Nipsnap1 (nipsnap homolog 1) - Rat Genome Database

Name: Nipsnap1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Nipsnap1 (nipsnap homolog 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Nipsnap1

Name:

nipsnap homolog 1

RGD ID:

12570121

Description:

ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN mitophagy (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); vestibular schwannomatosis (ortholog); FOUND IN mitochondrial matrix (ortholog); synaptic membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NIPSNAP1 (nipsnap homolog 1)	NCBI	Ortholog
Mus musculus (house mouse):	Nipsnap1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nipsnap1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nipsnap1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NIPSNAP1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NIPSNAP1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NIPSNAP1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NIPSNAP1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nipsnap1 (nipsnap homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	112,353,021 - 112,365,770 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936657	3,504,913 - 3,517,708 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936657	3,504,940 - 3,517,654 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

vestibular schwannomatosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitophagy (ISO)

sensory perception of pain (IEA)

Cellular Component

membrane (IEA)

mitochondrial matrix (ISO)

mitochondrion (IEA)

synaptic membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

protein-macromolecule adaptor activity (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Nipsnap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	112,353,021 - 112,365,770 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936657	3,504,913 - 3,517,708 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936657	3,504,940 - 3,517,654 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NIPSNAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	29,554,808 - 29,581,113 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	29,554,808 - 29,581,327 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	29,950,797 - 29,977,102 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	28,280,800 - 28,307,328 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	28,275,353 - 28,301,880	NCBI
Celera	22	13,750,532 - 13,776,881 (-)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	12,914,568 - 12,940,820 (-)	NCBI		HuRef
CHM1_1	22	29,910,086 - 29,936,601 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	30,018,168 - 30,044,476 (-)	NCBI		T2T-CHM13v2.0

Nipsnap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	4,823,951 - 4,844,201 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	4,823,951 - 4,844,200 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	4,873,951 - 4,894,201 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	4,873,951 - 4,894,200 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	4,774,006 - 4,794,203 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	4,774,006 - 4,794,203 (+)	NCBI		MGSCv36	mm8
Celera	11	5,371,057 - 5,391,043 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	3.07	NCBI

Nipsnap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	83,957,714 - 83,981,579 (+)	NCBI		GRCr8
mRatBN7.2	14	79,734,234 - 79,758,101 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	79,734,209 - 79,758,098 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	84,164,856 - 84,188,722 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	85,404,932 - 85,428,798 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	81,854,604 - 81,878,465 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	85,113,578 - 85,137,457 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	85,113,578 - 85,137,454 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	85,791,355 - 85,815,292 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	85,532,437 - 85,556,559 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	85,551,597 - 85,575,704 (+)	NCBI
Celera	14	78,638,919 - 78,662,697 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Nipsnap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	3,795,413 - 3,815,289 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	3,796,445 - 3,815,290 (-)	NCBI	ChiLan1.0	ChiLan1.0

NIPSNAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	39,528,536 - 39,554,461 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	42,229,765 - 42,255,697 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	10,600,285 - 10,626,474 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	28,405,507 - 28,419,201 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	28,406,638 - 28,432,897 (-)	Ensembl	panpan1.1		panPan2

NIPSNAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	22,785,902 - 22,800,241 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	22,786,987 - 22,800,206 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	22,657,592 - 22,671,514 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	23,159,706 - 23,173,623 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	23,122,940 - 23,173,578 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	22,869,510 - 22,883,628 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	23,132,509 - 23,146,425 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	23,192,431 - 23,206,550 (-)	NCBI		UU_Cfam_GSD_1.0

NIPSNAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	46,624,727 - 46,641,438 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	46,624,368 - 46,641,453 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	49,658,228 - 49,675,655 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NIPSNAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	12,429,036 - 12,454,532 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	12,428,739 - 12,454,297 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	113,685,568 - 113,710,669 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nipsnap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	5,874,226 - 5,894,031 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	5,875,123 - 5,893,668 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005336054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000001564 ⟹ ENSSTOP00000001401

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936657	3,504,913 - 3,517,708 (-)	Ensembl

RefSeq Acc Id:

XM_005336054 ⟹ XP_005336111

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	112,353,022 - 112,365,770 (+)	NCBI
SpeTri2.0	NW_004936657	3,504,940 - 3,517,654 (-)	NCBI

Sequence:

