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Gene: Zswim9 (zinc finger SWIM-type containing 9) Rattus norvegicus

Analyze

Symbol:

Zswim9

Name:

zinc finger SWIM-type containing 9

RGD ID:

1310257

Description:

Predicted to enable zinc ion binding activity. Predicted to act upstream of or within hematopoietic progenitor cell differentiation. Orthologous to human ZSWIM9 (zinc finger SWIM-type containing 9); INTERACTS WITH bisphenol A; thioacetamide; 3-isobutyl-1-methyl-7H-xanthine (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC308381; RGD1310257; similar to RIKEN cDNA 6330408A02 gene; uncharacterized protein C19orf68 homolog; uncharacterized protein LOC308381; uncharacterized protein ZSWIM9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZSWIM9 (zinc finger SWIM-type containing 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SPPL2C (signal peptide peptidase like 2C)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Zswim9 (zinc finger SWIM-type containing 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZSWIM9 (zinc finger SWIM-type containing 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZSWIM9 (zinc finger SWIM-type containing 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zswim9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zswim9	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100489703	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC100489703	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	83,222,133 - 83,243,116 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	83,219,907 - 83,243,312 (-)	Ensembl				GRCr8
mRatBN7.2	1	74,144,818 - 74,165,804 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	74,144,814 - 74,166,009 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	75,335,183 - 75,356,130 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	75,335,894 - 75,354,820 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	76,702,804 - 76,723,755 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	73,708,507 - 73,728,764 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	69,518,666 - 69,539,618 (-)	NCBI		Celera
RGSC_v3.1	1	73,786,759 - 73,805,609 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

polycystic ovary syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aristolochic acid A (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

copper(II) sulfate (ISO)

DDE (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

thiram (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (ISO)

Molecular Function

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:24029230

Genomics

Comparative Map Data

Zswim9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	83,222,133 - 83,243,116 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	83,219,907 - 83,243,312 (-)	Ensembl				GRCr8
mRatBN7.2	1	74,144,818 - 74,165,804 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	74,144,814 - 74,166,009 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	75,335,183 - 75,356,130 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	75,335,894 - 75,354,820 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	76,702,804 - 76,723,755 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	73,708,507 - 73,728,764 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	69,518,666 - 69,539,618 (-)	NCBI		Celera
RGSC_v3.1	1	73,786,759 - 73,805,609 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

ZSWIM9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	48,170,680 - 48,197,620 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	48,170,645 - 48,197,624 (+)	Ensembl			hg38	GRCh38
GRCh37	19	48,673,937 - 48,700,877 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	53,365,761 - 53,392,689 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	45,540,366 - 45,565,746 (+)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	45,055,777 - 45,082,825 (+)	NCBI		HuRef
CHM1_1	19	48,676,138 - 48,703,016 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	51,164,635 - 51,191,690 (+)	NCBI		T2T-CHM13v2.0

Zswim9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,992,894 - 13,012,647 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,992,894 - 13,012,647 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	13,258,967 - 13,278,721 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	13,258,967 - 13,278,721 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	13,844,316 - 13,864,070 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	12,159,146 - 12,177,659 (-)	NCBI		MGSCv36	mm8
Celera	7	10,875,646 - 10,895,401 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.82	NCBI

Zswim9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955609	99,352 - 118,133 (-)	Ensembl
ChiLan1.0	NW_004955609	99,805 - 118,177 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZSWIM9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	54,270,877 - 54,297,700 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	56,140,780 - 56,167,608 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	45,110,854 - 45,137,675 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	53,761,280 - 53,788,149 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	53,762,292 - 53,787,787 (+)	Ensembl			panPan2	panpan1.1

ZSWIM9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	108,082,355 - 108,105,380 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	108,082,185 - 108,104,934 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	107,565,071 - 107,588,190 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	108,608,431 - 108,631,370 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	108,608,614 - 108,631,824 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	108,253,263 - 108,276,059 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	107,921,686 - 107,944,385 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	108,789,525 - 108,811,681 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zswim9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	20,658,188 - 20,680,603 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	2,276,136 - 2,298,805 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	2,276,345 - 2,298,795 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZSWIM9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	53,660,330 - 53,678,043 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	53,660,222 - 53,678,145 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	49,244,764 - 49,262,636 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZSWIM9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	41,405,448 - 41,431,031 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	21,192,016 - 21,217,673 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zswim9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	5,650,179 - 5,665,808 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zswim9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	173,756,391 - 173,777,371 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zswim9
271 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	72
Interacting mature miRNAs:	78
Transcripts:	ENSRNOT00000018989, ENSRNOT00000064517
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

BE095766

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	74,144,868 - 74,145,040 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	75,335,234 - 75,335,405	NCBI	Rnor6.0
Rnor_5.0	1	76,702,855 - 76,703,026	UniSTS	Rnor5.0
RGSC_v3.4	1	73,707,989 - 73,708,160	UniSTS	RGSC3.4
Celera	1	69,518,717 - 69,518,888	UniSTS
RH 3.4 Map	1	765.59	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	91	59	6	354	191	11	141	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018989 ⟹ ENSRNOP00000018989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	83,221,843 - 83,243,266 (-)	Ensembl
mRatBN7.2 Ensembl	1	74,144,814 - 74,166,009 (-)	Ensembl
Rnor_6.0 Ensembl	1	75,335,894 - 75,354,820 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099778 ⟹ ENSRNOP00000082252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	74,144,814 - 74,165,493 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134020 ⟹ ENSRNOP00000105617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	83,219,907 - 83,243,312 (-)	Ensembl

RefSeq Acc Id:

XM_006228322 ⟹ XP_006228384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	83,222,133 - 83,243,116 (-)	NCBI
mRatBN7.2	1	74,144,818 - 74,165,804 (-)	NCBI
Rnor_6.0	1	75,335,183 - 75,356,130 (-)	NCBI
Rnor_5.0	1	76,702,804 - 76,723,755 (-)	NCBI

Sequence:

