Mccc2 (methylcrotonyl-CoA carboxylase subunit 2) - Rat Genome Database

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Pathways
Gene: Mccc2 (methylcrotonyl-CoA carboxylase subunit 2) Rattus norvegicus
Analyze
Symbol: Mccc2
Name: methylcrotonyl-CoA carboxylase subunit 2
RGD ID: 1310279
Description: Contributes to methylcrotonoyl-CoA carboxylase activity. Involved in coenzyme A metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be part of methylcrotonoyl-CoA carboxylase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in 3-methylcrotonyl-CoA carboxylase 2 deficiency and mitochondrial metabolism disease. Orthologous to human MCCC2 (methylcrotonyl-CoA carboxylase subunit 2); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 3-methylcrotonyl-CoA carboxylase 2; 3-methylcrotonyl-CoA carboxylase non-biotin-containing subunit; 3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta; LOC361884; MCCase subunit beta; methylcrotonoyl-CoA carboxylase 2; methylcrotonoyl-CoA carboxylase 2 (beta); methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,039,044 - 33,110,092 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl233,039,045 - 33,110,299 (-)EnsemblGRCr8
mRatBN7.2231,304,927 - 31,375,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,304,932 - 31,375,972 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx238,383,154 - 38,454,061 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0236,477,507 - 36,548,413 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,270,308 - 31,341,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,175,017 - 30,246,028 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,175,018 - 30,246,010 (-)Ensemblrn6Rnor6.0
Rnor_5.0249,333,901 - 49,404,647 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4230,961,607 - 31,032,883 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera227,327,945 - 27,397,754 (-)NCBICelera
RGSC_v3.1230,881,976 - 30,953,252 (-)NCBI
Cytogenetic Map2q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrabromodibenzodioxine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
clopidogrel  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (EXP)
glafenine  (EXP)
irinotecan  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
N-nitrosomorpholine  (EXP)
nimesulide  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
phlorizin  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The molecular basis of 3-methylcrotonylglycinuria, a disorder of leucine catabolism. Gallardo ME, etal., Am J Hum Genet. 2001 Feb;68(2):334-46. Epub 2001 Jan 17.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Simultaneous preparation of the three biotin-containing mitochondrial carboxylases from rat liver. Oei J and Robinson BH, Biochim Biophys Acta. 1985 May 29;840(1):1-5.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14651853   PMID:16023992   PMID:17360195   PMID:18614015   PMID:26316108   PMID:31505169  


Genomics

Comparative Map Data
Mccc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,039,044 - 33,110,092 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl233,039,045 - 33,110,299 (-)EnsemblGRCr8
mRatBN7.2231,304,927 - 31,375,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,304,932 - 31,375,972 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx238,383,154 - 38,454,061 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0236,477,507 - 36,548,413 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,270,308 - 31,341,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,175,017 - 30,246,028 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,175,018 - 30,246,010 (-)Ensemblrn6Rnor6.0
Rnor_5.0249,333,901 - 49,404,647 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4230,961,607 - 31,032,883 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera227,327,945 - 27,397,754 (-)NCBICelera
RGSC_v3.1230,881,976 - 30,953,252 (-)NCBI
Cytogenetic Map2q12NCBI
MCCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38571,587,340 - 71,658,706 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl571,579,531 - 71,658,706 (+)Ensemblhg38GRCh38
GRCh37570,883,167 - 70,954,533 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36570,918,910 - 70,988,981 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34570,918,909 - 70,988,981NCBI
Celera566,778,848 - 66,850,229 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef566,088,903 - 66,160,527 (+)NCBIHuRef
CHM1_1570,315,816 - 70,387,189 (+)NCBICHM1_1
T2T-CHM13v2.0572,068,680 - 72,140,018 (+)NCBIT2T-CHM13v2.0
