Cryzl1 (crystallin zeta like 1) - Rat Genome Database

Name: Cryzl1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cryzl1 (crystallin zeta like 1) Rattus norvegicus

Analyze

Symbol:

Cryzl1

Name:

crystallin zeta like 1

RGD ID:

1310219

Description:

Predicted to enable oxidoreductase activity. Orthologous to human CRYZL1 (crystallin zeta like 1); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 4,4'-sulfonyldiphenol; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

crystallin, zeta (quinone reductase)-like 1; LOC288256; quinone oxidoreductase-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CRYZL1 (crystallin zeta like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cryzl1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cryzl1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CRYZL1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CRYZL1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cryzl1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CRYZL1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CRYZL1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cryzl1 (crystallin zeta like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CRYZL1 (crystallin zeta like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cryzl1 (crystallin zeta like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cryzl1 (crystallin, zeta (quinone reductase)-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cryzl1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Related Pseudogenes:

Cryzl1-ps1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	44,419,099 - 44,464,366 (-)	NCBI		GRCr8
mRatBN7.2	11	30,933,140 - 30,977,936 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,933,144 - 30,977,867 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	39,627,065 - 39,671,779 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	32,298,498 - 32,343,209 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	31,463,616 - 31,505,449 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,847,741 - 31,893,042 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,847,745 - 31,892,531 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	35,456,474 - 35,498,147 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	31,662,123 - 31,720,570 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	31,701,183 - 31,759,442 (-)	NCBI
Celera	11	30,600,542 - 30,637,860 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis type 1 (ISO)

autosomal dominant intellectual developmental disorder 7 (ISO)

genetic disease (ISO)

Parkinson's disease 20 (ISO)

ZTTK Syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

calyculin a (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

ivermectin (ISO)

L-methionine (ISO)

lead diacetate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

N(4)-hydroxycytidine (ISO)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

quercitrin (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

Soman (EXP)

thioacetamide (EXP)

Tributyltin oxide (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

early endosome (IEA,ISO)

Molecular Function

identical protein binding (ISO)

oxidoreductase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:16780588

Genomics

Comparative Map Data

Cryzl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	44,419,099 - 44,464,366 (-)	NCBI		GRCr8
mRatBN7.2	11	30,933,140 - 30,977,936 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,933,144 - 30,977,867 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	39,627,065 - 39,671,779 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	32,298,498 - 32,343,209 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	31,463,616 - 31,505,449 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,847,741 - 31,893,042 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,847,745 - 31,892,531 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	35,456,474 - 35,498,147 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	31,662,123 - 31,720,570 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	31,701,183 - 31,759,442 (-)	NCBI
Celera	11	30,600,542 - 30,637,860 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

CRYZL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	33,589,341 - 33,641,741 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	33,589,341 - 33,643,926 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	34,961,647 - 35,014,047 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	33,883,517 - 33,936,030 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	33,883,519 - 33,935,936	NCBI
Celera	21	20,161,267 - 20,213,781 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	20,440,040 - 20,492,485 (-)	NCBI		HuRef
CHM1_1	21	34,524,284 - 34,576,624 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	31,971,130 - 32,023,555 (-)	NCBI		T2T-CHM13v2.0

Cryzl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	91,486,210 - 91,525,690 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	91,486,210 - 91,525,863 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	91,689,300 - 91,729,206 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	91,689,322 - 91,728,975 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	91,689,702 - 91,728,844 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	91,578,316 - 91,617,458 (-)	NCBI		MGSCv36	mm8
Celera	16	92,768,051 - 92,807,237 (-)	NCBI		Celera
Cytogenetic Map	16	C4	NCBI
cM Map	16	53.26	NCBI

Cryzl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	33,015,545 - 33,055,495 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	33,016,289 - 33,055,495 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRYZL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	29,706,766 - 29,759,214 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	24,565,034 - 24,617,403 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	19,956,289 - 20,008,741 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	33,328,674 - 33,381,033 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	33,328,674 - 33,381,033 (-)	Ensembl	panpan1.1		panPan2

CRYZL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	29,109,017 - 29,144,432 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	28,207,857 - 28,243,329 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	28,415,176 - 28,450,718 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	28,415,202 - 28,450,285 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	28,281,951 - 28,317,514 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	28,295,903 - 28,331,424 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	28,795,660 - 28,831,155 (-)	NCBI		UU_Cfam_GSD_1.0