show sequence

GCCTTCCTCCAACCTGCGCCGCTACAACATGGCTCCGCGTCTGTGCAGCATCTCTGCAGCGGCG
CGGCGGGTGCTGGGGAACCCGGGACCCCGCGCAGGGGACGTCGCGGCTGCGGCTGCGACGCGTT
TCTATTCCAAGGACAATGAAGGCAGCTGGTTTCGGTCCCTCTTTGTCCACAAGGTGGATCCTCG
GAAGGATGCCCACTCCACCCTGCTGTCCAAGAAGGAGACCAGCAACCTCTATAAGATCCAATTT
CACAATGTGAAGCCTGAGTGTCTGGATGCCTACAACAGCCTGACGGAGGCTGTGCTGCCTAAGC
TGCACCTGGATGAGGACTATCCCTGCTCACTTGTGGGCAACTGGAACACATGGTATGGGGAGCA
GGACCAGGCAGTGCACCTGTGGAGATTCTCAGGTGGATACCCAGCCCTCATGGACTGCATGAAC
AAGCTGAAAAACAACAAGGAGTACCTGGAGTTCCGAAAGGAGCGGAGCTATATGCTGCTGTCTA
GGAGAAACCAGTTGCTCCTGGAGTTTAGCTTCTGGAATGAGCCACAGCCTAGAGCGGGCCCCAA
CATCTATGAACTGAGAACATACAAGCTCAAGCCAGGAACCATGATTGAGTGGGGGAACAACTGG
GCTCGGGCCATCAAGTACCGACAGGAGAACCAGGAGGCAGTGGGCGGCTTCTTCTCACAGATAG
GAGAGCTCTACGTTGTGCACCACCTCTGGGCTTATAAAGACCTGCAGTCTCGGGAGGAGACTCG
AAATGCTGCCTGGAGGAAGAGGGGCTGGGATGAAAATGTCTACTATACAGTCCCCTTGGTGCGA
CACATGGAGTCTCGGATCATGATCCCCTTGAAGATTTCGCCTCTACAATGATGCTGCTGATGGC
TCTAGCTCCTTCCCCTTCTCCCTCAAGGCAGCCAGGACAGAGGAGTTCCCAGTCCTGATTTCTC
TTGGCTCTGGGAAGACTCTGAAGGGTGGTGCACAGCTCAGGCAAAGATGACAAGGCTCTGAGGA
ATTAAGCTCTGTCCAGATCCATCCTTCCCTAAGCCTTTCCACTCACCTCTTTCCCCTCTGCTGG
TAGTTTCTAATTTCCCTAAATGAAGAATAGCAACCTTTTAGGACTTCTTACATTTCTCTCAGAG
ATTCCTCATAATCAAGGCCACCAGTCCCAGGTATCAGCATGGAAACCCTTGGGTTAGCATAGTT
GCACAGAAGGTAGTGTGGAGGGAGGAGGTCAGACCAGGCCAGGCCTTGAGGAATTCCCTGATCT
CCACTGTGCCATCCTTACTGCATAAGCAAAGATTGAGTCAAGTCCCACTTGTTGGGGGAAAGCC
TGGTATTGCCATAAACCCTCAAATCTTAAAGGTTAGAATGAAATCCAGAATCTATCCGGAGAGG
CTGGGAAAAGGGATTGGAGCAGGATTGATTTGGGAGCAAGAGACAGACATAAAACAGAAACTAG
AACTTAGAACTCAAGAGAACTTGCACAATTTGTAAAACAGAACTGGGAAGATAGAATAGAGGTG
ACCAATTGGCAAGAAGGTCCATAATACTAGATAGAGAAGCTTATCTGGGATTGAGAACTTAAAT
ATGTAGTTCCAGCCCTTCTCCTGCCCTCCCTCCTTCCTGCAGGCAAAACTACAGGACAGGGCCT
GTATTTCCCTCATCCAGCATTCCTTTTCCCTTACTTGACATTCATTTTACAGGGCCTGAAGCCT
GTGGAGTAGGGTCAGTGACTCTGGGGACTTCCTCAGTGACCCCCATACCTCATGAACCCTTGGG
TAGCTTGAATCTGCCTCCTTACCAGGAAAATGCGCTGGAGTTGCTGATGGAATCAATTAAATAT
TTACTATAAA

hide sequence

RefSeq Acc Id:

XM_040291983 ⟹ XP_040147917

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	112,353,021 - 112,365,770 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005336111	(Get FASTA)	NCBI Sequence Viewer
	XP_040147917	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001401.2
GenBank Protein	KAG3278329	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005336111 ⟸ XM_005336054
- Peptide Label:	isoform X1
- UniProtKB:	I3LYT7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPRLCSISAAARRVLGNPGPRAGDVAAAAATRFYSKDNEGSWFRSLFVHKVDPRKDAHSTLLS KKETSNLYKIQFHNVKPECLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAVHLWRF SGGYPALMDCMNKLKNNKEYLEFRKERSYMLLSRRNQLLLEFSFWNEPQPRAGPNIYELRTYKL KPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGW DENVYYTVPLVRHMESRIMIPLKISPLQ hide sequence

RefSeq Acc Id:	XP_040147917 ⟸ XM_040291983
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSSTOP00000001401 ⟸ ENSSTOT00000001564

Protein Domains

NIPSNAP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001563	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001564.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.100	UniProtKB/TrEMBL
InterPro	Dimeric_a/b-barrel	UniProtKB/TrEMBL
	NIPSNAP	UniProtKB/TrEMBL
NCBI Gene	Nipsnap1	ENTREZGENE
PANTHER	NIPSNAP-RELATED	UniProtKB/TrEMBL
	PROTEIN NIPSNAP HOMOLOG 1	UniProtKB/TrEMBL
Pfam	NIPSNAP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54909	UniProtKB/TrEMBL
UniProt	I3LYT7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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