show sequence

AGGCAGTCTGGAAATGGGACAGAGTAAGGAGAGGAGGGGCGCTGTCCCGCATAGCATGCTGGGA
AGCGGCCCGGAGCCTATCCTCCCCGTGGATGAGCCGGGTCCCAAGATGGAGCTGACAGAGCCCT
CACCAAGCCCAGCAGTGCAGAAGGAGGAACAGGAATTGTTGGATCGAACCTTCTTCTCTTGGGC
TGAGTTCAGCCGATTCTTCGACAAGTGGTGCCAGCAGCGGCTGGTAGTCTTCTCCGTGAAGAGC
TCCACACGTGTGGCACGAAGCCCCTGGGCCAACACACCCCCACTCTACAGGCTTATCCACGTGC
TCAAGTATAGCTACGTGCTGCTGGTGTGCAAGGATGTACGCATGTCCAACAAGTCCACAGCGTG
GCCTCCCCAGCCCAGCTGCCCGGCCTTCATCACTGTCAAGCTGAGCCCTTTGCGAGATCGACTT
GTGGTGACTGAGTGCCAGCTGACCCACTCACACCCAGCCTGCCCACGCGAGTTTGCCTACCACT
TCCGCCCAGGCCACTTGCTAGCCAATTCCTGCCTGCCAGTCCGCATCACCAACCAGATCTCCAA
GCAGTTTGTGGCCCCTGCTGACGTGCACCGCCTGCTGACCCATTGCAAGGGCCCCGACCACGGG
GTCCTAGATGCCCTGCAAGTGCTTGAGGGGCTCTTCCGCACAGATCCAGAGGCCAAGGTGAAGC
TGGTGTTCGTGGAGGACCAAGCAATGGTAGAGAGTGTGTTCCTTCTGACATCGCGCACCAGGGC
ACTGCTGCGACGCTTCCCGCGCATCCTATTGGTGGACCGGCTGCCTGGGTTGCAGGGCGCGCTG
GACCTGATGGCAGTGCTGTGTGTGGACAGCGCTGGACGTGCACGCCAGGCTGCCTGTTGCGTGG
CGCGTCCTGGCACCCCTAGCCTGCTGCGATTCATGCTGGTCTCCCTGCTGCAAAGTGCTCCTGA
CGTCAAAGGGCGAGTGCGCTGCCTCACAGCTGGACCAGAGGTGGCTGGACAACTGCGTGCAGTT
CGGCAACTGTTGCCATGTGCTCGTGTTCAGATCTGTCGTGCTCAGGGTCTGGAGACGCTCTTCA
GTAAGGCACAGGAGTTAGGTGGTGCCAGCCAGGAGGATCCGGACCTGTGGCCACTCCTCTGCCG
CCTAGCAGATTCAAAATCCTATACAGCTTACAGTGAGGCACTGGCTGAGTTGCGTTCCCAGGCA
CCAACTGCCTTCATCAGATATTTTGAGCACAACTGGGCACCCCGCCATGACATGTGGGTACGTT
TCCGTGCCTACGAAGCAACCCGAGACCTTGATGCCTGTGCTCTAGTTCGAGGCCATCGCAGGCG
ACTCTTGCGACGCCTCAACCCCTCCCATAGTGTAGCTCAGTGCCTTCGTGACCTAGTGGCCATG
CAATGGGCTGATGCAACTGGAGAGGCAGCTTCAGAAGGTGTTAATGGTGACAGAGTGTTGTTGG
AAAGTGAACCCAGGAATAGGGCACAGATGGAGAAAGAGAAGGTGAGGGGCACAGAGGCCAGCAA
CTGGGGAAGGCCTGATCGAGAGAGTGAGAAAGGGAGGGGATTGCACTTGAGAGATAGTCAAGGA
GTCTGGTTAGAGAATCAGAAGGTGAGAGGGCCTGAAGGGACAGGAGCCCAGCTGGAAAAAGAGC
ATCTGAGAGAGCCAGAAGTCAGGGACTGGAAGGGAACCCAGACAGAGAATAGAAGGGTTAAGGT
ACTGGGGCCCACAGATCAGAGAGGCAACCAGGTTGAGTCTGAGAAGGCCAAGAGTCTTGAAGAA
AGGCCCCGGAGGGAGGTACAATTACAGGGTGAGAGGGCACGTGCACTGAAACCGCAAGACTGGA
AAGAGCCTCGTTTTGAAATAGAGAAAGGGATCGATGTTAGAAAGTGGAGAGAGGTCTATGTGGA
GAAGCCCTTAGAGTTAGTCCCTGAGAATGGAGATCAGAGGGGACCATACTTGGGAGCTGATGGG
CAGAAAGGGCCAGATATTGCAGAGGAGAGAAGTGGAAGGTTTCTAGTCAAAAGGAGACGGGGCC
TGGAGGACATTGTTGTTGTTCATTTAGAGGATGCGAGAGCTACAGGCATAGTGAATGGAAATGG
CGGAGGACCCCAACCTGTAGGTTTCAAGAATGGAGGACAGCAGATTGAGTTTGGGGATCCTGGG
GGGAGGCTTCCAGGAATAGGGAATGGTGTACCATGCACTACCCCTGTGCAGACTGTGCTGAAGG
GCAGTCCAGAATGGGCAGTGAACAGGGTTAAGTCCCTGGCTGCGGAAGATGCAGTTCAGGGAAG
AGATGAAGAAGGCCCCAGGGAACCAAAGAGGCTCTGCCGTCCCTGTAGGGATGAGGGAGTGGAC
TGTGAGCCACTAGCCAAGTTCCGAGCAGCGTGTGGGCCAGAGTTGGCTGATCTAGTGGCAGAGG
AGCTGGCCTTCGCCAGGCAGCACGGGACCCGAGGTTTCCACTGGACTGGAGCTGGCTTTGCCCT
TAAGGACGGCATCTCAGACTTCTTCCTGGATGGGGCCCTGACACACTGTAGCTGCTCCATCTAT
GCTGCCAGACACCTGCCCTGCAGACACCTTTTTGCAGCACGCCTCCTCACAGGGGCAGCCTTGT
TCCACGTGGACCTACTTAGAGATTGCTGGGGGAGATCTCAGGAACCCTGACCCTGTGTACTCCT
GCCTACTGCCCTCCACATGGAGGGGAAGAACATATTCTTTGATCCCAAAGATAATAGGGCTCAT
GCCCAGTGGGCCACCCCAGCCCTTCTAATCACCTCCTGAGACATCTAAGGACCTCTCTACATCC
TAGGGGATGCTGGCTATTATTTCTGAGATCCTGGAGCCACACCTATGGGTGTGCTAATGGCCAG
GGCACATTGAAAGGACATTACCCTGGAGAAGAAATACATGAGAAGAGATCATGAGAGACAGGGT
CAGACAAGACAAGACAAGAAAGAGATAGAGCTGAGGCAGAGGGAGGCACAGTGGAGGCCATGGA
AAGGAGCTAAGGTATAGGGACCTTATCACTGACAGGAGTAAAGACCGAGAGCCCTAGGGACTAT
AAGGTTGAAATGGCAAAAGCGAGGAAGGATGAGCAAAACTGAAGAGGAGAAAATATAGGAAGGA
GGCAAGAGATGGCTGGGGAAGTAAGCACGCAAGGAGAGAGGGTGATAAGGGGTAAGGATAGTTT
TTAAAAGGAGATGACAAAGCATAGGAAGACAAAAGATGATAGGATGACCTGGGGAGTTGGCCAT
TTCTCAGGGTAGGGCAGAGGAGATGGCTCTCTGGTGGAACAACCTACGTACTGCCTCAGAGGAA
AGGGAACTAAGTGAACAGCTGTGCTTTGAGATTGAAATAAACAGCATTATTTTGTTC

hide sequence

RefSeq Acc Id:

XM_006228323 ⟹ XP_006228385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	83,222,133 - 83,243,089 (-)	NCBI
mRatBN7.2	1	74,144,818 - 74,165,777 (-)	NCBI
Rnor_6.0	1	75,335,183 - 75,356,113 (-)	NCBI
Rnor_5.0	1	76,702,804 - 76,723,755 (-)	NCBI

