Tnpo2 (transportin 2) - Rat Genome Database

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Gene: Tnpo2 (transportin 2) Rattus norvegicus
Analyze
Symbol: Tnpo2
Name: transportin 2
RGD ID: 1310356
Description: Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within negative regulation of muscle cell differentiation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in intellectual developmental disorder with hypotonia, impaired speech, and dysmorphic facies. Orthologous to human TNPO2 (transportin 2); INTERACTS WITH 17beta-estradiol; 3-chloropropane-1,2-diol; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304670; transportin 2 (importin 3, karyopherin beta 2b); transportin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,004,271 - 40,024,565 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1940,004,275 - 40,024,187 (-)EnsemblGRCr8
mRatBN7.21923,099,398 - 23,119,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,099,401 - 23,119,596 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1929,922,018 - 29,941,905 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,576,382 - 30,596,269 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,799,067 - 32,818,953 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,149,671 - 26,171,812 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,151,900 - 26,171,808 (+)Ensemblrn6Rnor6.0
Rnor_5.01937,127,523 - 37,147,431 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41924,755,689 - 24,775,599 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1922,657,366 - 22,677,276 (-)NCBICelera
RGSC_v3.11924,762,264 - 24,780,697 (-)NCBI
Cytogenetic Map19q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17475777   PMID:25002582   PMID:26514267   PMID:28131823  


Genomics

Comparative Map Data
Tnpo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,004,271 - 40,024,565 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1940,004,275 - 40,024,187 (-)EnsemblGRCr8
mRatBN7.21923,099,398 - 23,119,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,099,401 - 23,119,596 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1929,922,018 - 29,941,905 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,576,382 - 30,596,269 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,799,067 - 32,818,953 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,149,671 - 26,171,812 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,151,900 - 26,171,808 (+)Ensemblrn6Rnor6.0
Rnor_5.01937,127,523 - 37,147,431 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41924,755,689 - 24,775,599 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1922,657,366 - 22,677,276 (-)NCBICelera
RGSC_v3.11924,762,264 - 24,780,697 (-)NCBI
Cytogenetic Map19q11NCBI
TNPO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,699,201 - 12,723,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,699,201 - 12,724,011 (-)Ensemblhg38GRCh38
GRCh371912,810,015 - 12,834,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,671,015 - 12,694,078 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341912,671,014 - 12,694,078NCBI
Celera1912,699,722 - 12,724,521 (-)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,383,321 - 12,408,047 (-)NCBIHuRef
CHM1_11912,810,514 - 12,835,309 (-)NCBICHM1_1
T2T-CHM13v2.01912,823,691 - 12,848,419 (-)NCBIT2T-CHM13v2.0
Tnpo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,763,502 - 85,784,214 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,763,544 - 85,784,212 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38885,036,873 - 85,057,585 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,036,915 - 85,057,583 (+)Ensemblmm10GRCm38
MGSCv37887,560,814 - 87,581,482 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36887,927,020 - 87,947,685 (+)NCBIMGSCv36mm8
Celera889,331,668 - 89,352,340 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.51NCBI
Tnpo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,807,701 - 31,826,919 (-)Ensembl
ChiLan1.0NW_00495541531,807,701 - 31,826,938 (-)NCBIChiLan1.0ChiLan1.0
TNPO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,628,110 - 17,653,699 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,628,668 - 16,654,236 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,261,026 - 12,286,571 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,006,110 - 13,032,317 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,006,110 - 13,032,317 (-)EnsemblpanPan2panpan1.1
TNPO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,407,842 - 49,424,220 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,407,152 - 49,424,752 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2049,281,439 - 49,297,799 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02049,926,256 - 49,942,676 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,926,323 - 49,941,476 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,137,325 - 49,153,713 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,563,664 - 49,580,225 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,806,342 - 49,822,747 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tnpo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,511,376 - 208,529,977 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,824,729 - 1,843,727 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,824,729 - 1,843,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNPO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,271,496 - 66,288,264 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1266,267,776 - 66,288,763 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,650,573 - 66,667,950 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNPO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,387,993 - 11,414,681 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,387,683 - 11,414,709 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660748,384,607 - 8,408,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnpo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901334,154 - 352,060 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624901334,277 - 351,653 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tnpo2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11715,234,581 - 15,255,553 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tnpo2
194 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:779
Count of miRNA genes:294
Interacting mature miRNAs:384
Transcripts:ENSRNOT00000005571
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)193009938347207961Rat

Markers in Region
AI852433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,099,764 - 23,099,909 (-)MAPPERmRatBN7.2
Rnor_6.01926,171,301 - 26,171,445NCBIRnor6.0
Rnor_5.01937,146,924 - 37,147,068UniSTSRnor5.0
RGSC_v3.41924,756,052 - 24,756,196UniSTSRGSC3.4
Celera1922,657,729 - 22,657,873UniSTS
Cytogenetic Map19q11UniSTS
RH144244  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,120,067 - 23,120,248 (-)MAPPERmRatBN7.2
Rnor_6.01926,150,971 - 26,151,151NCBIRnor6.0
Rnor_5.01937,126,594 - 37,126,774UniSTSRnor5.0
RGSC_v3.41924,776,349 - 24,776,529UniSTSRGSC3.4
Celera1922,678,026 - 22,678,206UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005571   ⟹   ENSRNOP00000005571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1940,004,275 - 40,024,187 (-)Ensembl
mRatBN7.2 Ensembl1923,099,401 - 23,119,256 (-)Ensembl
Rnor_6.0 Ensembl1926,151,900 - 26,171,808 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103099   ⟹   ENSRNOP00000082862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1923,114,062 - 23,119,596 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119606   ⟹   ENSRNOP00000094245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1940,006,396 - 40,024,187 (-)Ensembl
mRatBN7.2 Ensembl1923,099,401 - 23,119,256 (-)Ensembl
RefSeq Acc Id: NM_001107166   ⟹   NP_001100636
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,275 - 40,024,187 (-)NCBI
mRatBN7.21923,099,402 - 23,119,317 (-)NCBI
Rnor_6.01926,151,900 - 26,171,808 (+)NCBI
Rnor_5.01937,127,523 - 37,147,431 (+)NCBI
RGSC_v3.41924,755,689 - 24,775,599 (-)RGD
Celera1922,657,366 - 22,677,276 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601258   ⟹   XP_017456747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,024,334 (-)NCBI
mRatBN7.21923,099,398 - 23,119,469 (-)NCBI
Rnor_6.01926,151,877 - 26,171,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601259   ⟹   XP_017456748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,024,528 (-)NCBI
mRatBN7.21923,099,398 - 23,119,658 (-)NCBI
Rnor_6.01926,151,577 - 26,171,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601260   ⟹   XP_017456749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,024,565 (-)NCBI
mRatBN7.21923,099,398 - 23,119,696 (-)NCBI
Rnor_6.01926,151,556 - 26,171,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601261   ⟹   XP_017456750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,024,334 (-)NCBI
mRatBN7.21923,099,398 - 23,119,469 (-)NCBI
Rnor_6.01926,151,877 - 26,171,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601263   ⟹   XP_017456752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,024,333 (-)NCBI
mRatBN7.21923,099,398 - 23,119,317 (-)NCBI
Rnor_6.01926,151,878 - 26,171,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601264   ⟹   XP_017456753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,023,049 (-)NCBI
mRatBN7.21923,099,398 - 23,118,374 (-)NCBI
Rnor_6.01926,152,835 - 26,171,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097687   ⟹   XP_038953615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,020,798 (-)NCBI
mRatBN7.21923,099,398 - 23,115,930 (-)NCBI
RefSeq Acc Id: XM_063277973   ⟹   XP_063134043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,024,565 (-)NCBI
RefSeq Acc Id: XM_063277974   ⟹   XP_063134044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,004,271 - 40,023,049 (-)NCBI
RefSeq Acc Id: NP_001100636   ⟸   NM_001107166
- UniProtKB: A6IY37 (UniProtKB/TrEMBL),   A0A8I6AJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456749   ⟸   XM_017601260
- Peptide Label: isoform X1
- UniProtKB: D3ZER6 (UniProtKB/TrEMBL),   A0A8I6AJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456748   ⟸   XM_017601259
- Peptide Label: isoform X1
- UniProtKB: D3ZER6 (UniProtKB/TrEMBL),   A0A8I6AJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456747   ⟸   XM_017601258
- Peptide Label: isoform X1
- UniProtKB: D3ZER6 (UniProtKB/TrEMBL),   A0A8I6AJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456750   ⟸   XM_017601261
- Peptide Label: isoform X1
- UniProtKB: D3ZER6 (UniProtKB/TrEMBL),   A0A8I6AJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456752   ⟸   XM_017601263
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456753   ⟸   XM_017601264
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000005571   ⟸   ENSRNOT00000005571
RefSeq Acc Id: XP_038953615   ⟸   XM_039097687
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AJ53 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094245   ⟸   ENSRNOT00000119606
Ensembl Acc Id: ENSRNOP00000082862   ⟸   ENSRNOT00000103099
RefSeq Acc Id: XP_063134043   ⟸   XM_063277973
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJ53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134044   ⟸   XM_063277974
- Peptide Label: isoform X4
- UniProtKB: A6IY37 (UniProtKB/TrEMBL),   A0A8I6AJ53 (UniProtKB/TrEMBL)
Protein Domains
Importin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZER6-F1-model_v2 AlphaFold D3ZER6 1-913 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701038
Promoter ID:EPDNEW_R11561
Type:initiation region
Name:Tnpo2_1
Description:transportin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01926,151,894 - 26,151,954EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310356 AgrOrtholog
BioCyc Gene G2FUF-6143 BioCyc
Ensembl Genes ENSRNOG00000003970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005571 ENTREZGENE
  ENSRNOT00000005571.8 UniProtKB/TrEMBL
  ENSRNOT00000119606 ENTREZGENE
  ENSRNOT00000119606.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
  Importin-b_N UniProtKB/TrEMBL
  Importin_beta UniProtKB/TrEMBL
KEGG Report rno:304670 UniProtKB/TrEMBL
NCBI Gene 304670 ENTREZGENE
PANTHER PTHR10527 UniProtKB/TrEMBL
Pfam HEAT UniProtKB/TrEMBL
  HEAT_EZ UniProtKB/TrEMBL
  IBN_N UniProtKB/TrEMBL
  TPR_IMB1 UniProtKB/TrEMBL
PhenoGen Tnpo2 PhenoGen
RatGTEx ENSRNOG00000003970 RatGTEx
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AJ53 ENTREZGENE, UniProtKB/TrEMBL
  A6IY37 ENTREZGENE, UniProtKB/TrEMBL
  D3ZER6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Tnpo2  transportin 2 (importin 3, karyopherin beta 2b)   Tnpo2_predicted  transportin 2 (importin 3, karyopherin beta 2b) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tnpo2_predicted  transportin 2 (importin 3, karyopherin beta 2b) (predicted)      Symbol and Name status set to approved 70820 APPROVED