Mccc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913100,085,040 - 100,152,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13100,085,038 - 100,152,147 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381399,948,532 - 100,015,639 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1399,948,530 - 100,015,639 (-)Ensemblmm10GRCm38
MGSCv3713100,718,487 - 100,785,594 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3613101,048,783 - 101,115,886 (-)NCBIMGSCv36mm8
Celera13103,601,615 - 103,669,283 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.9NCBI
Mccc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955575445,619 - 505,040 (+)Ensembl
ChiLan1.0NW_004955575445,627 - 503,891 (+)NCBIChiLan1.0ChiLan1.0
MCCC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2443,651,293 - 43,726,414 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1541,804,951 - 41,880,028 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0543,650,993 - 43,724,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1544,298,650 - 44,369,106 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl544,298,650 - 44,369,106 (-)EnsemblpanPan2panpan1.1
MCCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,751,703 - 54,825,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,751,698 - 54,823,273 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha251,718,218 - 51,791,623 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0255,265,241 - 55,340,500 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl255,265,213 - 55,340,215 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1252,327,887 - 52,401,292 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0253,094,755 - 53,168,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,986,123 - 54,059,570 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mccc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213186,028,772 - 186,100,599 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365494,755,546 - 4,830,242 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365494,760,073 - 4,830,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1647,917,291 - 47,996,534 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11647,917,308 - 47,996,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21651,863,689 - 51,939,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MCCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1465,944,742 - 66,013,663 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl465,944,840 - 66,013,663 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604914,689,886 - 14,759,320 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mccc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624905645,715 - 712,364 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624905645,782 - 709,611 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mccc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13196,590,311 - 196,657,303 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mccc2
613 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:137
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000023900
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
RH131089  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,305,061 - 31,305,249 (+)MAPPERmRatBN7.2
Rnor_6.0230,175,148 - 30,175,335NCBIRnor6.0
Rnor_5.0249,334,031 - 49,334,218UniSTSRnor5.0
RGSC_v3.4230,961,737 - 30,961,924UniSTSRGSC3.4
Celera227,328,075 - 27,328,262UniSTS
RH 3.4 Map263.2UniSTS
Cytogenetic Map2q12UniSTS
AU049737  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,350,338 - 31,350,565 (+)MAPPERmRatBN7.2
Rnor_6.0230,220,271 - 30,220,497NCBIRnor6.0
Rnor_5.0249,379,001 - 49,379,227UniSTSRnor5.0
RGSC_v3.4231,007,101 - 31,007,327UniSTSRGSC3.4
Celera227,372,891 - 27,373,117UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 91 59 6 355 191 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023900   ⟹   ENSRNOP00000023900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl233,039,045 - 33,110,299 (-)Ensembl
mRatBN7.2 Ensembl231,304,933 - 31,375,957 (-)Ensembl
Rnor_6.0 Ensembl230,175,018 - 30,246,010 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl233,044,069 - 33,110,068 (-)Ensembl
mRatBN7.2 Ensembl231,304,932 - 31,375,972 (-)Ensembl
Rnor_6.0 Ensembl230,175,213 - 30,187,700 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096471   ⟹   ENSRNOP00000077574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl231,305,117 - 31,375,972 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108332   ⟹   ENSRNOP00000081925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl233,039,045 - 33,110,068 (-)Ensembl
mRatBN7.2 Ensembl231,304,933 - 31,375,957 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109895   ⟹   ENSRNOP00000083912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl233,039,045 - 33,110,227 (-)Ensembl
mRatBN7.2 Ensembl231,304,933 - 31,375,957 (-)Ensembl
RefSeq Acc Id: NM_001012177   ⟹   NP_001012177
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,039,044 - 33,110,068 (-)NCBI
mRatBN7.2231,304,932 - 31,375,957 (-)NCBI
Rnor_6.0230,175,018 - 30,246,010 (-)NCBI
Rnor_5.0249,333,901 - 49,404,647 (-)NCBI
RGSC_v3.4230,961,607 - 31,032,883 (-)RGD
Celera227,327,945 - 27,397,754 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102544   ⟹   XP_038958472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,039,044 - 33,110,092 (-)NCBI
mRatBN7.2231,304,927 - 31,375,978 (-)NCBI
RefSeq Acc Id: XM_039102546   ⟹   XP_038958474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,042,885 - 33,110,092 (-)NCBI
mRatBN7.2231,310,396 - 31,375,978 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001012177 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958472 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958474 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83581 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023900
  ENSRNOP00000023900.4
GenBank Protein Q5XIT9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001012177   ⟸   NM_001012177
- UniProtKB: Q5XIT9 (UniProtKB/Swiss-Prot),   A0A8I5ZSP4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023900   ⟸   ENSRNOT00000023900
RefSeq Acc Id: XP_038958472   ⟸   XM_039102544
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A3M2 (UniProtKB/TrEMBL),   A0A8I5ZSP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958474   ⟸   XM_039102546
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZSP4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081925   ⟸   ENSRNOT00000108332
Ensembl Acc Id: ENSRNOP00000077574   ⟸   ENSRNOT00000096471
Ensembl Acc Id: ENSRNOP00000083912   ⟸   ENSRNOT00000109895
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIT9-F1-model_v2 AlphaFold Q5XIT9 1-563 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691100
Promoter ID:EPDNEW_R1625
Type:initiation region
Name:Mccc2_1
Description:methylcrotonoyl-CoA carboxylase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0230,245,994 - 30,246,054EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310279 AgrOrtholog
BioCyc Gene G2FUF-54680 BioCyc
BioCyc Pathway LEU-DEG2-PWY [L-leucine degradation I] BioCyc
BioCyc Pathway Image LEU-DEG2-PWY BioCyc
Ensembl Genes ENSRNOG00000017752 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023900 ENTREZGENE
  ENSRNOT00000023900.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2-enoyl-CoA Hydratase, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7129446 IMAGE-MGC_LOAD
InterPro AcCoA_carboxyl UniProtKB/Swiss-Prot
  ClpP/crotonase-like_dom_sf UniProtKB/Swiss-Prot
  COA_CT_C UniProtKB/Swiss-Prot
  COA_CT_N UniProtKB/Swiss-Prot
  MCCB/AccD1-like UniProtKB/Swiss-Prot
KEGG Report rno:361884 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94191 IMAGE-MGC_LOAD
NCBI Gene 361884 ENTREZGENE
PANTHER METHYLCROTONOYL-COA CARBOXYLASE BETA CHAIN, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR22855 UniProtKB/Swiss-Prot
Pfam Carboxyl_trans UniProtKB/Swiss-Prot
PharmGKB MCCC2 RGD
PhenoGen Mccc2 PhenoGen
PROSITE COA_CT_CTER UniProtKB/Swiss-Prot
  COA_CT_NTER UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017752 RatGTEx
Superfamily-SCOP SSF52096 UniProtKB/Swiss-Prot
UniProt A0A8I5ZSP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A3M2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G9M3_RAT UniProtKB/TrEMBL
  MCCB_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Mccc2  methylcrotonyl-CoA carboxylase subunit 2  Mccc2  methylcrotonoyl-CoA carboxylase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-12-10 Mccc2  methylcrotonoyl-CoA carboxylase 2  Mccc2  methylcrotonoyl-CoA carboxylase 2 (beta)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Mccc2  methylcrotonoyl-CoA carboxylase 2 (beta)  Mccc2  methylcrotonoyl-Coenzyme A carboxylase 2 (beta)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Mccc2  methylcrotonoyl-Coenzyme A carboxylase 2 (beta)  Mccc2_predicted  methylcrotonoyl-Coenzyme A carboxylase 2 (beta) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mccc2_predicted  methylcrotonoyl-Coenzyme A carboxylase 2 (beta) (predicted)      Symbol and Name status set to approved 70820 APPROVED