Sequence:

show sequence

GACAGAGTAAGGAGAGGAGGGGCGCTGTCCCGCATAGCATGCTGGGAAGCGGCCCGGAGCCTAT
CCTCCCCGTGGATGAGCCGGTGAGGCTGCGAGGTCGTAAAGGGTCCCAAGATGGAGCTGACAGA
GCCCTCACCAAGCCCAGCAGTGCAGAAGGAGGAACAGGAATTGTTGGATCGAACCTTCTTCTCT
TGGGCTGAGTTCAGCCGATTCTTCGACAAGTGGTGCCAGCAGCGGCTGGTAGTCTTCTCCGTGA
AGAGCTCCACACGTGTGGCACGAAGCCCCTGGGCCAACACACCCCCACTCTACAGGCTTATCCA
CGTGCTCAAGTATAGCTACGTGCTGCTGGTGTGCAAGGATGTACGCATGTCCAACAAGTCCACA
GCGTGGCCTCCCCAGCCCAGCTGCCCGGCCTTCATCACTGTCAAGCTGAGCCCTTTGCGAGATC
GACTTGTGGTGACTGAGTGCCAGCTGACCCACTCACACCCAGCCTGCCCACGCGAGTTTGCCTA
CCACTTCCGCCCAGGCCACTTGCTAGCCAATTCCTGCCTGCCAGTCCGCATCACCAACCAGATC
TCCAAGCAGTTTGTGGCCCCTGCTGACGTGCACCGCCTGCTGACCCATTGCAAGGGCCCCGACC
ACGGGGTCCTAGATGCCCTGCAAGTGCTTGAGGGGCTCTTCCGCACAGATCCAGAGGCCAAGGT
GAAGCTGGTGTTCGTGGAGGACCAAGCAATGGTAGAGAGTGTGTTCCTTCTGACATCGCGCACC
AGGGCACTGCTGCGACGCTTCCCGCGCATCCTATTGGTGGACCGGCTGCCTGGGTTGCAGGGCG
CGCTGGACCTGATGGCAGTGCTGTGTGTGGACAGCGCTGGACGTGCACGCCAGGCTGCCTGTTG
CGTGGCGCGTCCTGGCACCCCTAGCCTGCTGCGATTCATGCTGGTCTCCCTGCTGCAAAGTGCT
CCTGACGTCAAAGGGCGAGTGCGCTGCCTCACAGCTGGACCAGAGGTGGCTGGACAACTGCGTG
CAGTTCGGCAACTGTTGCCATGTGCTCGTGTTCAGATCTGTCGTGCTCAGGGTCTGGAGACGCT
CTTCAGTAAGGCACAGGAGTTAGGTGGTGCCAGCCAGGAGGATCCGGACCTGTGGCCACTCCTC
TGCCGCCTAGCAGATTCAAAATCCTATACAGCTTACAGTGAGGCACTGGCTGAGTTGCGTTCCC
AGGCACCAACTGCCTTCATCAGATATTTTGAGCACAACTGGGCACCCCGCCATGACATGTGGGT
ACGTTTCCGTGCCTACGAAGCAACCCGAGACCTTGATGCCTGTGCTCTAGTTCGAGGCCATCGC
AGGCGACTCTTGCGACGCCTCAACCCCTCCCATAGTGTAGCTCAGTGCCTTCGTGACCTAGTGG
CCATGCAATGGGCTGATGCAACTGGAGAGGCAGCTTCAGAAGGTGTTAATGGTGACAGAGTGTT
GTTGGAAAGTGAACCCAGGAATAGGGCACAGATGGAGAAAGAGAAGGTGAGGGGCACAGAGGCC
AGCAACTGGGGAAGGCCTGATCGAGAGAGTGAGAAAGGGAGGGGATTGCACTTGAGAGATAGTC
AAGGAGTCTGGTTAGAGAATCAGAAGGTGAGAGGGCCTGAAGGGACAGGAGCCCAGCTGGAAAA
AGAGCATCTGAGAGAGCCAGAAGTCAGGGACTGGAAGGGAACCCAGACAGAGAATAGAAGGGTT
AAGGTACTGGGGCCCACAGATCAGAGAGGCAACCAGGTTGAGTCTGAGAAGGCCAAGAGTCTTG
AAGAAAGGCCCCGGAGGGAGGTACAATTACAGGGTGAGAGGGCACGTGCACTGAAACCGCAAGA
CTGGAAAGAGCCTCGTTTTGAAATAGAGAAAGGGATCGATGTTAGAAAGTGGAGAGAGGTCTAT
GTGGAGAAGCCCTTAGAGTTAGTCCCTGAGAATGGAGATCAGAGGGGACCATACTTGGGAGCTG
ATGGGCAGAAAGGGCCAGATATTGCAGAGGAGAGAAGTGGAAGGTTTCTAGTCAAAAGGAGACG
GGGCCTGGAGGACATTGTTGTTGTTCATTTAGAGGATGCGAGAGCTACAGGCATAGTGAATGGA
AATGGCGGAGGACCCCAACCTGTAGGTTTCAAGAATGGAGGACAGCAGATTGAGTTTGGGGATC
CTGGGGGGAGGCTTCCAGGAATAGGGAATGGTGTACCATGCACTACCCCTGTGCAGACTGTGCT
GAAGGGCAGTCCAGAATGGGCAGTGAACAGGGTTAAGTCCCTGGCTGCGGAAGATGCAGTTCAG
GGAAGAGATGAAGAAGGCCCCAGGGAACCAAAGAGGCTCTGCCGTCCCTGTAGGGATGAGGGAG
TGGACTGTGAGCCACTAGCCAAGTTCCGAGCAGCGTGTGGGCCAGAGTTGGCTGATCTAGTGGC
AGAGGAGCTGGCCTTCGCCAGGCAGCACGGGACCCGAGGTTTCCACTGGACTGGAGCTGGCTTT
GCCCTTAAGGACGGCATCTCAGACTTCTTCCTGGATGGGGCCCTGACACACTGTAGCTGCTCCA
TCTATGCTGCCAGACACCTGCCCTGCAGACACCTTTTTGCAGCACGCCTCCTCACAGGGGCAGC
CTTGTTCCACGTGGACCTACTTAGAGATTGCTGGGGGAGATCTCAGGAACCCTGACCCTGTGTA
CTCCTGCCTACTGCCCTCCACATGGAGGGGAAGAACATATTCTTTGATCCCAAAGATAATAGGG
CTCATGCCCAGTGGGCCACCCCAGCCCTTCTAATCACCTCCTGAGACATCTAAGGACCTCTCTA
CATCCTAGGGGATGCTGGCTATTATTTCTGAGATCCTGGAGCCACACCTATGGGTGTGCTAATG
GCCAGGGCACATTGAAAGGACATTACCCTGGAGAAGAAATACATGAGAAGAGATCATGAGAGAC
AGGGTCAGACAAGACAAGACAAGAAAGAGATAGAGCTGAGGCAGAGGGAGGCACAGTGGAGGCC
ATGGAAAGGAGCTAAGGTATAGGGACCTTATCACTGACAGGAGTAAAGACCGAGAGCCCTAGGG
ACTATAAGGTTGAAATGGCAAAAGCGAGGAAGGATGAGCAAAACTGAAGAGGAGAAAATATAGG
AAGGAGGCAAGAGATGGCTGGGGAAGTAAGCACGCAAGGAGAGAGGGTGATAAGGGGTAAGGAT
AGTTTTTAAAAGGAGATGACAAAGCATAGGAAGACAAAAGATGATAGGATGACCTGGGGAGTTG
GCCATTTCTCAGGGTAGGGCAGAGGAGATGGCTCTCTGGTGGAACAACCTACGTACTGCCTCAG
AGGAAAGGGAACTAAGTGAACAGCTGTGCTTTGAGATTGAAATAAACAGCATTATTTTGTTC

hide sequence

RefSeq Acc Id:

