Sap18 (Sin3A associated protein 18) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sap18 (Sin3A associated protein 18) Rattus norvegicus
Analyze
Symbol: Sap18
Name: Sin3A associated protein 18
RGD ID: 1310388
Description: Predicted to enable transcription corepressor activity. Predicted to be involved in positive regulation of apoptotic process and regulation of RNA metabolic process. Predicted to be located in cytosol and nuclear speck. Predicted to be part of ASAP complex and exon-exon junction complex. Predicted to be active in nucleus. Orthologous to human SAP18 (Sin3A associated protein 18); PARTICIPATES IN Hedgehog signaling pathway; mRNA decay pathway; RNA transport pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: histone deacetylase complex subunit SAP18; LOC290284; MGC125107; Sin3-associated polypeptide 18; sin3-associated polypeptide, 18kDa; Sin3A-associated protein, 18kDa
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Sap18-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81536,058,784 - 36,063,089 (+)NCBIGRCr8
mRatBN7.21531,943,228 - 31,947,534 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,943,230 - 31,950,038 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1086,657,353 - 86,657,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,934,558 - 33,938,863 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01535,085,228 - 35,089,533 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01533,343,312 - 33,347,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01538,069,320 - 38,073,625 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1538,069,320 - 38,073,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,910,111 - 41,914,416 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,839,247 - 36,843,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,854,946 - 36,859,259 (+)NCBI
Celera1531,653,889 - 31,658,194 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
acrylamide  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clobetasol  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
disulfiram  (ISO)
diuron  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methamphetamine  (EXP)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
miconazole  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
quercitrin  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
topotecan  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:12665594   PMID:16314458   PMID:20966198   PMID:22203037   PMID:22681889  


Genomics

Comparative Map Data
Sap18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81536,058,784 - 36,063,089 (+)NCBIGRCr8
mRatBN7.21531,943,228 - 31,947,534 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,943,230 - 31,950,038 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1086,657,353 - 86,657,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,934,558 - 33,938,863 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01535,085,228 - 35,089,533 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01533,343,312 - 33,347,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01538,069,320 - 38,073,625 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1538,069,320 - 38,073,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,910,111 - 41,914,416 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,839,247 - 36,843,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,854,946 - 36,859,259 (+)NCBI
Celera1531,653,889 - 31,658,194 (+)NCBICelera
Cytogenetic Map15p12NCBI
SAP18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381321,140,119 - 21,149,097 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1321,140,119 - 21,149,097 (+)EnsemblGRCh38hg38GRCh38
GRCh371321,714,258 - 21,723,236 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361320,612,685 - 20,620,977 (+)NCBINCBI36Build 36hg18NCBI36
Build 341320,612,684 - 20,620,974NCBI
Celera132,776,645 - 2,785,216 (+)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef132,516,765 - 2,524,676 (+)NCBIHuRef
CHM1_11321,682,666 - 21,691,235 (+)NCBICHM1_1
T2T-CHM13v2.01320,331,500 - 20,342,169 (+)NCBIT2T-CHM13v2.0
Sap18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391458,035,646 - 58,042,437 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1458,035,637 - 58,044,095 (+)EnsemblGRCm39 Ensembl
GRCm381457,798,189 - 57,804,980 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1457,798,180 - 57,806,638 (+)EnsemblGRCm38mm10GRCm38
MGSCv371458,417,026 - 58,423,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361456,752,364 - 56,759,087 (+)NCBIMGSCv36mm8
Celera1455,594,725 - 55,601,516 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1430.51NCBI
Sap18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554971,867,771 - 1,869,974 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554971,862,026 - 1,869,974 (+)NCBIChiLan1.0ChiLan1.0
SAP18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21420,769,402 - 20,778,614 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11311,882,485 - 11,891,676 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0132,468,402 - 2,475,504 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11320,776,818 - 20,785,533 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1320,776,818 - 20,785,533 (+)Ensemblpanpan1.1panPan2
SAP18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12517,006,025 - 17,014,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2517,008,110 - 17,014,544 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2517,104,759 - 17,111,055 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02517,144,308 - 17,151,179 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2517,142,400 - 17,150,735 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12517,019,023 - 17,025,322 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02517,030,495 - 17,036,791 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02517,086,581 - 17,092,879 (-)NCBIUU_Cfam_GSD_1.0
Sap18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945119,062,918 - 119,068,973 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936720610,478 - 616,546 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936720610,478 - 616,529 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAP18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl111,291,202 - 1,298,983 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1111,290,195 - 1,298,990 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211427,644 - 433,170 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAP18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1363,736 - 72,521 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl361,957 - 72,524 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605744,543,593 - 44,553,130 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sap18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477616,451,980 - 16,457,276 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477616,451,980 - 16,457,323 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sap18
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:142
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000014397
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
D11Ertd539e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,657,619 - 86,657,821 (+)MAPPERmRatBN7.2
mRatBN7.21531,946,701 - 31,947,237 (+)MAPPERmRatBN7.2
Rnor_6.01538,072,793 - 38,073,328NCBIRnor6.0
Rnor_6.01089,635,935 - 89,636,136NCBIRnor6.0
Rnor_5.01089,432,161 - 89,432,362UniSTSRnor5.0
Rnor_5.01541,913,584 - 41,914,119UniSTSRnor5.0
RGSC_v3.41536,842,720 - 36,843,255UniSTSRGSC3.4
RGSC_v3.41090,759,309 - 90,759,510UniSTSRGSC3.4
Celera1531,657,362 - 31,657,897UniSTS
Cytogenetic Map10q32.1UniSTS
Cytogenetic Map15p12UniSTS
G61998  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,657,510 - 86,657,668 (+)MAPPERmRatBN7.2
Rnor_6.01089,635,826 - 89,635,983NCBIRnor6.0
Rnor_5.01089,432,052 - 89,432,209UniSTSRnor5.0
RGSC_v3.41090,759,200 - 90,759,357UniSTSRGSC3.4
Cytogenetic Map10q32.1UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 11 43 82 57 60 41 19 41 160 73 74 35 41 19

