochondrial matrix and synaptic membrane. Orthologous to human NIPSNAP1 (nipsnap homolog 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1; 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans); LOC360971; nipsnap homolog 1 (C. elegans)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,957,714 - 83,981,579 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1483,957,702 - 83,981,576 (+)EnsemblGRCr8
mRatBN7.21479,734,234 - 79,758,101 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,734,209 - 79,758,098 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,164,856 - 84,188,722 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,404,932 - 85,428,798 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,854,604 - 81,878,465 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,113,578 - 85,137,457 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,113,578 - 85,137,454 (+)Ensemblrn6Rnor6.0
Rnor_5.01485,791,355 - 85,815,292 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41485,532,437 - 85,556,559 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1478,638,919 - 78,662,697 (+)NCBICelera
RGSC_v3.11485,551,597 - 85,575,704 (+)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bortezomib  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
dibenzofurans  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
Evodiamine  (ISO)
fipronil  (EXP)
flutamide  (EXP)
GSK-J4  (ISO)
ivermectin  (ISO)
mercury dichloride  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
okadaic acid  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
tetrachloromethane  (EXP,ISO)
tetrahydropalmatine  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
tolcapone  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autophagy  (IEA)
mitophagy  (IEA,ISO)
sensory perception of pain  (IBA,IEA,ISO)

Cellular Component
membrane  (IEA,ISO)
mitochondrial matrix  (IEA,ISO)
mitochondrion  (IBA,IEA,ISO)
synaptic membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12865426   PMID:14651853   PMID:17728463   PMID:18614015   PMID:20497468   PMID:20646061   PMID:22311985   PMID:25931508  


Genomics

Comparative Map Data
Nipsnap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,957,714 - 83,981,579 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1483,957,702 - 83,981,576 (+)EnsemblGRCr8
mRatBN7.21479,734,234 - 79,758,101 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,734,209 - 79,758,098 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,164,856 - 84,188,722 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,404,932 - 85,428,798 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,854,604 - 81,878,465 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,113,578 - 85,137,457 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,113,578 - 85,137,454 (+)Ensemblrn6Rnor6.0
Rnor_5.01485,791,355 - 85,815,292 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41485,532,437 - 85,556,559 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1478,638,919 - 78,662,697 (+)NCBICelera
RGSC_v3.11485,551,597 - 85,575,704 (+)NCBI
Cytogenetic Map14q21NCBI
NIPSNAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,554,808 - 29,581,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,554,808 - 29,581,327 (-)Ensemblhg38GRCh38
GRCh372229,950,797 - 29,977,102 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,280,800 - 28,307,328 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342228,275,353 - 28,301,880NCBI
Celera2213,750,532 - 13,776,881 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2212,914,568 - 12,940,820 (-)NCBIHuRef
CHM1_12229,910,086 - 29,936,601 (-)NCBICHM1_1
T2T-CHM13v2.02230,018,168 - 30,044,476 (-)NCBIT2T-CHM13v2.0
Nipsnap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,823,951 - 4,844,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,823,951 - 4,844,200 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38114,873,951 - 4,894,201 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,873,951 - 4,894,200 (+)Ensemblmm10GRCm38
MGSCv37114,774,006 - 4,794,203 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36114,774,006 - 4,794,203 (+)NCBIMGSCv36mm8
Celera115,371,057 - 5,391,043 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.07NCBI
Nipsnap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,795,413 - 3,815,289 (-)Ensembl
ChiLan1.0NW_0049554553,796,445 - 3,815,290 (-)NCBIChiLan1.0ChiLan1.0
NIPSNAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,528,536 - 39,554,461 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,229,765 - 42,255,697 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,600,285 - 10,626,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,405,507 - 28,419,201 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,406,638 - 28,432,897 (-)EnsemblpanPan2panpan1.1
NIPSNAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,785,902 - 22,800,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,786,987 - 22,800,206 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2622,657,592 - 22,671,514 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02623,159,706 - 23,173,623 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2623,122,940 - 23,173,578 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,869,510 - 22,883,628 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,132,509 - 23,146,425 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,192,431 - 23,206,550 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nipsnap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,353,021 - 112,365,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,504,913 - 3,517,708 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,504,940 - 3,517,654 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPSNAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,624,727 - 46,641,438 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11446,624,368 - 46,641,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,658,228 - 49,675,655 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIPSNAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,429,036 - 12,454,532 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,428,739 - 12,454,297 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045113,685,568 - 113,710,669 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nipsnap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247475,874,226 - 5,894,031 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247475,875,123 - 5,893,668 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nipsnap1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11173,848,626 - 73,871,618 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nipsnap1
158 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:90
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000011158
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat

Markers in Region
D14Got70  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21479,739,723 - 79,739,880 (+)MAPPERmRatBN7.2
Rnor_6.01485,119,068 - 85,119,224NCBIRnor6.0
Rnor_5.01485,796,845 - 85,797,001UniSTSRnor5.0
RGSC_v3.41485,537,927 - 85,538,083UniSTSRGSC3.4
RGSC_v3.41485,537,926 - 85,538,083RGDRGSC3.4
Celera1478,644,409 - 78,644,565UniSTS
RGSC_v3.11485,557,072 - 85,557,228RGD
RH 3.4 Map14555.2UniSTS
RH 3.4 Map14555.2RGD
RH 2.0 Map14701.4RGD
Cytogenetic Map14q21UniSTS
D14Got69  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21479,736,198 - 79,736,350 (+)MAPPERmRatBN7.2
Rnor_6.01485,115,542 - 85,115,693NCBIRnor6.0
Rnor_5.01485,793,319 - 85,793,470UniSTSRnor5.0
RGSC_v3.41485,534,349 - 85,534,607RGDRGSC3.4
RGSC_v3.41485,534,402 - 85,534,553UniSTSRGSC3.4
Celera1478,640,884 - 78,641,035UniSTS
RGSC_v3.11485,553,547 - 85,553,698RGD
RH 3.4 Map14554.2RGD
RH 3.4 Map14554.2UniSTS
Cytogenetic Map14q21UniSTS
BE119843  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41485,541,762 - 85,541,924UniSTSRGSC3.4
Celera1478,648,244 - 78,648,406UniSTS
RH 3.4 Map14553.5UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011158   ⟹   ENSRNOP00000011158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1483,957,702 - 83,981,576 (+)Ensembl
mRatBN7.2 Ensembl1479,734,209 - 79,758,095 (+)Ensembl
Rnor_6.0 Ensembl1485,113,578 - 85,137,454 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098065   ⟹   ENSRNOP00000091044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1483,957,702 - 83,981,576 (+)Ensembl
mRatBN7.2 Ensembl1479,734,209 - 79,758,095 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103839   ⟹   ENSRNOP00000083882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1483,971,093 - 83,981,576 (+)Ensembl
mRatBN7.2 Ensembl1479,746,776 - 79,758,098 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108106   ⟹   ENSRNOP00000089911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1483,970,809 - 83,981,576 (+)Ensembl
mRatBN7.2 Ensembl1479,745,919 - 79,758,098 (+)Ensembl
RefSeq Acc Id: NM_001100730   ⟹   NP_001094200
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,957,714 - 83,981,579 (+)NCBI
mRatBN7.21479,734,234 - 79,758,101 (+)NCBI
Rnor_6.01485,113,578 - 85,137,457 (+)NCBI
Rnor_5.01485,791,355 - 85,815,292 (+)NCBI
RGSC_v3.41485,532,437 - 85,556,559 (+)RGD
Celera1478,638,919 - 78,662,697 (+)RGD
Sequence:
RefSeq Acc Id: XM_006251337   ⟹   XP_006251399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,965,776 - 83,981,579 (+)NCBI
mRatBN7.21479,746,696 - 79,758,101 (+)NCBI
Rnor_6.01485,126,104 - 85,137,457 (+)NCBI
Rnor_5.01485,791,355 - 85,815,292 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001094200   ⟸   NM_001100730
- UniProtKB: G3V728 (UniProtKB/TrEMBL),   Q5EBA4 (UniProtKB/TrEMBL),   A6IKI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251399   ⟸   XM_006251337
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZW49 (UniProtKB/TrEMBL),   A6IKI6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011158   ⟸   ENSRNOT00000011158
Ensembl Acc Id: ENSRNOP00000091044   ⟸   ENSRNOT00000098065
Ensembl Acc Id: ENSRNOP00000089911   ⟸   ENSRNOT00000108106
Ensembl Acc Id: ENSRNOP00000083882   ⟸   ENSRNOT00000103839
Protein Domains
NIPSNAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V728-F1-model_v2 AlphaFold G3V728 1-284 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699449
Promoter ID:EPDNEW_R9973
Type:multiple initiation site
Name:Nipsnap1_1
Description:nipsnap homolog 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01485,113,576 - 85,113,636EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310419 AgrOrtholog
BioCyc Gene G2FUF-15167 BioCyc
Ensembl Genes ENSRNOG00000008374 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011158 ENTREZGENE
  ENSRNOT00000011158.7 UniProtKB/TrEMBL
  ENSRNOT00000098065.2 UniProtKB/TrEMBL
  ENSRNOT00000103839 ENTREZGENE
  ENSRNOT00000103839.2 UniProtKB/TrEMBL
  ENSRNOT00000108106.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.100 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7326277 IMAGE-MGC_LOAD
InterPro Dimeric_a/b-barrel UniProtKB/TrEMBL
  NIPSNAP UniProtKB/TrEMBL
  NipSnap_domain UniProtKB/TrEMBL
KEGG Report rno:360971 UniProtKB/TrEMBL
MGC_CLONE MGC:109017 IMAGE-MGC_LOAD
NCBI Gene 360971 ENTREZGENE
PANTHER NIPSNAP-RELATED UniProtKB/TrEMBL
  PROTEIN NIPSNAP HOMOLOG 1 UniProtKB/TrEMBL
Pfam NIPSNAP UniProtKB/TrEMBL
PhenoGen Nipsnap1 PhenoGen
RatGTEx ENSRNOG00000008374 RatGTEx
Superfamily-SCOP Dimer_A_B_barrel UniProtKB/TrEMBL
UniProt A0A8I5ZW49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAU8_RAT UniProtKB/TrEMBL
  A0A8I6ALY8_RAT UniProtKB/TrEMBL
  A6IKI3 ENTREZGENE, UniProtKB/TrEMBL
  A6IKI4_RAT UniProtKB/TrEMBL
  A6IKI5_RAT UniProtKB/TrEMBL
  A6IKI6 ENTREZGENE, UniProtKB/TrEMBL
  A6IKI8_RAT UniProtKB/TrEMBL
  A6IKI9_RAT UniProtKB/TrEMBL
  G3V728 ENTREZGENE, UniProtKB/TrEMBL
  Q5EBA4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-17 Nipsnap1  nipsnap homolog 1  Nipsnap1  nipsnap homolog 1 (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-01-13 Nipsnap1  nipsnap homolog 1 (C. elegans)  Nipsnap1  4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Nipsnap1  4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)  Nipsnap1_predicted  4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Nipsnap1_predicted  4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) (predicted)      Symbol and Name status set to approved 70820 APPROVED