XM_006228324 ⟹ XP_006228386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	83,222,133 - 83,242,948 (-)	NCBI
mRatBN7.2	1	74,144,818 - 74,165,628 (-)	NCBI
Rnor_6.0	1	75,335,183 - 75,356,002 (-)	NCBI
Rnor_5.0	1	76,702,804 - 76,723,755 (-)	NCBI

Sequence:

show sequence

GTCGGGGAGAGGAGAAGGGCTGGTGGAAAGCCACCTTGTCAGGCACTGGGGGAAGAAAGGCGGG
ATACCGCGCGGGGCATCCCGGGAGCAAGGGCCGGGCCGGGTTTGGGCGCGGGGCATTGTGGGAG
GTGGACGCCGCTTTGGGTTGGGGTCCCAAGATGGAGCTGACAGAGCCCTCACCAAGCCCAGCAG
TGCAGAAGGAGGAACAGGAATTGTTGGATCGAACCTTCTTCTCTTGGGCTGAGTTCAGCCGATT
CTTCGACAAGTGGTGCCAGCAGCGGCTGGTAGTCTTCTCCGTGAAGAGCTCCACACGTGTGGCA
CGAAGCCCCTGGGCCAACACACCCCCACTCTACAGGCTTATCCACGTGCTCAAGTATAGCTACG
TGCTGCTGGTGTGCAAGGATGTACGCATGTCCAACAAGTCCACAGCGTGGCCTCCCCAGCCCAG
CTGCCCGGCCTTCATCACTGTCAAGCTGAGCCCTTTGCGAGATCGACTTGTGGTGACTGAGTGC
CAGCTGACCCACTCACACCCAGCCTGCCCACGCGAGTTTGCCTACCACTTCCGCCCAGGCCACT
TGCTAGCCAATTCCTGCCTGCCAGTCCGCATCACCAACCAGATCTCCAAGCAGTTTGTGGCCCC
TGCTGACGTGCACCGCCTGCTGACCCATTGCAAGGGCCCCGACCACGGGGTCCTAGATGCCCTG
CAAGTGCTTGAGGGGCTCTTCCGCACAGATCCAGAGGCCAAGGTGAAGCTGGTGTTCGTGGAGG
ACCAAGCAATGGTAGAGAGTGTGTTCCTTCTGACATCGCGCACCAGGGCACTGCTGCGACGCTT
CCCGCGCATCCTATTGGTGGACCGGCTGCCTGGGTTGCAGGGCGCGCTGGACCTGATGGCAGTG
CTGTGTGTGGACAGCGCTGGACGTGCACGCCAGGCTGCCTGTTGCGTGGCGCGTCCTGGCACCC
CTAGCCTGCTGCGATTCATGCTGGTCTCCCTGCTGCAAAGTGCTCCTGACGTCAAAGGGCGAGT
GCGCTGCCTCACAGCTGGACCAGAGGTGGCTGGACAACTGCGTGCAGTTCGGCAACTGTTGCCA
TGTGCTCGTGTTCAGATCTGTCGTGCTCAGGGTCTGGAGACGCTCTTCAGTAAGGCACAGGAGT
TAGGTGGTGCCAGCCAGGAGGATCCGGACCTGTGGCCACTCCTCTGCCGCCTAGCAGATTCAAA
ATCCTATACAGCTTACAGTGAGGCACTGGCTGAGTTGCGTTCCCAGGCACCAACTGCCTTCATC
AGATATTTTGAGCACAACTGGGCACCCCGCCATGACATGTGGGTACGTTTCCGTGCCTACGAAG
CAACCCGAGACCTTGATGCCTGTGCTCTAGTTCGAGGCCATCGCAGGCGACTCTTGCGACGCCT
CAACCCCTCCCATAGTGTAGCTCAGTGCCTTCGTGACCTAGTGGCCATGCAATGGGCTGATGCA
ACTGGAGAGGCAGCTTCAGAAGGTGTTAATGGTGACAGAGTGTTGTTGGAAAGTGAACCCAGGA
ATAGGGCACAGATGGAGAAAGAGAAGGTGAGGGGCACAGAGGCCAGCAACTGGGGAAGGCCTGA
TCGAGAGAGTGAGAAAGGGAGGGGATTGCACTTGAGAGATAGTCAAGGAGTCTGGTTAGAGAAT
CAGAAGGTGAGAGGGCCTGAAGGGACAGGAGCCCAGCTGGAAAAAGAGCATCTGAGAGAGCCAG
AAGTCAGGGACTGGAAGGGAACCCAGACAGAGAATAGAAGGGTTAAGGTACTGGGGCCCACAGA
TCAGAGAGGCAACCAGGTTGAGTCTGAGAAGGCCAAGAGTCTTGAAGAAAGGCCCCGGAGGGAG
GTACAATTACAGGGTGAGAGGGCACGTGCACTGAAACCGCAAGACTGGAAAGAGCCTCGTTTTG
AAATAGAGAAAGGGATCGATGTTAGAAAGTGGAGAGAGGTCTATGTGGAGAAGCCCTTAGAGTT
AGTCCCTGAGAATGGAGATCAGAGGGGACCATACTTGGGAGCTGATGGGCAGAAAGGGCCAGAT
ATTGCAGAGGAGAGAAGTGGAAGGTTTCTAGTCAAAAGGAGACGGGGCCTGGAGGACATTGTTG
TTGTTCATTTAGAGGATGCGAGAGCTACAGGCATAGTGAATGGAAATGGCGGAGGACCCCAACC
TGTAGGTTTCAAGAATGGAGGACAGCAGATTGAGTTTGGGGATCCTGGGGGGAGGCTTCCAGGA
ATAGGGAATGGTGTACCATGCACTACCCCTGTGCAGACTGTGCTGAAGGGCAGTCCAGAATGGG
CAGTGAACAGGGTTAAGTCCCTGGCTGCGGAAGATGCAGTTCAGGGAAGAGATGAAGAAGGCCC
CAGGGAACCAAAGAGGCTCTGCCGTCCCTGTAGGGATGAGGGAGTGGACTGTGAGCCACTAGCC
AAGTTCCGAGCAGCGTGTGGGCCAGAGTTGGCTGATCTAGTGGCAGAGGAGCTGGCCTTCGCCA
GGCAGCACGGGACCCGAGGTTTCCACTGGACTGGAGCTGGCTTTGCCCTTAAGGACGGCATCTC
AGACTTCTTCCTGGATGGGGCCCTGACACACTGTAGCTGCTCCATCTATGCTGCCAGACACCTG
CCCTGCAGACACCTTTTTGCAGCACGCCTCCTCACAGGGGCAGCCTTGTTCCACGTGGACCTAC
TTAGAGATTGCTGGGGGAGATCTCAGGAACCCTGACCCTGTGTACTCCTGCCTACTGCCCTCCA
CATGGAGGGGAAGAACATATTCTTTGATCCCAAAGATAATAGGGCTCATGCCCAGTGGGCCACC
CCAGCCCTTCTAATCACCTCCTGAGACATCTAAGGACCTCTCTACATCCTAGGGGATGCTGGCT
ATTATTTCTGAGATCCTGGAGCCACACCTATGGGTGTGCTAATGGCCAGGGCACATTGAAAGGA
CATTACCCTGGAGAAGAAATACATGAGAAGAGATCATGAGAGACAGGGTCAGACAAGACAAGAC
AAGAAAGAGATAGAGCTGAGGCAGAGGGAGGCACAGTGGAGGCCATGGAAAGGAGCTAAGGTAT
AGGGACCTTATCACTGACAGGAGTAAAGACCGAGAGCCCTAGGGACTATAAGGTTGAAATGGCA
AAAGCGAGGAAGGATGAGCAAAACTGAAGAGGAGAAAATATAGGAAGGAGGCAAGAGATGGCTG
GGGAAGTAAGCACGCAAGGAGAGAGGGTGATAAGGGGTAAGGATAGTTTTTAAAAGGAGATGAC
AAAGCATAGGAAGACAAAAGATGATAGGATGACCTGGGGAGTTGGCCATTTCTCAGGGTAGGGC
AGAGGAGATGGCTCTCTGGTGGAACAACCTACGTACTGCCTCAGAGGAAAGGGAACTAAGTGAA
CAGCTGTGCTTTGAGATTGAAATAAACAGCATTATTTTGTTC