Cryzl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	28,756,136 - 28,789,744 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	8,678,850 - 8,711,645 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	8,678,212 - 8,711,687 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRYZL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	197,203,842 - 197,248,421 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	197,204,473 - 197,248,848 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	207,015,352 - 207,077,229 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRYZL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	58,543,603 - 58,598,133 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	58,543,882 - 58,598,754 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	1,048,140 - 1,099,754 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cryzl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	21,808,688 - 21,846,880 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	21,807,703 - 21,847,012 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cryzl1
212 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	286
Count of miRNA genes:	189
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000033745
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	1	35331169	Rat
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
1641927	Alcrsp10	Alcohol response QTL 10			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	11	8436674	53436674	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	16472047	44285911	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	22959403	67959403	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	23280456	68280456	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	23280456	68280456	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	27672410	82846715	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	29528418	60324829	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	29528418	82566702	Rat

Markers in Region

D11Rat24

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,936,605 - 30,936,743 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,851,206 - 31,851,343	NCBI	Rnor6.0
Rnor_5.0	11	35,459,939 - 35,460,076	UniSTS	Rnor5.0
RGSC_v3.4	11	31,665,587 - 31,665,725	RGD	RGSC3.4
RGSC_v3.4	11	31,665,588 - 31,665,725	UniSTS	RGSC3.4
RGSC_v3.1	11	31,704,645 - 31,704,782	RGD
Celera	11	30,604,007 - 30,604,144	UniSTS
RH 3.4 Map	11	176.9	RGD
RH 3.4 Map	11	176.9	UniSTS
RH 2.0 Map	11	458.3	RGD
SHRSP x BN Map	11	12.7099	RGD
Cytogenetic Map	11	q11	UniSTS

Cryzl1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	13,198,660 - 13,198,910 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	9,809,950 - 9,810,199	NCBI	Rnor6.0
Rnor_5.0	4	9,811,083 - 9,811,332	UniSTS	Rnor5.0
RGSC_v3.4	4	8,645,715 - 8,645,964	UniSTS	RGSC3.4
Celera	4	8,790,406 - 8,790,655	UniSTS
Cytogenetic Map	11	q11	UniSTS

BE107455

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,941,160 - 30,941,331 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,855,761 - 31,855,931	NCBI	Rnor6.0
Rnor_5.0	11	35,464,494 - 35,464,664	UniSTS	Rnor5.0
RGSC_v3.4	11	31,670,143 - 31,670,313	UniSTS	RGSC3.4
Celera	11	30,608,562 - 30,608,732	UniSTS
RH 3.4 Map	11	176.3	UniSTS
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	22	8	8	3	8			74	26	36	10
Low		21	49	33	16	33	8	11		9	5	1	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC142009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000033745 ⟹ ENSRNOP00000031695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	30,933,144 - 30,977,836 (-)	Ensembl
Rnor_6.0 Ensembl	11	31,847,745 - 31,892,531 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095365 ⟹ ENSRNOP00000087034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	30,933,781 - 30,977,861 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112118 ⟹ ENSRNOP00000093304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	30,937,939 - 30,977,867 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119864 ⟹ ENSRNOP00000087103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	30,933,144 - 30,977,836 (-)	Ensembl

RefSeq Acc Id:

NM_001013044 ⟹ NP_001013062

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,099 - 44,463,793 (-)	NCBI
mRatBN7.2	11	30,933,140 - 30,977,836 (-)	NCBI
Rnor_6.0	11	31,847,741 - 31,892,531 (-)	NCBI
Rnor_5.0	11	35,456,474 - 35,498,147 (-)	NCBI
RGSC_v3.4	11	31,662,123 - 31,720,570 (-)	RGD
Celera	11	30,600,542 - 30,637,860 (-)	RGD

Sequence:

