D11Rat24 Marker Search Result - Rat Genome Database

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Marker: D11Rat24

Symbol: D11Rat24
Previously known as: R0007-C01; oxsts6039; R007-C01; 
RGD ID: 35323
Expected Size: 138 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,936,605 - 30,936,743 (+)MAPPERmRatBN7.2
Rnor_6.01131,851,206 - 31,851,343NCBIRnor6.0
Rnor_5.01135,459,939 - 35,460,076UniSTSRnor5.0
RGSC_v3.41131,665,587 - 31,665,725RGDRGSC3.4
RGSC_v3.41131,665,588 - 31,665,725UniSTSRGSC3.4
RGSC_v3.11131,704,645 - 31,704,782RGD
Celera1130,604,007 - 30,604,144UniSTS
RH 3.4 Map11176.9RGD
RH 3.4 Map11176.9UniSTS
RH 2.0 Map11458.3RGD
SHRSP x BN Map1112.7099RGD
Cytogenetic Map11q11UniSTS
Is Marker For: Strains:   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Alcrsp10  
Genes:   Cryzl1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ATCAAACAGCAAGGACAGGG
Reverse Primer TGATAGTAGTGGGCCGAAGG
 
Template 
CAAGCTTGCATGCTGCAGGTCGACTCTAGAGGATCCCCACAAATTAAACACTGTGGAAAGCACA
GACACTCGCTACAAGCTTATACAGCCCTTAGTTACAGTTTCTTCCCTAAGCCATGATCAAACAG
CAAGGACAGGGCAGTTGCAGGGCCAATGTGGATTCCAGGTGTAGATGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAGGTTCTCTCTGTGCCTTCGGCCCACTACTATC
AGGCATCTTTGTCTGGACTGATATATTAGTATAGTACCNAAATCCCACAAGGAGATAGTTGGTC
TCTCCTAAATTCACAGATGAGACCAACAATTTTGCCACAATATCTTGGCAAAGAAGGACCCACC
AGGAGACTACAGGGCACAGGAACTGCAGAGCAACTGTGGACAGGAACTTTTGGATCCCCATCAG
CATCCAGGAGATAACCGTGTGGCACAGCTCTCCAT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1310219Cryzl1crystallin zeta like 1113093314030977936Rat

Nucleotide Sequences
GenBank Nucleotide AC120736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303252 UniSTS
  288256 UniSTS
UniSTS 118239 UniSTS