hide sequence

RefSeq Acc Id:

XM_006228325 ⟹ XP_006228387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	83,222,133 - 83,242,931 (-)	NCBI
mRatBN7.2	1	74,144,818 - 74,165,617 (-)	NCBI
Rnor_6.0	1	75,335,183 - 75,356,002 (-)	NCBI
Rnor_5.0	1	76,702,804 - 76,723,755 (-)	NCBI

Sequence:

show sequence

GTCGGGGAGAGGAGAAGGGCTGGTGGAAAGCCACCTTGTCAGGCACTGGGGGAAGAAAGGCGGG
ATACCGCGCGGGGCATCCCGGGAGCAAGGGCCGGGCCGGGTTTGGGCGCGGGGCATTGTGGGAG
GTGGACGCCGCTTTGGGTTGGGTAGGGTCCCAAGATGGAGCTGACAGAGCCCTCACCAAGCCCA
GCAGTGCAGAAGGAGGAACAGGAATTGTTGGATCGAACCTTCTTCTCTTGGGCTGAGTTCAGCC
GATTCTTCGACAAGTGGTGCCAGCAGCGGCTGGTAGTCTTCTCCGTGAAGAGCTCCACACGTGT
GGCACGAAGCCCCTGGGCCAACACACCCCCACTCTACAGGCTTATCCACGTGCTCAAGTATAGC
TACGTGCTGCTGGTGTGCAAGGATGTACGCATGTCCAACAAGTCCACAGCGTGGCCTCCCCAGC
CCAGCTGCCCGGCCTTCATCACTGTCAAGCTGAGCCCTTTGCGAGATCGACTTGTGGTGACTGA
GTGCCAGCTGACCCACTCACACCCAGCCTGCCCACGCGAGTTTGCCTACCACTTCCGCCCAGGC
CACTTGCTAGCCAATTCCTGCCTGCCAGTCCGCATCACCAACCAGATCTCCAAGCAGTTTGTGG
CCCCTGCTGACGTGCACCGCCTGCTGACCCATTGCAAGGGCCCCGACCACGGGGTCCTAGATGC
CCTGCAAGTGCTTGAGGGGCTCTTCCGCACAGATCCAGAGGCCAAGGTGAAGCTGGTGTTCGTG
GAGGACCAAGCAATGGTAGAGAGTGTGTTCCTTCTGACATCGCGCACCAGGGCACTGCTGCGAC
GCTTCCCGCGCATCCTATTGGTGGACCGGCTGCCTGGGTTGCAGGGCGCGCTGGACCTGATGGC
AGTGCTGTGTGTGGACAGCGCTGGACGTGCACGCCAGGCTGCCTGTTGCGTGGCGCGTCCTGGC
ACCCCTAGCCTGCTGCGATTCATGCTGGTCTCCCTGCTGCAAAGTGCTCCTGACGTCAAAGGGC
GAGTGCGCTGCCTCACAGCTGGACCAGAGGTGGCTGGACAACTGCGTGCAGTTCGGCAACTGTT
GCCATGTGCTCGTGTTCAGATCTGTCGTGCTCAGGGTCTGGAGACGCTCTTCAGTAAGGCACAG
GAGTTAGGTGGTGCCAGCCAGGAGGATCCGGACCTGTGGCCACTCCTCTGCCGCCTAGCAGATT
CAAAATCCTATACAGCTTACAGTGAGGCACTGGCTGAGTTGCGTTCCCAGGCACCAACTGCCTT
CATCAGATATTTTGAGCACAACTGGGCACCCCGCCATGACATGTGGGTACGTTTCCGTGCCTAC
GAAGCAACCCGAGACCTTGATGCCTGTGCTCTAGTTCGAGGCCATCGCAGGCGACTCTTGCGAC
GCCTCAACCCCTCCCATAGTGTAGCTCAGTGCCTTCGTGACCTAGTGGCCATGCAATGGGCTGA
TGCAACTGGAGAGGCAGCTTCAGAAGGTGTTAATGGTGACAGAGTGTTGTTGGAAAGTGAACCC
AGGAATAGGGCACAGATGGAGAAAGAGAAGGTGAGGGGCACAGAGGCCAGCAACTGGGGAAGGC
CTGATCGAGAGAGTGAGAAAGGGAGGGGATTGCACTTGAGAGATAGTCAAGGAGTCTGGTTAGA
GAATCAGAAGGTGAGAGGGCCTGAAGGGACAGGAGCCCAGCTGGAAAAAGAGCATCTGAGAGAG
CCAGAAGTCAGGGACTGGAAGGGAACCCAGACAGAGAATAGAAGGGTTAAGGTACTGGGGCCCA
CAGATCAGAGAGGCAACCAGGTTGAGTCTGAGAAGGCCAAGAGTCTTGAAGAAAGGCCCCGGAG
GGAGGTACAATTACAGGGTGAGAGGGCACGTGCACTGAAACCGCAAGACTGGAAAGAGCCTCGT
TTTGAAATAGAGAAAGGGATCGATGTTAGAAAGTGGAGAGAGGTCTATGTGGAGAAGCCCTTAG
AGTTAGTCCCTGAGAATGGAGATCAGAGGGGACCATACTTGGGAGCTGATGGGCAGAAAGGGCC
AGATATTGCAGAGGAGAGAAGTGGAAGGTTTCTAGTCAAAAGGAGACGGGGCCTGGAGGACATT
GTTGTTGTTCATTTAGAGGATGCGAGAGCTACAGGCATAGTGAATGGAAATGGCGGAGGACCCC
AACCTGTAGGTTTCAAGAATGGAGGACAGCAGATTGAGTTTGGGGATCCTGGGGGGAGGCTTCC
AGGAATAGGGAATGGTGTACCATGCACTACCCCTGTGCAGACTGTGCTGAAGGGCAGTCCAGAA
TGGGCAGTGAACAGGGTTAAGTCCCTGGCTGCGGAAGATGCAGTTCAGGGAAGAGATGAAGAAG
GCCCCAGGGAACCAAAGAGGCTCTGCCGTCCCTGTAGGGATGAGGGAGTGGACTGTGAGCCACT
AGCCAAGTTCCGAGCAGCGTGTGGGCCAGAGTTGGCTGATCTAGTGGCAGAGGAGCTGGCCTTC
GCCAGGCAGCACGGGACCCGAGGTTTCCACTGGACTGGAGCTGGCTTTGCCCTTAAGGACGGCA
TCTCAGACTTCTTCCTGGATGGGGCCCTGACACACTGTAGCTGCTCCATCTATGCTGCCAGACA
CCTGCCCTGCAGACACCTTTTTGCAGCACGCCTCCTCACAGGGGCAGCCTTGTTCCACGTGGAC
CTACTTAGAGATTGCTGGGGGAGATCTCAGGAACCCTGACCCTGTGTACTCCTGCCTACTGCCC
TCCACATGGAGGGGAAGAACATATTCTTTGATCCCAAAGATAATAGGGCTCATGCCCAGTGGGC
CACCCCAGCCCTTCTAATCACCTCCTGAGACATCTAAGGACCTCTCTACATCCTAGGGGATGCT
GGCTATTATTTCTGAGATCCTGGAGCCACACCTATGGGTGTGCTAATGGCCAGGGCACATTGAA
AGGACATTACCCTGGAGAAGAAATACATGAGAAGAGATCATGAGAGACAGGGTCAGACAAGACA
AGACAAGAAAGAGATAGAGCTGAGGCAGAGGGAGGCACAGTGGAGGCCATGGAAAGGAGCTAAG
GTATAGGGACCTTATCACTGACAGGAGTAAAGACCGAGAGCCCTAGGGACTATAAGGTTGAAAT
GGCAAAAGCGAGGAAGGATGAGCAAAACTGAAGAGGAGAAAATATAGGAAGGAGGCAAGAGATG
GCTGGGGAAGTAAGCACGCAAGGAGAGAGGGTGATAAGGGGTAAGGATAGTTTTTAAAAGGAGA
TGACAAAGCATAGGAAGACAAAAGATGATAGGATGACCTGGGGAGTTGGCCATTTCTCAGGGTA
GGGCAGAGGAGATGGCTCTCTGGTGGAACAACCTACGTACTGCCTCAGAGGAAAGGGAACTAAG
TGAACAGCTGTGCTTTGAGATTGAAATAAACAGCATTATTTTGTTC

hide sequence

RefSeq Acc Id:

XM_017589984 ⟹ XP_017445473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	83,222,133 - 83,242,757 (-)	NCBI
mRatBN7.2	1	74,144,818 - 74,165,456 (-)	NCBI
Rnor_6.0	1	75,335,183 - 75,355,819 (-)	NCBI

Sequence:

show sequence

TGCACAGCTTTGGGAGTGGAGAAGCACCGTTGTGTGGGATGGTCAGGCCGGGAGGAGCGGAGGG
GAGACGGGTTGGGAGAGTCTCTAAAAGTGGGAACTGGATAAAAGGGGCTGTGCAAGGGAAAAGA
GGCTTAGCCGGACGTGAGGGATGCAGGGAGAACATTAGAAGTGAAGAAGCCCATCTGAAGACAA
GGGGCCATGTCCAGTACGAAGATACACATTGAAAATAATAGATAAGCTACTGCTGGGAAGAGGG
GGCTGCAACTTAGCCCAATAGGAGAGGTCCCAAGATGGAGCTGACAGAGCCCTCACCAAGCCCA
GCAGTGCAGAAGGAGGAACAGGAATTGTTGGATCGAACCTTCTTCTCTTGGGCTGAGTTCAGCC
GATTCTTCGACAAGTGGTGCCAGCAGCGGCTGGTAGTCTTCTCCGTGAAGAGCTCCACACGTGT
GGCACGAAGCCCCTGGGCCAACACACCCCCACTCTACAGGCTTATCCACGTGCTCAAGTATAGC
TACGTGCTGCTGGTGTGCAAGGATGTACGCATGTCCAACAAGTCCACAGCGTGGCCTCCCCAGC
CCAGCTGCCCGGCCTTCATCACTGTCAAGCTGAGCCCTTTGCGAGATCGACTTGTGGTGACTGA
GTGCCAGCTGACCCACTCACACCCAGCCTGCCCACGCGAGTTTGCCTACCACTTCCGCCCAGGC
CACTTGCTAGCCAATTCCTGCCTGCCAGTCCGCATCACCAACCAGATCTCCAAGCAGTTTGTGG
CCCCTGCTGACGTGCACCGCCTGCTGACCCATTGCAAGGGCCCCGACCACGGGGTCCTAGATGC
CCTGCAAGTGCTTGAGGGGCTCTTCCGCACAGATCCAGAGGCCAAGGTGAAGCTGGTGTTCGTG
GAGGACCAAGCAATGGTAGAGAGTGTGTTCCTTCTGACATCGCGCACCAGGGCACTGCTGCGAC
GCTTCCCGCGCATCCTATTGGTGGACCGGCTGCCTGGGTTGCAGGGCGCGCTGGACCTGATGGC
AGTGCTGTGTGTGGACAGCGCTGGACGTGCACGCCAGGCTGCCTGTTGCGTGGCGCGTCCTGGC
ACCCCTAGCCTGCTGCGATTCATGCTGGTCTCCCTGCTGCAAAGTGCTCCTGACGTCAAAGGGC
GAGTGCGCTGCCTCACAGCTGGACCAGAGGTGGCTGGACAACTGCGTGCAGTTCGGCAACTGTT
GCCATGTGCTCGTGTTCAGATCTGTCGTGCTCAGGGTCTGGAGACGCTCTTCAGTAAGGCACAG
GAGTTAGGTGGTGCCAGCCAGGAGGATCCGGACCTGTGGCCACTCCTCTGCCGCCTAGCAGATT
CAAAATCCTATACAGCTTACAGTGAGGCACTGGCTGAGTTGCGTTCCCAGGCACCAACTGCCTT
CATCAGATATTTTGAGCACAACTGGGCACCCCGCCATGACATGTGGGTACGTTTCCGTGCCTAC
GAAGCAACCCGAGACCTTGATGCCTGTGCTCTAGTTCGAGGCCATCGCAGGCGACTCTTGCGAC
GCCTCAACCCCTCCCATAGTGTAGCTCAGTGCCTTCGTGACCTAGTGGCCATGCAATGGGCTGA
TGCAACTGGAGAGGCAGCTTCAGAAGGTGTTAATGGTGACAGAGTGTTGTTGGAAAGTGAACCC
AGGAATAGGGCACAGATGGAGAAAGAGAAGGTGAGGGGCACAGAGGCCAGCAACTGGGGAAGGC
CTGATCGAGAGAGTGAGAAAGGGAGGGGATTGCACTTGAGAGATAGTCAAGGAGTCTGGTTAGA
GAATCAGAAGGTGAGAGGGCCTGAAGGGACAGGAGCCCAGCTGGAAAAAGAGCATCTGAGAGAG
CCAGAAGTCAGGGACTGGAAGGGAACCCAGACAGAGAATAGAAGGGTTAAGGTACTGGGGCCCA
CAGATCAGAGAGGCAACCAGGTTGAGTCTGAGAAGGCCAAGAGTCTTGAAGAAAGGCCCCGGAG
GGAGGTACAATTACAGGGTGAGAGGGCACGTGCACTGAAACCGCAAGACTGGAAAGAGCCTCGT
TTTGAAATAGAGAAAGGGATCGATGTTAGAAAGTGGAGAGAGGTCTATGTGGAGAAGCCCTTAG
AGTTAGTCCCTGAGAATGGAGATCAGAGGGGACCATACTTGGGAGCTGATGGGCAGAAAGGGCC
AGATATTGCAGAGGAGAGAAGTGGAAGGTTTCTAGTCAAAAGGAGACGGGGCCTGGAGGACATT
GTTGTTGTTCATTTAGAGGATGCGAGAGCTACAGGCATAGTGAATGGAAATGGCGGAGGACCCC
AACCTGTAGGTTTCAAGAATGGAGGACAGCAGATTGAGTTTGGGGATCCTGGGGGGAGGCTTCC
AGGAATAGGGAATGGTGTACCATGCACTACCCCTGTGCAGACTGTGCTGAAGGGCAGTCCAGAA
TGGGCAGTGAACAGGGTTAAGTCCCTGGCTGCGGAAGATGCAGTTCAGGGAAGAGATGAAGAAG
GCCCCAGGGAACCAAAGAGGCTCTGCCGTCCCTGTAGGGATGAGGGAGTGGACTGTGAGCCACT
AGCCAAGTTCCGAGCAGCGTGTGGGCCAGAGTTGGCTGATCTAGTGGCAGAGGAGCTGGCCTTC
GCCAGGCAGCACGGGACCCGAGGTTTCCACTGGACTGGAGCTGGCTTTGCCCTTAAGGACGGCA
TCTCAGACTTCTTCCTGGATGGGGCCCTGACACACTGTAGCTGCTCCATCTATGCTGCCAGACA
CCTGCCCTGCAGACACCTTTTTGCAGCACGCCTCCTCACAGGGGCAGCCTTGTTCCACGTGGAC
CTACTTAGAGATTGCTGGGGGAGATCTCAGGAACCCTGACCCTGTGTACTCCTGCCTACTGCCC
TCCACATGGAGGGGAAGAACATATTCTTTGATCCCAAAGATAATAGGGCTCATGCCCAGTGGGC
CACCCCAGCCCTTCTAATCACCTCCTGAGACATCTAAGGACCTCTCTACATCCTAGGGGATGCT
GGCTATTATTTCTGAGATCCTGGAGCCACACCTATGGGTGTGCTAATGGCCAGGGCACATTGAA
AGGACATTACCCTGGAGAAGAAATACATGAGAAGAGATCATGAGAGACAGGGTCAGACAAGACA
AGACAAGAAAGAGATAGAGCTGAGGCAGAGGGAGGCACAGTGGAGGCCATGGAAAGGAGCTAAG
GTATAGGGACCTTATCACTGACAGGAGTAAAGACCGAGAGCCCTAGGGACTATAAGGTTGAAAT
GGCAAAAGCGAGGAAGGATGAGCAAAACTGAAGAGGAGAAAATATAGGAAGGAGGCAAGAGATG
GCTGGGGAAGTAAGCACGCAAGGAGAGAGGGTGATAAGGGGTAAGGATAGTTTTTAAAAGGAGA
TGACAAAGCATAGGAAGACAAAAGATGATAGGATGACCTGGGGAGTTGGCCATTTCTCAGGGTA
GGGCAGAGGAGATGGCTCTCTGGTGGAACAACCTACGTACTGCCTCAGAGGAAAGGGAACTAAG
TGAACAGCTGTGCTTTGAGATTGAAATAAACAGCATTATTTTGTTC

hide sequence

RefSeq Acc Id:

XM_039100810 ⟹ XP_038956738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	83,222,133 - 83,225,390 (-)	NCBI
mRatBN7.2	1	74,144,818 - 74,156,758 (-)	NCBI

RefSeq Acc Id:

XM_039100811 ⟹ XP_038956739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	83,222,133 - 83,241,629 (-)	NCBI
mRatBN7.2	1	74,144,818 - 74,164,317 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001419151	(Get FASTA)	NCBI Sequence Viewer
	NP_001419152	(Get FASTA)	NCBI Sequence Viewer
	NP_001419153	(Get FASTA)	NCBI Sequence Viewer
	NP_001419154	(Get FASTA)	NCBI Sequence Viewer
	NP_001419155	(Get FASTA)	NCBI Sequence Viewer
	NP_001419156	(Get FASTA)	NCBI Sequence Viewer
	XP_006228384	(Get FASTA)	NCBI Sequence Viewer
	XP_006228385	(Get FASTA)	NCBI Sequence Viewer
	XP_006228386	(Get FASTA)	NCBI Sequence Viewer
	XP_006228387	(Get FASTA)	NCBI Sequence Viewer
	XP_017445473	(Get FASTA)	NCBI Sequence Viewer
	XP_038956738	(Get FASTA)	NCBI Sequence Viewer
	XP_038956739	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83751	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018989
	ENSRNOP00000018989.7
	ENSRNOP00000105617.1

RefSeq Acc Id:	XP_006228384 ⟸ XM_006228322
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGQSKERRGAVPHSMLGSGPEPILPVDEPGPKMELTEPSPSPAVQKEEQELLDRTFFSWAEFSR FFDKWCQQRLVVFSVKSSTRVARSPWANTPPLYRLIHVLKYSYVLLVCKDVRMSNKSTAWPPQP SCPAFITVKLSPLRDRLVVTECQLTHSHPACPREFAYHFRPGHLLANSCLPVRITNQISKQFVA PADVHRLLTHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVESVFLLTSRTRALLRR FPRILLVDRLPGLQGALDLMAVLCVDSAGRARQAACCVARPGTPSLLRFMLVSLLQSAPDVKGR VRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADS KSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRGHRRRLLRR LNPSHSVAQCLRDLVAMQWADATGEAASEGVNGDRVLLESEPRNRAQMEKEKVRGTEASNWGRP DRESEKGRGLHLRDSQGVWLENQKVRGPEGTGAQLEKEHLREPEVRDWKGTQTENRRVKVLGPT DQRGNQVESEKAKSLEERPRREVQLQGERARALKPQDWKEPRFEIEKGIDVRKWREVYVEKPLE LVPENGDQRGPYLGADGQKGPDIAEERSGRFLVKRRRGLEDIVVVHLEDARATGIVNGNGGGPQ PVGFKNGGQQIEFGDPGGRLPGIGNGVPCTTPVQTVLKGSPEWAVNRVKSLAAEDAVQGRDEEG PREPKRLCRPCRDEGVDCEPLAKFRAACGPELADLVAEELAFARQHGTRGFHWTGAGFALKDGI SDFFLDGALTHCSCSIYAARHLPCRHLFAARLLTGAALFHVDLLRDCWGRSQEP hide sequence

RefSeq Acc Id:

XP_006228385 ⟸ XM_006228323

- Peptide Label:

isoform X2

- Sequence:

show sequence

MELTEPSPSPAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPL
YRLIHVLKYSYVLLVCKDVRMSNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACP
REFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVHRLLTHCKGPDHGVLDALQVLEGLFRTD
PEAKVKLVFVEDQAMVESVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRAR
QAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQ
GLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPR
HDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGVN
GDRVLLESEPRNRAQMEKEKVRGTEASNWGRPDRESEKGRGLHLRDSQGVWLENQKVRGPEGTG
AQLEKEHLREPEVRDWKGTQTENRRVKVLGPTDQRGNQVESEKAKSLEERPRREVQLQGERARA
LKPQDWKEPRFEIEKGIDVRKWREVYVEKPLELVPENGDQRGPYLGADGQKGPDIAEERSGRFL
VKRRRGLEDIVVVHLEDARATGIVNGNGGGPQPVGFKNGGQQIEFGDPGGRLPGIGNGVPCTTP
VQTVLKGSPEWAVNRVKSLAAEDAVQGRDEEGPREPKRLCRPCRDEGVDCEPLAKFRAACGPEL
ADLVAEELAFARQHGTRGFHWTGAGFALKDGISDFFLDGALTHCSCSIYAARHLPCRHLFAARL
LTGAALFHVDLLRDCWGRSQEP

hide sequence

RefSeq Acc Id:

XP_006228386 ⟸ XM_006228324

- Peptide Label:

isoform X2

- Sequence:

show sequence

MELTEPSPSPAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPL
YRLIHVLKYSYVLLVCKDVRMSNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACP
REFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVHRLLTHCKGPDHGVLDALQVLEGLFRTD
PEAKVKLVFVEDQAMVESVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRAR
QAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQ
GLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPR
HDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGVN
GDRVLLESEPRNRAQMEKEKVRGTEASNWGRPDRESEKGRGLHLRDSQGVWLENQKVRGPEGTG
AQLEKEHLREPEVRDWKGTQTENRRVKVLGPTDQRGNQVESEKAKSLEERPRREVQLQGERARA
LKPQDWKEPRFEIEKGIDVRKWREVYVEKPLELVPENGDQRGPYLGADGQKGPDIAEERSGRFL
VKRRRGLEDIVVVHLEDARATGIVNGNGGGPQPVGFKNGGQQIEFGDPGGRLPGIGNGVPCTTP
VQTVLKGSPEWAVNRVKSLAAEDAVQGRDEEGPREPKRLCRPCRDEGVDCEPLAKFRAACGPEL
ADLVAEELAFARQHGTRGFHWTGAGFALKDGISDFFLDGALTHCSCSIYAARHLPCRHLFAARL
LTGAALFHVDLLRDCWGRSQEP

hide sequence

RefSeq Acc Id:

XP_006228387 ⟸ XM_006228325

- Peptide Label:

isoform X2

- Sequence:

show sequence

MELTEPSPSPAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPL
YRLIHVLKYSYVLLVCKDVRMSNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACP
REFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVHRLLTHCKGPDHGVLDALQVLEGLFRTD
PEAKVKLVFVEDQAMVESVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRAR
QAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQ
GLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPR
HDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGVN
GDRVLLESEPRNRAQMEKEKVRGTEASNWGRPDRESEKGRGLHLRDSQGVWLENQKVRGPEGTG
AQLEKEHLREPEVRDWKGTQTENRRVKVLGPTDQRGNQVESEKAKSLEERPRREVQLQGERARA
LKPQDWKEPRFEIEKGIDVRKWREVYVEKPLELVPENGDQRGPYLGADGQKGPDIAEERSGRFL
VKRRRGLEDIVVVHLEDARATGIVNGNGGGPQPVGFKNGGQQIEFGDPGGRLPGIGNGVPCTTP
VQTVLKGSPEWAVNRVKSLAAEDAVQGRDEEGPREPKRLCRPCRDEGVDCEPLAKFRAACGPEL
ADLVAEELAFARQHGTRGFHWTGAGFALKDGISDFFLDGALTHCSCSIYAARHLPCRHLFAARL
LTGAALFHVDLLRDCWGRSQEP

hide sequence

RefSeq Acc Id:	XP_017445473 ⟸ XM_017589984
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZUL5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELTEPSPSPAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPL YRLIHVLKYSYVLLVCKDVRMSNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACP REFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVHRLLTHCKGPDHGVLDALQVLEGLFRTD PEAKVKLVFVEDQAMVESVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRAR QAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQ GLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPR HDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGVN GDRVLLESEPRNRAQMEKEKVRGTEASNWGRPDRESEKGRGLHLRDSQGVWLENQKVRGPEGTG AQLEKEHLREPEVRDWKGTQTENRRVKVLGPTDQRGNQVESEKAKSLEERPRREVQLQGERARA LKPQDWKEPRFEIEKGIDVRKWREVYVEKPLELVPENGDQRGPYLGADGQKGPDIAEERSGRFL VKRRRGLEDIVVVHLEDARATGIVNGNGGGPQPVGFKNGGQQIEFGDPGGRLPGIGNGVPCTTP VQTVLKGSPEWAVNRVKSLAAEDAVQGRDEEGPREPKRLCRPCRDEGVDCEPLAKFRAACGPEL ADLVAEELAFARQHGTRGFHWTGAGFALKDGISDFFLDGALTHCSCSIYAARHLPCRHLFAARL LTGAALFHVDLLRDCWGRSQEP hide sequence

Ensembl Acc Id:

ENSRNOP00000018989 ⟸ ENSRNOT00000018989

RefSeq Acc Id:	XP_038956739 ⟸ XM_039100811
- Peptide Label:	isoform X3
- UniProtKB:	A6KSL8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038956738 ⟸ XM_039100810
- Peptide Label:	isoform X3
- UniProtKB:	A6KSL8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000082252 ⟸ ENSRNOT00000099778

Ensembl Acc Id:

ENSRNOP00000105617 ⟸ ENSRNOT00000134020

Protein Domains

SWIM-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHE3-F1-model_v2	AlphaFold	D3ZHE3	1-854	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310257	AgrOrtholog
BioCyc Gene	G2FUF-60674	BioCyc
Ensembl Genes	ENSRNOG00000014186	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018989	ENTREZGENE
	ENSRNOT00000018989.8	UniProtKB/TrEMBL
	ENSRNOT00000134020.1	UniProtKB/TrEMBL
InterPro	DUF5575	UniProtKB/TrEMBL
	DUF5575_C	UniProtKB/TrEMBL
	DUF5575_N	UniProtKB/TrEMBL
	Znf_SWIM	UniProtKB/TrEMBL
	ZSWIM9_RNaseH-like	UniProtKB/TrEMBL
KEGG Report	rno:308381	UniProtKB/TrEMBL
NCBI Gene	308381	ENTREZGENE
PANTHER	PTHR47086	UniProtKB/TrEMBL
	ZINC FINGER SWIM-TYPE-CONTAINING 9	UniProtKB/TrEMBL
Pfam	DUF5575	UniProtKB/TrEMBL
	DUF5575_C	UniProtKB/TrEMBL
	DUF5575_N	UniProtKB/TrEMBL
PhenoGen	Zswim9	PhenoGen
PROSITE	ZF_SWIM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014186	RatGTEx
UniProt	A0A8I5ZUL5	ENTREZGENE
	A0ABK0L6Q7_RAT	UniProtKB/TrEMBL
	A6KSL8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZHE3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-31	Zswim9	zinc finger SWIM-type containing 9	RGD1310257	similar to RIKEN cDNA 6330408A02 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310257	similar to RIKEN cDNA 6330408A02 gene	RGD1310257_predicted	similar to RIKEN cDNA 6330408A02 gene (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310257_predicted	similar to RIKEN cDNA 6330408A02 gene (predicted)	LOC308381_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC308381_predicted	similar to RIKEN cDNA 6330408A02 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD