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Gene: Ttc13 (tetratricopeptide repeat domain 13) Rattus norvegicus

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Symbol:

Ttc13

Name:

tetratricopeptide repeat domain 13

RGD ID:

1310186

Description:

Orthologous to human TTC13 (tetratricopeptide repeat domain 13); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC292095; tetratricopeptide repeat protein 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,534,989 - 69,589,590 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	69,534,989 - 69,589,563 (-)	Ensembl				GRCr8
mRatBN7.2	19	52,637,599 - 52,692,196 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,637,431 - 52,692,198 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	59,422,195 - 59,476,849 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,274,086 - 60,327,599 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,348,659 - 62,403,299 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,429,980 - 57,484,583 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,429,980 - 57,484,742 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	54,848,488 - 54,904,567 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	52,006,329 - 52,060,544 (-)	NCBI		Celera
RGSC_v3.1	19	54,853,541 - 54,909,433 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methoxyethanol (EXP)

2-methylcholine (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buspirone (EXP)

CGP 52608 (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dimethyl sulfoxide (ISO)

disulfiram (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

fenthion (ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

lead diacetate (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (EXP,ISO)

methapyrilene (EXP)

N-ethyl-N-nitrosourea (ISO)

nefazodone (EXP)

nickel sulfate (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thiram (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Ttc13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,534,989 - 69,589,590 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	69,534,989 - 69,589,563 (-)	Ensembl				GRCr8
mRatBN7.2	19	52,637,599 - 52,692,196 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,637,431 - 52,692,198 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	59,422,195 - 59,476,849 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,274,086 - 60,327,599 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,348,659 - 62,403,299 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,429,980 - 57,484,583 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,429,980 - 57,484,742 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	54,848,488 - 54,904,567 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	52,006,329 - 52,060,544 (-)	NCBI		Celera
RGSC_v3.1	19	54,853,541 - 54,909,433 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

TTC13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	230,906,243 - 230,978,861 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	230,902,945 - 230,978,893 (-)	Ensembl			hg38	GRCh38
GRCh37	1	231,041,989 - 231,114,607 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	229,108,613 - 229,181,207 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	227,348,724 - 227,421,319	NCBI
Celera	1	204,307,932 - 204,380,251 (-)	NCBI		Celera
Cytogenetic Map	1	q42.2	NCBI
HuRef	1	201,526,601 - 201,599,336 (-)	NCBI		HuRef
CHM1_1	1	232,314,940 - 232,387,908 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	230,286,691 - 230,359,339 (-)	NCBI		T2T-CHM13v2.0

Ttc13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,398,066 - 125,448,748 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	125,398,071 - 125,448,722 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	124,671,327 - 124,722,011 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,671,332 - 124,721,983 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	127,195,227 - 127,245,875 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	127,557,417 - 127,608,052 (-)	NCBI		MGSCv36	mm8
Celera	8	128,969,473 - 129,027,118 (-)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	72.81	NCBI

Ttc13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	7,683,443 - 7,743,718 (+)	Ensembl
ChiLan1.0	NW_004955492	7,683,353 - 7,743,066 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	18,228,170 - 18,301,034 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	18,420,701 - 18,493,576 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	206,454,877 - 206,527,628 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	211,481,786 - 211,536,834 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	211,481,786 - 211,536,837 (-)	Ensembl			panPan2	panpan1.1

TTC13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	8,424,835 - 8,503,133 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	8,424,882 - 8,502,600 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	8,416,667 - 8,496,911 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	8,450,010 - 8,529,676 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	8,450,033 - 8,527,678 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	8,453,507 - 8,533,827 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	8,575,523 - 8,655,844 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	8,805,639 - 8,885,928 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ttc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	43,397,582 - 43,455,288 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	19,577,065 - 19,619,800 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	19,574,455 - 19,620,505 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	59,409,123 - 59,509,549 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	59,409,128 - 59,491,966 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	64,073,719 - 64,156,593 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	68,147,950 - 68,251,017 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	70,081,179 - 70,157,084 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	18,652,605 - 18,713,965 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624775	18,652,611 - 18,713,577 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ttc13
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	44,189,554 - 44,245,849 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	685
Count of miRNA genes:	298
Interacting mature miRNAs:	372
Transcripts:	ENSRNOT00000025548
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat

Markers in Region

RH141350

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	52,637,612 - 52,637,813 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	57,430,162 - 57,430,362	NCBI	Rnor6.0
Rnor_5.0	19	68,135,232 - 68,135,432	UniSTS	Rnor5.0
RGSC_v3.4	19	54,848,670 - 54,848,870	UniSTS	RGSC3.4
Celera	19	52,006,511 - 52,006,711	UniSTS
RH 3.4 Map	19	736.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

BE107052

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	52,640,082 - 52,640,240 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	57,432,632 - 57,432,789	NCBI	Rnor6.0
Rnor_5.0	19	68,137,702 - 68,137,859	UniSTS	Rnor5.0
RGSC_v3.4	19	54,851,140 - 54,851,297	UniSTS	RGSC3.4
Celera	19	52,008,981 - 52,009,138	UniSTS
RH 3.4 Map	19	723.4	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001136162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY724473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025548 ⟹ ENSRNOP00000025548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,637,431 - 52,692,183 (-)	Ensembl
Rnor_6.0 Ensembl	19	57,429,980 - 57,484,566 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079783 ⟹ ENSRNOP00000070958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,637,604 - 52,692,198 (-)	Ensembl
Rnor_6.0 Ensembl	19	57,430,131 - 57,484,742 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096284 ⟹ ENSRNOP00000089533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,637,604 - 52,692,198 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097832 ⟹ ENSRNOP00000079791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	69,534,989 - 69,589,563 (-)	Ensembl
mRatBN7.2 Ensembl	19	52,637,604 - 52,692,198 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113253 ⟹ ENSRNOP00000090844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	69,534,989 - 69,589,563 (-)	Ensembl
mRatBN7.2 Ensembl	19	52,637,431 - 52,692,183 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118217 ⟹ ENSRNOP00000090923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,673,490 - 52,692,198 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118767 ⟹ ENSRNOP00000077631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	69,534,989 - 69,589,563 (-)	Ensembl
mRatBN7.2 Ensembl	19	52,637,604 - 52,692,198 (-)	Ensembl

RefSeq Acc Id:

NM_001136162 ⟹ NP_001129634

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,563 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,692,172 (-)	NCBI
Rnor_6.0	19	57,429,980 - 57,484,566 (-)	NCBI
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI
RGSC_v3.4	19	54,848,488 - 54,904,567 (-)	RGD
Celera	19	52,006,329 - 52,060,544 (-)	RGD

Sequence:

show sequence

GCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGGCTGCTCCGGCAGCTTGG
GTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCCTGCGCGCGGGCCACCGA
GCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGCAGCAGCAGGAGGCCCCG
GCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCCGGAGTGCGAGTCGTCAT
TTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCCTGTGACTCGCTGCTCTC
TCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGCAGAAGAGATTCCCGTTT
GCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGTGCTGGTCGGCAGCGGTC
TCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGATTCTGTCCCCTCTGGGACGAAT
TAATGAAGCCGTAAACGATCTCACTAAAGCTATTCAACTTCAGCCCTCAGCACGGCTGTACCGA
CACCGGGGGACCTTGTACTTCATATCCGAGGACTACGCGACAGCCCACGAGGACTTTCAGCAGT
CCTTGGAGCTGAACAGAAACCAGCCCACAGCCATGCTGTACAAAGGCCTAACTTTCTTTCACAG
AGGACTTCTGAAGGAAGCCATCGAGGCCTTCAAAGAAGCTCTGAAACAGAAAGTCGACTTTATC
GATGCCTATAAAAGTCTGGGACAGGCCTACAGAGAACTGGGCAATTTTGAAGCCGCTACCGAGA
GCTTCCAGAAGGCCCTGCTGCTCAACCAGAACCATGTGCAGACCCTGCAGCTCCGGGGCATGAT
GCTCTACCACCATGGCAGCCTGCAGGAGGCCCTGAAGAACTTCAAGCGCTGCCTGCAACTGGAA
CCGTACAACGAAGTGTGCCAGTACATGAAGGGGCTCAGCCATGTGGCAACGGGGCAGTTCTATG
AAGGAATTAAAGCACAGACAAAAGTTATGCTGAACGACCCCCTTCCTGGCCAGAAGGCCAGCCC
AGAGTACCTGCGGGTGAAGTATCTCCGAGAGTATTCTCGGTATCTGCATGCACACCTCGATACT
CCCCTGACGGAATATAACATTGACACGGACCTACCGGGCAGCTTCAAGGACCACTGGGCCAAGA
ACCTACCTTTTCTCATAGACGGCTATGAAGAGCAGCCTGGCCTGCAGCCTCACATCAGGGATGT
GTTACATCAGAATTTCGAGGGCTACAAGCCTGAAGTCCAGGAGCTGATCTGTGTAGCTGACCGC
CTGGGTTCACTGATGCAGTACGAAACACCTGGGTTCCTGCCCAACAAGAGGATACACAGAGCCA
TGGGTCTGGCAGCGCTAGAAGTCATGCAGGCTGTACAGCGAACCTGGACCAACTCAAAAGTCCG
CATGAACGGGAAGACGAGGCTGATGCAGTGGAGGGACATGTTTGACATTGCTGTGAAGTGGAGA
AGGATCGCGGATCCAGACCAGCCGGTGCTGTGGCTGGATCAGATGCCGGCACCCAGTCTCAGCA
GAGGTTTCAACAACCACATCAACCTAATCAGGGGTCAAGTGATTAATATGAGATACCTGGAATA
TTTTGAGAAAATACTTCATTTTATTAAAGACAGGATTCTTGTTTATCATGGAGCAAATAATCCA
AAGGGCTTACTGGAAGTCAGAGAAGCTCTGGAAAAGGTACATAAAGTGGAAGACCTTCTTCCAA
TTATGAAGCAGTTCAATACCAAAACAAAGGACGGGTTCACCGTGAACACCAAAGTACCCAGCCT
CAAAGATCAAGGGAAGGAGTATGACGGCTTCACCATCACCATCACAGGAGACAAGGTCGGCAAT
ATCCTATTTTCTGTGGAAACTCAAACCACAGAAGAGAGGACACAGCTGTATCACGCTGAAATAG
ATGCACTTTATAAGGACCTGACAGCAAAGGGCAAAGTACTGACCCTCTCGGCAGAATTCGGGGA
GGCTGATGCTGTCTGCAACTTAATCTTATCCTTAGTTTATTACTTTTATAATTTAATGCCCCTG
TCTCGAGGATCTAGTGTCATTGCATATTCAGTCATTGTGGGAGCGCTGATGGCCAGTGGCAAAG
AAGTGGCTGGGAAGATCCCCAAAGGGAAGTTAGTCGACTTTGAAGCCATGACAGCCCCTGGCTC
AGAGGCCTTCAGCAAAATAGCGAAAAGCTGGATGAACTTGAAAAGTATCTCCCCTTCCTACAAG
ACCCTGCCATCAGTATCAGAGACGTTCCCGACTCTGAGGTCCATGATCGAGGTGCTCAACACGG
ATTCCACCCCACGGTGTCTAAAGAAACTCTAGCCGGATCAGAGGATTTATACACGTGAAGGGCC
AGGCCTCTCGCTTCTTAAGTTATTTTTTAAGACATGAAATTATTACAGAATTAGGTCCTTTGTT
ACTTTTGATACCAATTTTTGATAGGAATTGAATACTTGAAAACATTTTCTTTACTTTTTCTGAA
CCGTAACAGAAATCATGAAAACGGGTTTTTGGGGAAAAACTACTTGAGCAGGAAGGGAAGTATG
TGTATTAGCGGCAGCCGCTCGGTTCCCATGTGTTGAGGTATACTGTTCCTTCCTCACAGCAAAA
ACATGTTTACTTCAGAAACCAAAAATTAATAATTAAGATGAAGAAAGCCAATACCAGCAGGGCT
TGTCTTCACTGTCAGAGGTGTGGGCGTCCTCAGACCTCCTTCCTGTGCACCTCTGTGGGGTGCC
TCGCTACTGCCATGCCCTCACACGTGGGCCCTCCAGCCCCCCAGAACTGTGGAAGGGCCCCAGC
ATGGCTTGTGGGAAGAAGCACTGGCCAGATGACGACAGTATTTGCCAATCACTGAACCATGTTG
TTCTTTTCTTTGTTGGAAAAAGCAAGCAGAGGTGATTCCCGAAAGTCGCCGAGTTGGGCACTGG
ATTATGTTGTGTTCACGTGTGAGCTGGTTTTGCTTTCGGGTGTCAGAGCGTTTAGAATGTTTCT
TGTTTCCTCAGTCAGGGCGGAAGATGGAGGAACAAGGTCCAGTAAAGGCTGCAGTTTCAAACCG
TGGTCAGTTCTGTAGTTTTGCTCTCGATGTTGTGGCCTTTCGCCTTTCTGTTTTATTTATGTTC
CTGTTCGGATGCTGTAGGTGGAAGCCAGGCTTCTTGCATCCTGGGAAACACTCAGTCACCCAGC
CTCTCAAACTGGCTTCTGCTCTGAACTTCACGCGGTGAGAGC

hide sequence

RefSeq Acc Id:

NM_001415074 ⟹ NP_001402003

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,563 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,692,172 (-)	NCBI

RefSeq Acc Id:

NM_001415075 ⟹ NP_001402004

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,563 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,692,172 (-)	NCBI

RefSeq Acc Id:

XM_006255803 ⟹ XP_006255865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,590 (-)	NCBI
mRatBN7.2	19	52,637,607 - 52,692,162 (-)	NCBI
Rnor_6.0	19	57,430,148 - 57,484,583 (-)	NCBI
Rnor_5.0	19	68,135,050 - 68,189,367 (-)	NCBI

Sequence:

show sequence

GCGGGCAGAGCAGGGCCGCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGG
CTGCTCCGGCAGCTTGGGTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCC
TGCGCGCGGGCCACCGAGCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGC
AGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCC
GGAGTGCGAGTCGTCATTTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCC
TGTGACTCGCTGCTCTCTCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGC
AGAAGAGATTCCCGTTTGCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGT
GCTGGTCGGCAGCGGTCTCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGGAGGAG
CCTGATCTGGTTAGTGCAATTTATGGCCGAGGGATAGCCTATGGAAAGAAGGGACTACATGACA
TTAAGAACGCTGAGCTTGCTTTGTTTGAACTGAGCCGAGTAATTGCCTTGGAACCTGACCGTCC
AGAGGTATTTGAGCAGCGAGCTGAAATTCTGTCCCCTCTGGGACGAATTAATGAAGCCGTAAAC
GATCTCACTAAAGCTATTCAACTTCAGCCCTCAGCACGGCTGTACCGACACCGGGGGACCTTGT
ACTTCATATCCGAGGACTACGCGACAGCCCACGAGGACTTTCAGCAGTCCTTGGAGCTGAACAG
AAACCAGCCCACAGCCATGCTGTACAAAGGCCTAACTTTCTTTCACAGAGGACTTCTGAAGGAA
GCCATCGAGGCCTTCAAAGAAGCTCTGAAACAGAAAGTCGACTTTATCGATGCCTATAAAAGTC
TGGGACAGGCCTACAGAGAACTGGGCAATTTTGAAGCCGCTACCGAGAGCTTCCAGAAGGCCCT
GCTGCTCAACCAGAACCATGTGCAGACCCTGCAGCTCCGGGGCATGATGCTCTACCACCATGGC
AGCCTGCAGGAGGCCCTGAAGAACTTCAAGCGCTGCCTGCAACTGGAACCGTACAACGAAGTGT
GCCAGTACATGAAGGGGCTCAGCCATGTGGCAACGGGGCAGTTCTATGAAGGAATTAAAGCACA
GACAAAAGTTATGCTGAACGACCCCCTTCCTGGCCAGAAGGCCAGCCCAGAGTACCTGCGGGTG
AAGTATCTCCGAGAGTATTCTCGGTATCTGCATGCACACCTCGATACTCCCCTGACGGAATATA
ACATTGACACGGACCTACCGGGCAGCTTCAAGGACCACTGGGCCAAGAACCTACCTTTTCTCAT
AGACGGCTATGAAGAGCAGCCTGGCCTGCAGCCTCACATCAGGGATGTGTTACATCAGAATTTC
GAGGGCTACAAGCCTGAAGTCCAGGAGCTGATCTGTGTAGCTGACCGCCTGGGTTCACTGATGC
AGTACGAAACACCTGGGTTCCTGCCCAACAAGAGGATACACAGAGCCATGGGTCTGGCAGCGCT
AGAAGTCATGCAGGCTGTACAGCGAACCTGGACCAACTCAAAAGTCCGCATGAACGGGAAGACG
AGGCTGATGCAGTGGAGGGACATGTTTGACATTGCTGTGAAGTGGAGAAGGATCGCGGATCCAG
ACCAGCCGGTGCTGTGGCTGGATCAGATGCCGGCACCCAGTCTCAGCAGAGGTTTCAACAACCA
CATCAACCTAATCAGGGGTCAAGTGATTAATATGAGATACCTGGAATATTTTGAGAAAATACTT
CATTTTATTAAAGACAGGATTCTTGTTTATCATGGAGCAAATAATCCAAAGGGCTTACTGGAAG
TCAGAGAAGCTCTGGAAAAGGTACATAAAGTGGAAGACCTTCTTCCAATTATGAAGTTCAATAC
CAAAACAAAGGACGGGTTCACCGTGAACACCAAAGTACCCAGCCTCAAAGATCAAGGGAAGGAG
TATGACGGCTTCACCATCACCATCACAGGAGACAAGGTCGGCAATATCCTATTTTCTGTGGAAA
CTCAAACCACAGAAGAGAGGACACAGCTGTATCACGCTGAAATAGATGCACTTTATAAGGACCT
GACAGCAAAGGGCAAAGTACTGACCCTCTCGGCAGAATTCGGGGAGGCTGATGCTGTCTGCAAC
TTAATCTTATCCTTAGTTTATTACTTTTATAATTTAATGCCCCTGTCTCGAGGATCTAGTGTCA
TTGCATATTCAGTCATTGTGGGAGCGCTGATGGCCAGTGGCAAAGAAGTGGCTGGGAAGATCCC
CAAAGGGAAGTTAGTCGACTTTGAAGCCATGACAGCCCCTGGCTCAGAGGCCTTCAGCAAAATA
GCGAAAAGCTGGATGAACTTGAAAAGTATCTCCCCTTCCTACAAGACCCTGCCATCAGTATCAG
AGACGTTCCCGACTCTGAGGTCCATGATCGAGGTGCTCAACACGGATTCCACCCCACGGTGTCT
AAAGAAACTCTAGCCGGATCAGAGGATTTATACACGTGAAGGGCCAGGCCTCTCGCTTCTTAAG
TTATTTTTTAAGACATGAAATTATTACAGAATTAGGTCCTTTGTTACTTTTGATACCAATTTTT
GATAGGAATTGAATACTTGAAAACATTTTCTTTACTTTTTCTGAACCGTAACAGAAATCATGAA
AACGGGTTTTTGGGGAAAAACTACTTGAGCAGGAAGGGAAGTATGTGTATTAGCGGCAGCCGCT
CGGTTCCCATGTGTTGAGGTATACTGTTCCTTCCTCACAGCAAAAACATGTTTACTTCAGAAAC
CAAAAATTAATAATTAAGATGAAGAAAGCCAATACCAGCAGGGCTTGTCTTCACTGTCAGAGGT
GTGGGCGTCCTCAGACCTCCTTCCTGTGCACCTCTGTGGGGTGCCTCGCTACTGCCATGCCCTC
ACACGTGGGCCCTCCAGCCCCCCAGAACTGTGGAAGGGCCCCAGCATGGCTTGTGGGAAGAAGC
ACTGGCCAGATGACGACAGTATTTGCCAATCACTGAACCATGTTGTTCTTTTCTTTGTTGGAAA
AAGCAAGCAGAGGTGATTCCCGAAAGTCGCCGAGTTGGGCACTGGATTATGTTGTGTTCACGTG
TGAGCTGGTTTTGCTTTCGGGTGTCAGAGCGTTTAGAATGTTTCTTGTTTCCTCAGTCAGGGCG
GAAGATGGAGGAACAAGGTCCAGTAAAGGCTGCAGTTTCAAACCGTG

hide sequence

RefSeq Acc Id:

XM_017601247 ⟹ XP_017456736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,589 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,692,196 (-)	NCBI
Rnor_6.0	19	57,430,148 - 57,484,583 (-)	NCBI

Sequence:

show sequence

GCGGGCAGAGCAGGGCCGCGCCTGCGCCGTGCGGGAAGATGGCACCTGCCGGTCGCGGCTGCGG
CTGCTCCGGCAGCTTGGGTGCCACGGTGGTGCGGCTGCTGCTCCTGCTGCTGGGGGCGCTGGCC
TGCGCGCGGGCCACCGAGCACTACTCTCCGCTGTCCTTGCTGAAGCAGGAACTTCAGCACCGGC
AGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCCCGCAGTCGGGGGACTGGGCGGACCAGTACCC
GGAGTGCGAGTCGTCATTTTTGAACTTCCATGAATCTGACTGCGAACTGAGAGGCTCGGCCCCC
TGTGACTCGCTGCTCTCTCTCAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAGC
AGAAGAGATTCCCGTTTGCTACTGACAATGACAGCACCAATGAAGAATTAGCTATTGCTTACGT
GCTGGTCGGCAGCGGTCTCTACGATGAAGCTATAAGACACTTTTCAACCATGCTCCAGGAGGAG
CCTGATCTGGTTAGTGCAATTTATGGCCGAGGGATAGCCTATGGAAAGAAGGGACTACATATTC
TGTCCCCTCTGGGACGAATTAATGAAGCCGTAAACGATCTCACTAAAGCTATTCAACTTCAGCC
CTCAGCACGGCTGTACCGACACCGGGGGACCTTGTACTTCATATCCGAGGACTACGCGACAGCC
CACGAGGACTTTCAGCAGTCCTTGGAGCTGAACAGAAACCAGCCCACAGCCATGCTGTACAAAG
GCCTAACTTTCTTTCACAGAGGACTTCTGAAGGAAGCCATCGAGGCCTTCAAAGAAGCTCTGAA
ACAGAAAGTCGACTTTATCGATGCCTATAAAAGTCTGGGACAGGCCTACAGAGAACTGGGCAAT
TTTGAAGCCGCTACCGAGAGCTTCCAGAAGGCCCTGCTGCTCAACCAGAACCATGTGCAGACCC
TGCAGCTCCGGGGCATGATGCTCTACCACCATGGCAGCCTGCAGGAGGCCCTGAAGAACTTCAA
GCGCTGCCTGCAACTGGAACCGTACAACGAAGTGTGCCAGTACATGAAGGGGCTCAGCCATGTG
GCAACGGGGCAGTTCTATGAAGGAATTAAAGCACAGACAAAAGTTATGCTGAACGACCCCCTTC
CTGGCCAGAAGGCCAGCCCAGAGTACCTGCGGGTGAAGTATCTCCGAGAGTATTCTCGGTATCT
GCATGCACACCTCGATACTCCCCTGACGGAATATAACATTGACACGGACCTACCGGGCAGCTTC
AAGGACCACTGGGCCAAGAACCTACCTTTTCTCATAGACGGCTATGAAGAGCAGCCTGGCCTGC
AGCCTCACATCAGGGATGTGTTACATCAGAATTTCGAGGGCTACAAGCCTGAAGTCCAGGAGCT
GATCTGTGTAGCTGACCGCCTGGGTTCACTGATGCAGTACGAAACACCTGGGTTCCTGCCCAAC
AAGAGGATACACAGAGCCATGGGTCTGGCAGCGCTAGAAGTCATGCAGGCTGTACAGCGAACCT
GGACCAACTCAAAAGTCCGCATGAACGGGAAGACGAGGCTGATGCAGTGGAGGGACATGTTTGA
CATTGCTGTGAAGTGGAGAAGGATCGCGGATCCAGACCAGCCGGTGCTGTGGCTGGATCAGATG
CCGGCACCCAGTCTCAGCAGAGGTTTCAACAACCACATCAACCTAATCAGGGGTCAAGTGATTA
ATATGAGATACCTGGAATATTTTGAGAAAATACTTCATTTTATTAAAGACAGGATTCTTGTTTA
TCATGGAGCAAATAATCCAAAGGGCTTACTGGAAGTCAGAGAAGCTCTGGAAAAGGTACATAAA
GTGGAAGACCTTCTTCCAATTATGAAGCAGTTCAATACCAAAACAAAGGACGGGTTCACCGTGA
ACACCAAAGTACCCAGCCTCAAAGATCAAGGGAAGGAGTATGACGGCTTCACCATCACCATCAC
AGGAGACAAGGTCGGCAATATCCTATTTTCTGTGGAAACTCAAACCACAGAAGAGAGGACACAG
CTGTATCACGCTGAAATAGATGCACTTTATAAGGACCTGACAGCAAAGGGCAAAGTACTGACCC
TCTCGGCAGAATTCGGGGAGGCTGATGCTGTCTGCAACTTAATCTTATCCTTAGTTTATTACTT
TTATAATTTAATGCCCCTGTCTCGAGGATCTAGTGTCATTGCATATTCAGTCATTGTGGGAGCG
CTGATGGCCAGTGGCAAAGAAGTGGCTGGGAAGATCCCCAAAGGGAAGTTAGTCGACTTTGAAG
CCATGACAGCCCCTGGCTCAGAGGCCTTCAGCAAAATAGCGAAAAGCTGGATGAACTTGAAAAG
TATCTCCCCTTCCTACAAGACCCTGCCATCAGTATCAGAGACGTTCCCGACTCTGAGGTCCATG
ATCGAGGTGCTCAACACGGATTCCACCCCACGGTGTCTAAAGAAACTCTAGCCGGATCAGAGGA
TTTATACACGTGAAGGGCCAGGCCTCTCGCTTCTTAAGTTATTTTTTAAGACATGAAATTATTA
CAGAATTAGGTCCTTTGTTACTTTTGATACCAATTTTTGATAGGAATTGAATACTTGAAAACAT
TTTCTTTACTTTTTCTGAACCGTAACAGAAATCATGAAAACGGGTTTTTGGGGAAAAACTACTT
GAGCAGGAAGGGAAGTATGTGTATTAGCGGCAGCCGCTCGGTTCCCATGTGTTGAGGTATACTG
TTCCTTCCTCACAGCAAAAACATGTTTACTTCAGAAACCAAAAATTAATAATTAAGATGAAGAA
AGCCAATACCAGCAGGGCTTGTCTTCACTGTCAGAGGTGTGGGCGTCCTCAGACCTCCTTCCTG
TGCACCTCTGTGGGGTGCCTCGCTACTGCCATGCCCTCACACGTGGGCCCTCCAGCCCCCCAGA
ACTGTGGAAGGGCCCCAGCATGGCTTGTGGGAAGAAGCACTGGCCAGATGACGACAGTATTTGC
CAATCACTGAACCATGTTGTTCTTTTCTTTGTTGGAAAAAGCAAGCAGAGGTGATTCCCGAAAG
TCGCCGAGTTGGGCACTGGATTATGTTGTGTTCACGTGTGAGCTGGTTTTGCTTTCGGGTGTCA
GAGCGTTTAGAATGTTTCTTGTTTCCTCAGTCAGGGCGGAAGATGGAGGAACAAGGTCCAGTAA
AGGCTGCAGTTTCAAACCGTG

hide sequence

RefSeq Acc Id:

XM_039097660 ⟹ XP_038953588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,590 (-)	NCBI
mRatBN7.2	19	52,637,607 - 52,692,196 (-)	NCBI

RefSeq Acc Id:

XM_039097661 ⟹ XP_038953589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,589 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,692,196 (-)	NCBI

RefSeq Acc Id:

XM_039097662 ⟹ XP_038953590

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,589 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,692,162 (-)	NCBI

RefSeq Acc Id:

XM_039097663 ⟹ XP_038953591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,589,589 (-)	NCBI
mRatBN7.2	19	52,637,607 - 52,692,162 (-)	NCBI

RefSeq Acc Id:

XM_039097664 ⟹ XP_038953592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,563,090 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,665,706 (-)	NCBI

RefSeq Acc Id:

XM_039097665 ⟹ XP_038953593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,534,989 - 69,559,320 (-)	NCBI
mRatBN7.2	19	52,637,599 - 52,660,205 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001129634	(Get FASTA)	NCBI Sequence Viewer
	NP_001402003	(Get FASTA)	NCBI Sequence Viewer
	NP_001402004	(Get FASTA)	NCBI Sequence Viewer
	XP_006255865	(Get FASTA)	NCBI Sequence Viewer
	XP_017456736	(Get FASTA)	NCBI Sequence Viewer
	XP_038953588	(Get FASTA)	NCBI Sequence Viewer
	XP_038953589	(Get FASTA)	NCBI Sequence Viewer
	XP_038953590	(Get FASTA)	NCBI Sequence Viewer
	XP_038953591	(Get FASTA)	NCBI Sequence Viewer
	XP_038953592	(Get FASTA)	NCBI Sequence Viewer
	XP_038953593	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98840	(Get FASTA)	NCBI Sequence Viewer
	AAI05872	(Get FASTA)	NCBI Sequence Viewer
	EDL96736	(Get FASTA)	NCBI Sequence Viewer
	EDL96737	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000077631
	ENSRNOP00000077631.1
	ENSRNOP00000079791.1
	ENSRNOP00000090844
	ENSRNOP00000090844.1

RefSeq Acc Id:	NP_001129634 ⟸ NM_001136162
- Peptide Label:	isoform 2 precursor
- UniProtKB:	F1LR77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST NEELAIAYVLVGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYF ISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLG QAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQ YMKGLSHVATGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNI DTDLPGSFKDHWAKNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQY ETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQ PVLWLDQMPAPSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVR EALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVET QTTEERTQLYHAEIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSLVYYFYNLMPLSRGSSVI AYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSE TFPTLRSMIEVLNTDSTPRCLKKL hide sequence

RefSeq Acc Id:	XP_006255865 ⟸ XM_006255803
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AC50 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST NEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSR VIALEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHED FQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFEA ATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVATG QFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNIDTDLPGSFKDH WAKNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQYETPGFLPNKRI HRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAP SLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVED LLPIMKFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHA EIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMAS GKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVL NTDSTPRCLKKL hide sequence

RefSeq Acc Id:	XP_017456736 ⟸ XM_017601247
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5YBY2 (UniProtKB/TrEMBL), F1LR77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLLKQELQHRQQQEAPAGGGCPQ SGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDST NEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHILSPLGRINEAVND LTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEA IEAFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGS LQEALKNFKRCLQLEPYNEVCQYMKGLSHVATGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVK YLREYSRYLHAHLDTPLTEYNIDTDLPGSFKDHWAKNLPFLIDGYEEQPGLQPHIRDVLHQNFE GYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTR LMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAPSLSRGFNNHINLIRGQVINMRYLEYFEKILH FIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKE YDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLTLSAEFGEADAVCN LILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKI AKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSTPRCLKKL hide sequence

Ensembl Acc Id:

ENSRNOP00000070958 ⟸ ENSRNOT00000079783

Ensembl Acc Id:

ENSRNOP00000025548 ⟸ ENSRNOT00000025548

RefSeq Acc Id:	XP_038953589 ⟸ XM_039097661
- Peptide Label:	isoform X4
- UniProtKB:	A6KJ14 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953590 ⟸ XM_039097662
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6ABT0 (UniProtKB/TrEMBL), A6KJ14 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953592 ⟸ XM_039097664
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038953593 ⟸ XM_039097665
- Peptide Label:	isoform X8
- UniProtKB:	Q3KR69 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953588 ⟸ XM_039097660
- Peptide Label:	isoform X3
- UniProtKB:	F1LR77 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953591 ⟸ XM_039097663
- Peptide Label:	isoform X6
- UniProtKB:	A6KJ14 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090923 ⟸ ENSRNOT00000118217

Ensembl Acc Id:

ENSRNOP00000077631 ⟸ ENSRNOT00000118767

Ensembl Acc Id:

ENSRNOP00000089533 ⟸ ENSRNOT00000096284

Ensembl Acc Id:

ENSRNOP00000079791 ⟸ ENSRNOT00000097832

Ensembl Acc Id:

ENSRNOP00000090844 ⟸ ENSRNOT00000113253

RefSeq Acc Id:	NP_001402004 ⟸ NM_001415075
- Peptide Label:	isoform 3 precursor
- UniProtKB:	F1LR77 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402003 ⟸ NM_001415074
- Peptide Label:	isoform 1 precursor
- UniProtKB:	A0A0G2JZ94 (UniProtKB/TrEMBL), A0A8I6AC50 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JZ94-F1-model_v2	AlphaFold	A0A0G2JZ94	1-845	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701238

Promoter ID:

EPDNEW_R11761

Type:

multiple initiation site

Name:

Ttc13_1

Description:

tetratricopeptide repeat domain 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	57,484,555 - 57,484,615	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310186	AgrOrtholog
BioCyc Gene	G2FUF-5239	BioCyc
Ensembl Genes	ENSRNOG00000018884	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000097832.2	UniProtKB/TrEMBL
	ENSRNOT00000113253	ENTREZGENE
	ENSRNOT00000113253.2	UniProtKB/TrEMBL
	ENSRNOT00000118767	ENTREZGENE
	ENSRNOT00000118767.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3290.20	UniProtKB/TrEMBL
	1.25.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7379040	IMAGE-MGC_LOAD
	IMAGE:7443849	IMAGE-MGC_LOAD
InterPro	TPR-like_helical	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
MGC_CLONE	MGC:112895	IMAGE-MGC_LOAD
	MGC:125081	IMAGE-MGC_LOAD
NCBI Gene	292095	ENTREZGENE
PANTHER	TETRATRICOPEPTIDE REPEAT PROTEIN 13	UniProtKB/TrEMBL
	TETRATRICOPEPTIDE REPEAT PROTEIN 13	UniProtKB/TrEMBL
Pfam	TPR_1	UniProtKB/TrEMBL
	TPR_16	UniProtKB/TrEMBL
	TPR_8	UniProtKB/TrEMBL
PhenoGen	Ttc13	PhenoGen
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
	TPR	UniProtKB/TrEMBL
	TPR_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018884	RatGTEx
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A0G2JZ94	ENTREZGENE
	A0A8I5YBY2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZNS0_RAT	UniProtKB/TrEMBL
	A0A8I6ABT0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AC50	ENTREZGENE
	A6KJ14	ENTREZGENE, UniProtKB/TrEMBL
	A6KJ15_RAT	UniProtKB/TrEMBL
	F1LR77	ENTREZGENE
	Q3KR69	ENTREZGENE, UniProtKB/TrEMBL
	Q4G015_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ttc13	tetratricopeptide repeat domain 13	Ttc13_predicted	tetratricopeptide repeat domain 13 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ttc13_predicted	tetratricopeptide repeat domain 13 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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