Sequence


Ensembl Acc Id: ENSRNOT00000014397   ⟹   ENSRNOP00000014397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1538,069,320 - 38,073,622 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100026   ⟹   ENSRNOP00000096081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1531,943,230 - 31,950,038 (+)Ensembl
RefSeq Acc Id: NM_001033685   ⟹   NP_001028857
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81536,058,784 - 36,063,089 (+)NCBI
mRatBN7.21531,943,228 - 31,947,534 (+)NCBI
Rnor_6.01538,069,320 - 38,073,625 (+)NCBI
Rnor_5.01541,910,111 - 41,914,416 (+)NCBI
RGSC_v3.41536,839,247 - 36,843,552 (+)RGD
Celera1531,653,889 - 31,658,194 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001028857 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI04707 (Get FASTA)   NCBI Sequence Viewer  
  EDM14358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000028179.3
  ENSRNOP00000096081.1
RefSeq Acc Id: NP_001028857   ⟸   NM_001033685
- UniProtKB: G3V7F6 (UniProtKB/TrEMBL),   A6KHC9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014397   ⟸   ENSRNOT00000014397
Ensembl Acc Id: ENSRNOP00000096081   ⟸   ENSRNOT00000100026

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7F6-F1-model_v2 AlphaFold G3V7F6 1-172 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699724
Promoter ID:EPDNEW_R10248
Type:initiation region
Name:Sap18_1
Description:Sin3A associated protein 18
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01538,069,314 - 38,069,374EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310388 AgrOrtholog
BioCyc Gene G2FUF-13594 BioCyc
Ensembl Genes ENSRNOG00000010732 Ensembl
  ENSRNOG00000020771 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000064694 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028179.5 UniProtKB/TrEMBL
  ENSRNOT00000100026.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.550 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7316605 IMAGE-MGC_LOAD
InterPro Hist_deAcase_cplx_SAP18 UniProtKB/TrEMBL
  SAP18 UniProtKB/TrEMBL
  SAP18_sf UniProtKB/TrEMBL
KEGG Report rno:290284 UniProtKB/TrEMBL
MGC_CLONE MGC:125107 IMAGE-MGC_LOAD
NCBI Gene 290284 ENTREZGENE
PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18 UniProtKB/TrEMBL
  SAP18 UniProtKB/TrEMBL
Pfam SAP18 UniProtKB/TrEMBL
PharmGKB SAP18 RGD
PhenoGen Sap18 PhenoGen
PIRSF HDAC_SAP18 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010732 RatGTEx
  ENSRNOG00000020771 RatGTEx
  ENSRNOG00000064694 RatGTEx
UniProt A6KHC9 ENTREZGENE, UniProtKB/TrEMBL
  G3V7F6 ENTREZGENE, UniProtKB/TrEMBL
  Q3MHS8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-24 Sap18  Sin3A associated protein 18  Sap18  Sin3-associated polypeptide 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sap18  Sin3-associated polypeptide 18  Sap18  sin3-associated polypeptide, 18kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sap18  sin3-associated polypeptide, 18kDa  Sap18_predicted  sin3-associated polypeptide, 18kDa (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sap18_predicted  sin3-associated polypeptide, 18kDa (predicted)      Symbol and Name status set to approved 70820 APPROVED