show sequence

GGCGCTGGCGGTTGAGGTTGCTCCAAGCCAGGTAACTATGAAAGGCTTGTATTTTCAACAGAGT
TCTACAAATGAAGAAGTAACATTTGTATTTCAAGAAAAGGAAAATGTCTCTGTCACAGAGGATA
ACTTTGTGAGAGTGCAAGTTAAAGCCTGTGCCCTGAGCCACATAAACACAAAGCTTCTGGCAGA
GATGAAGATGGAAAAGGAATTCTTCCCTGTTGGGAGAGAAGTCGCTGGGATTGTATTAGATGTT
GGCAAGAAGGTATCGTTCTTTCAGCCAGATGATGAAGTCGTCGGGATTTTGCCTTTGGATTCGG
AAGACCCCGGACTCTGCGAAGTTATCCGAGTACAGGAGCATTACCTGGTTCATAAGCCAGAAAA
GGTGCCATGGACGGAAGCCGCTGGAGTCATCCGGGATGGAGTCCGAGCCTACACAGCCCTCTAT
TACCTTTCTCAGCTCTCTCCCGGGAAGTCCGTGCTGATCATGGATGGGGCAAGTGCATTTGGCA
CAATAGCCATTCAGTTAGCACACCACAGAGGAGCCAAGGTGATCTCAACAGCACACAGCCTGGA
GGACAAGCAACATCTTGAAAGGCTTAGGCCTTCTCTAGCCCGAGTGATTGATGTGTCTAGTGGG
AAAGTCCATGTTGCTGAAAGGTGCTTGGAAGAAACAGGTGGCCTGGGAGTAGATATTGTCATAG
ATGCAGGAGTGAGATTATATAGTAAAGATGATGAACCAGCTGTAAAACAACAACTACCACATAA
GCATGACATCATCACACTTCTCAGTGTTGGAGGCCATTGGATAACGACAGAAGAAAACCTTCAG
TTGGATCCTCCAGATAGCCATTGCCTTTTCCTCAAGGGAGCAACAGTGGCTTTCCTTAATGATG
AAGTTTGGAATTTGTCAAATGCACAACAGGGAAAATATCTTTGCATCTTAAAAGACGTGATGGA
GAAGCTATCAGCTGGTGTGTTCAGACCTCTGCTTGATGAACCCATTCCACTGTATGAGGCCAAA
GTTTCCATGGAAGTTGTTCAGAAAAGTCAAGAAAGAAAAAAGCAAGTTGTTCAATTTTAATTTT
CTTTCCCAGACCTCAGTTGGATGCACCCACATCAGTGTATGAAGCCAGTTTTCTTTGGAAATTG
TTGAAAAAAATCAAGGAAGATAAAACAAGATTTTCTATATTTAAGCCTGTTTTCCTGCCACAAT
ATGATGTTTGGTTATTTGACACATTTGAAAAATACTTGCAAAATTAATGTGCAAACAATCCAAA
TAATTTTTAACACCTGAAGGGGACATTCCAAAAACATTTTGTTGTTGTATCTATACACTTTGCC
TCTGCTATAAAGTTCTTTCCATTAAGAAAACTGCTTTCAGCAAAAGCCACACTATTCTATCACT
ACATCTATCACAAGCTTTTGCTGTACGTTAATATGTAATTTGATTTCGTATCAACTTCATTCTC
AACACCCTCCTCAACAAACCTTTGATGCCATTATTTTAGCATTTGAGTGTATTTTCCGACTTCA
AAATATCTAATCCATTGGCATTTAAAATCTGTTTTTAAATATTCATCCACTCTGACTTTCTCTG
AGATCATACAGAAAGGTAGTGCCTGGTCCTGTGGTAGTAGTGGCATAGCATTTGCATAGAGGGC
TGGGGTGGTCGGGCACTGGGGACAGGGTGGAAGACTTGGCCTGAGGTTAGCCTGAAGCTGGCGG
ACATTCCTCCTCGTGGGTACTCTGTTGCGCTCTGGTCCATTACCATCTCTCTCGGAATGACATT
GCGGCTTCTCTCGGAGAAAAATAACTGCCCATCACCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006248045 ⟹ XP_006248107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,735 - 44,464,366 (-)	NCBI
mRatBN7.2	11	30,933,391 - 30,977,936 (-)	NCBI
Rnor_6.0	11	31,848,377 - 31,893,042 (-)	NCBI
Rnor_5.0	11	35,456,474 - 35,498,147 (-)	NCBI

Sequence:

show sequence

CACCCTTTTTCCTCCCAGTCCTTGTCTCGTCCCATGAAGGCATAACTAGAGGTTTCTGGTCTAT
GCGTACGGAGATTTTTGTTTCATGATTTGGCGCTTTGCTCTTTTCTATGCGCGACAGTAGCTAG
CATACATTTAACTAAATTGAAGGTTTTGCAGAAAGAACGTGGGAACGAGAGGCGACAGAGACAA
AGACTGAAGAAAGATGGTAGGGAGTACGGTTGGAATGAGGAAGGGTGTGGCCTTTTACTCTAAT
TTGCATAAAACGGAACCCATCTCGGCAACGCCCAACTTCTCCCAAGTATTGGTGGTCCCTGGGA
TGACTCGCCTCTCTACAGGGAGGAGCATGCTGGGAATTGTAGTTCCGGGTTCGGTTGCTATGGC
GCTCGTCACAGCCTCCCCCAGATCGGTCATCCTGCGGTAGTGACGGGCAGTCCGACCAATGGCA
GTACTGTTTGGACCTACGAAGGCGGGCTCTCTGCAGAAGGACTGGGAAGGTGGCGGCGGCGAAG
GCGCTGGCGGTTGAGGTTGCTCCAAGCCAGGTAACTATGAAAGGCTTGTATTTTCAACAGAGTT
CTACAAATGAAGAAGTAACATTTGTATTTCAAGAAAAGGAAAATGTCTCTGTCACAGAGGATAA
CTTTGTGAGAGTGCAAGTTAAAGCCTGTGCCCTGAGCCACATAAACACAAAGCTTCTGGCAGAG
ATGAAGATGGAAAAGGAATTCTTCCCTGTTGGGAGAGAAGTCGCTGGGATTGTATTAGATGTTC
ATAAGCCAGAAAAGGTGCCATGGACGGAAGCCGCTGGAGTCATCCGGGATGGAGTCCGAGCCTA
CACAGCCCTCTATTACCTTTCTCAGCTCTCTCCCGGGAAGTCCGTGCTGATCATGGATGGGGCA
AGTGCATTTGGCACAATAGCCATTCAGTTAGCACACCACAGAGGAGCCAAGGTGATCTCAACAG
CACACAGCCTGGAGGACAAGCAACATCTTGAAAGGCTTAGGCCTTCTCTAGCCCGAGTGATTGA
TGTGTCTAGTGGGAAAGTCCATGTTGCTGAAAGGTGCTTGGAAGAAACAGGTGGCCTGGGAGTA
GATATTGTCATAGATGCAGGAGTGAGATTATATAGTAAAGATGATGAACCAGCTGTAAAACAAC
AACTACCACATAAGCATGACATCATCACACTTCTCAGTGTTGGAGGCCATTGGATAACGACAGA
AGAAAACCTTCAGTTGGATCCTCCAGATAGCCATTGCCTTTTCCTCAAGGGAGCAACAGTGGCT
TTCCTTAATGATGAAGTTTGGAATTTGTCAAATGCACAACAGGGAAAATATCTTTGCATCTTAA
AAGACGTGATGGAGAAGCTATCAGCTGGTGTGTTCAGACCTCTGCTTGATGAACCCATTCCACT
GTATGAGGCCAAAGTTTCCATGGAAGTTGTTCAGAAAAGTCAAGAAAGAAAAAAGCAAGTTGTT
CAATTTTAATTTTCTTTCCCAGACCTCAGTTGGATGCACCCACATCAGTGTATGAAGCCAGTTT
TCTTTGGAAATTGTTGAAAAAAATCAAGGAAGATAAAACAAGATTTTCTATATTTAA

hide sequence

RefSeq Acc Id:

XM_063270418 ⟹ XP_063126488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,735 - 44,464,366 (-)	NCBI

RefSeq Acc Id:

XM_063270419 ⟹ XP_063126489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,350 - 44,464,366 (-)	NCBI

RefSeq Acc Id:

XM_063270420 ⟹ XP_063126490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,735 - 44,464,366 (-)	NCBI

RefSeq Acc Id:

XM_063270421 ⟹ XP_063126491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,735 - 44,464,366 (-)	NCBI

RefSeq Acc Id:

XM_063270422 ⟹ XP_063126492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,350 - 44,464,366 (-)	NCBI

RefSeq Acc Id:

XM_063270423 ⟹ XP_063126493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,423,596 - 44,464,366 (-)	NCBI

RefSeq Acc Id:

XR_005491010

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,419,740 - 44,464,366 (-)	NCBI
mRatBN7.2	11	30,933,391 - 30,977,936 (-)	NCBI

RefSeq Acc Id:

XR_010055943

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,423,449 - 44,464,366 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013062	(Get FASTA)	NCBI Sequence Viewer
	XP_006248107	(Get FASTA)	NCBI Sequence Viewer
	XP_063126488	(Get FASTA)	NCBI Sequence Viewer
	XP_063126489	(Get FASTA)	NCBI Sequence Viewer
	XP_063126490	(Get FASTA)	NCBI Sequence Viewer
	XP_063126491	(Get FASTA)	NCBI Sequence Viewer
	XP_063126492	(Get FASTA)	NCBI Sequence Viewer
	XP_063126493	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83853	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000031695
	ENSRNOP00000031695.4
	ENSRNOP00000087034
	ENSRNOP00000087034.1
	ENSRNOP00000087103.1
	ENSRNOP00000093304.1

RefSeq Acc Id:

NP_001013062 ⟸ NM_001013044

- UniProtKB:

Q5XI39 (UniProtKB/TrEMBL), A0A8I6A2M2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKGLYFQQSSTNEEVTFVFQEKENVSVTEDNFVRVQVKACALSHINTKLLAEMKMEKEFFPVGR
EVAGIVLDVGKKVSFFQPDDEVVGILPLDSEDPGLCEVIRVQEHYLVHKPEKVPWTEAAGVIRD
GVRAYTALYYLSQLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTAHSLEDKQHLERLRPSL
ARVIDVSSGKVHVAERCLEETGGLGVDIVIDAGVRLYSKDDEPAVKQQLPHKHDIITLLSVGGH
WITTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNAQQGKYLCILKDVMEKLSAGVFRPLLD
EPIPLYEAKVSMEVVQKSQERKKQVVQF

hide sequence

RefSeq Acc Id:	XP_006248107 ⟸ XM_006248045
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A2M2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKGLYFQQSSTNEEVTFVFQEKENVSVTEDNFVRVQVKACALSHINTKLLAEMKMEKEFFPVGR EVAGIVLDVHKPEKVPWTEAAGVIRDGVRAYTALYYLSQLSPGKSVLIMDGASAFGTIAIQLAH HRGAKVISTAHSLEDKQHLERLRPSLARVIDVSSGKVHVAERCLEETGGLGVDIVIDAGVRLYS KDDEPAVKQQLPHKHDIITLLSVGGHWITTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNA QQGKYLCILKDVMEKLSAGVFRPLLDEPIPLYEAKVSMEVVQKSQERKKQVVQF hide sequence

RefSeq Acc Id:

ENSRNOP00000031695 ⟸ ENSRNOT00000033745

RefSeq Acc Id:

ENSRNOP00000093304 ⟸ ENSRNOT00000112118

RefSeq Acc Id:

ENSRNOP00000087034 ⟸ ENSRNOT00000095365

RefSeq Acc Id:

ENSRNOP00000087103 ⟸ ENSRNOT00000119864

RefSeq Acc Id:	XP_063126489 ⟸ XM_063270419
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063126492 ⟸ XM_063270422
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063126491 ⟸ XM_063270421
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063126490 ⟸ XM_063270420
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A6J0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126488 ⟸ XM_063270418
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063126493 ⟸ XM_063270423
- Peptide Label:	isoform X7

Protein Domains

Enoyl reductase (ER)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XI39-F1-model_v2	AlphaFold	Q5XI39	1-348	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698062

Promoter ID:

EPDNEW_R8587

Type:

multiple initiation site

Name:

Cryzl1_1

Description:

crystallin zeta like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	31,892,560 - 31,892,620	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310219	AgrOrtholog
BioCyc Gene	G2FUF-21875	BioCyc
Ensembl Genes	ENSRNOG00000028014	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033745	ENTREZGENE
	ENSRNOT00000033745.5	UniProtKB/TrEMBL
	ENSRNOT00000095365.1	UniProtKB/TrEMBL
	ENSRNOT00000112118.1	UniProtKB/TrEMBL
	ENSRNOT00000119864.1	UniProtKB/TrEMBL
Gene3D-CATH	Medium-chain alcohol dehydrogenases, catalytic domain	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7124012	IMAGE-MGC_LOAD
InterPro	ADH-like_C	UniProtKB/TrEMBL
	ADH_GroES-like	UniProtKB/TrEMBL
	CRYZL1	UniProtKB/TrEMBL
	GroES-like	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
	PKS_ER	UniProtKB/TrEMBL
KEGG Report	rno:288256	UniProtKB/TrEMBL
MGC_CLONE	MGC:95055	IMAGE-MGC_LOAD
NCBI Gene	288256	ENTREZGENE
PANTHER	PTHR44461	UniProtKB/TrEMBL
	QUINONE OXIDOREDUCTASE-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	ADH_N	UniProtKB/TrEMBL
	ADH_zinc_N	UniProtKB/TrEMBL
PhenoGen	Cryzl1	PhenoGen
RatGTEx	ENSRNOG00000028014	RatGTEx
SMART	PKS_ER	UniProtKB/TrEMBL
Superfamily-SCOP	GroES_like	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
UniProt	A0A8I6A2M2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A6J0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIQ7_RAT	UniProtKB/TrEMBL
	Q5XI39	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Cryzl1	crystallin zeta like 1	Cryzl1	crystallin, zeta (quinone reductase)-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Cryzl1	crystallin, zeta (quinone reductase)-like 1	Cryzl1_predicted	crystallin, zeta (quinone reductase)-like 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Cryzl1_predicted	crystallin, zeta (quinone reductase)-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar