Tut4 (terminal uridylyl transferase 4) - Rat Genome Database

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Gene: Tut4 (terminal uridylyl transferase 4) Rattus norvegicus
Analyze
Symbol: Tut4
Name: terminal uridylyl transferase 4
RGD ID: 1310138
Description: Predicted to enable RNA uridylyltransferase activity and miRNA binding activity. Predicted to be involved in several processes, including RNA metabolic process; interleukin-6-mediated signaling pathway; and positive regulation of macromolecule metabolic process. Predicted to act upstream of or within regulation of lipopolysaccharide-mediated signaling pathway. Predicted to be located in cytoplasmic ribonucleoprotein granule and nucleus. Human ortholog(s) of this gene implicated in liver benign neoplasm. Orthologous to human TUT4 (terminal uridylyl transferase 4); PARTICIPATES IN microRNA pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313481; terminal uridylyltransferase 4; Zcchc11; zinc finger CCHC-type containing 11; zinc finger, CCHC domain containing 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85128,354,975 - 128,535,288 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5128,431,719 - 128,535,656 (+)EnsemblGRCr8
mRatBN7.25123,201,723 - 123,306,582 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5123,203,003 - 123,306,465 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5125,825,672 - 125,929,216 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05127,548,743 - 127,652,301 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05127,600,037 - 127,703,592 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05128,063,880 - 128,168,726 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5128,083,118 - 128,168,207 (+)Ensemblrn6Rnor6.0
Rnor_5.05131,905,082 - 132,009,237 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45129,565,023 - 129,860,103 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5121,938,291 - 122,041,113 (+)NCBICelera
RGSC_v3.15129,590,506 - 129,865,448 (+)NCBI
Cytogenetic Map5q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-nonylphenol  (ISO)
4-tert-Octylphenol  (ISO)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
nicotine  (ISO)
oxaliplatin  (EXP)
p-tert-Amylphenol  (ISO)
phenytoin  (EXP)
pirinixic acid  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. miR-26a enhances miRNA biogenesis by targeting Lin28B and Zcchc11 to suppress tumor growth and metastasis. Fu X, etal., Oncogene. 2014 Aug 21;33(34):4296-306. doi: 10.1038/onc.2013.385. Epub 2013 Sep 23.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. E2F1 and KIAA0191 expression predicts breast cancer patient survival. Hallett RM and Hassell JA, BMC Res Notes. 2011 Mar 31;4:95. doi: 10.1186/1756-0500-4-95.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. The long and short of microRNA. Yates LA, etal., Cell. 2013 Apr 25;153(3):516-9. doi: 10.1016/j.cell.2013.04.003.
Additional References at PubMed
PMID:16643855   PMID:18172165   PMID:19056867   PMID:19701194   PMID:19703396   PMID:22658674   PMID:22664934   PMID:22681889   PMID:25979828   PMID:28671666   PMID:28792939   PMID:30122351  


Genomics

Comparative Map Data
Tut4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85128,354,975 - 128,535,288 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5128,431,719 - 128,535,656 (+)EnsemblGRCr8
mRatBN7.25123,201,723 - 123,306,582 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5123,203,003 - 123,306,465 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5125,825,672 - 125,929,216 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05127,548,743 - 127,652,301 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05127,600,037 - 127,703,592 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05128,063,880 - 128,168,726 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5128,083,118 - 128,168,207 (+)Ensemblrn6Rnor6.0
Rnor_5.05131,905,082 - 132,009,237 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45129,565,023 - 129,860,103 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5121,938,291 - 122,041,113 (+)NCBICelera
RGSC_v3.15129,590,506 - 129,865,448 (+)NCBI
Cytogenetic Map5q34NCBI
TUT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38152,423,275 - 52,553,463 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl152,408,282 - 52,553,487 (-)Ensemblhg38GRCh38
GRCh37152,888,947 - 53,018,764 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36152,661,535 - 52,791,331 (-)NCBIBuild 36Build 36hg18NCBI36
Celera151,175,645 - 51,305,459 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef151,004,891 - 51,134,679 (-)NCBIHuRef
CHM1_1153,006,328 - 53,136,112 (-)NCBICHM1_1
T2T-CHM13v2.0152,304,743 - 52,434,560 (-)NCBIT2T-CHM13v2.0
Tut4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394108,316,607 - 108,416,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4108,316,623 - 108,416,618 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384108,459,410 - 108,559,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,459,426 - 108,559,421 (+)Ensemblmm10GRCm38
MGSCv374108,132,031 - 108,232,020 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364107,957,358 - 108,057,347 (+)NCBIMGSCv36mm8
Celera4106,802,820 - 106,902,634 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.55NCBI
Tut4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554646,646,245 - 6,734,066 (+)Ensembl
ChiLan1.0NW_0049554646,610,350 - 6,734,606 (+)NCBIChiLan1.0ChiLan1.0
TUT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21174,295,626 - 174,426,251 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11173,438,248 - 173,582,113 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0151,684,408 - 51,815,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1153,292,477 - 53,422,893 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl153,292,477 - 53,422,893 (-)EnsemblpanPan2panpan1.1
TUT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,832,208 - 8,958,136 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,832,199 - 9,047,152 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha158,984,410 - 9,117,778 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0158,955,383 - 9,088,939 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,955,377 - 9,067,361 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,768,557 - 8,901,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,857,421 - 8,990,869 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,874,086 - 9,008,805 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tut4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505866,857,291 - 66,946,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365228,469,443 - 8,560,447 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365228,468,092 - 8,560,453 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,692,797 - 159,793,758 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16159,655,658 - 159,794,450 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26147,319,840 - 147,467,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TUT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12080,395,484 - 80,522,442 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2080,395,581 - 80,523,671 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603336,748,099 - 36,875,297 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tut4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624859675,754 - 800,343 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624859676,112 - 800,894 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tut4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1146,298,184 - 46,399,507 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tut4
851 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)584630798129630798Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5124314582133270832Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)584630798129630798Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)592583776137583776Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)598972960143972960Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584630798129630798Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)594034903139034903Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)595062526133270832Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589369373134369373Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)597492524133270832Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)592881678137881678Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)595062526133270832Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat

Markers in Region
RH140592  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25123,281,631 - 123,281,811 (+)MAPPERmRatBN7.2
Rnor_6.05128,143,484 - 128,143,663NCBIRnor6.0
Rnor_5.05131,983,901 - 131,984,080UniSTSRnor5.0
RGSC_v3.45129,811,182 - 129,811,361UniSTSRGSC3.4
Celera5122,016,428 - 122,016,607UniSTS
RH 3.4 Map5809.2UniSTS
Cytogenetic Map5q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079161   ⟹   ENSRNOP00000070861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5128,431,719 - 128,535,171 (+)Ensembl
mRatBN7.2 Ensembl5123,203,003 - 123,306,465 (+)Ensembl
Rnor_6.0 Ensembl5128,083,118 - 128,168,207 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096908   ⟹   ENSRNOP00000087360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5128,431,719 - 128,535,171 (+)Ensembl
mRatBN7.2 Ensembl5123,203,003 - 123,306,465 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000124337   ⟹   ENSRNOP00000100961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5128,432,271 - 128,535,656 (+)Ensembl
RefSeq Acc Id: NM_001107953   ⟹   NP_001101423
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,431,719 - 128,535,171 (+)NCBI
mRatBN7.25123,203,003 - 123,306,465 (+)NCBI
Rnor_6.05128,063,880 - 128,168,726 (+)NCBI
Rnor_5.05131,905,082 - 132,009,237 (+)NCBI
RGSC_v3.45129,565,023 - 129,860,103 (+)RGD
Celera5121,938,291 - 122,041,113 (+)RGD
Sequence:
RefSeq Acc Id: XM_039109972   ⟹   XP_038965900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,535,288 (+)NCBI
mRatBN7.25123,201,723 - 123,306,582 (+)NCBI
RefSeq Acc Id: XM_039109973   ⟹   XP_038965901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,535,288 (+)NCBI
mRatBN7.25123,201,723 - 123,306,582 (+)NCBI
RefSeq Acc Id: XM_039109974   ⟹   XP_038965902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,535,288 (+)NCBI
mRatBN7.25123,201,723 - 123,306,582 (+)NCBI
RefSeq Acc Id: XM_039109975   ⟹   XP_038965903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,535,288 (+)NCBI
mRatBN7.25123,201,723 - 123,306,582 (+)NCBI
RefSeq Acc Id: XM_039109976   ⟹   XP_038965904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,535,288 (+)NCBI
mRatBN7.25123,201,723 - 123,306,582 (+)NCBI
RefSeq Acc Id: XM_063287716   ⟹   XP_063143786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,533,690 (+)NCBI
RefSeq Acc Id: XM_063287718   ⟹   XP_063143788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,533,690 (+)NCBI
RefSeq Acc Id: XM_063287719   ⟹   XP_063143789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,354,975 - 128,533,690 (+)NCBI
RefSeq Acc Id: XM_063287720   ⟹   XP_063143790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,533,690 (+)NCBI
RefSeq Acc Id: XM_063287721   ⟹   XP_063143791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,533,690 (+)NCBI
RefSeq Acc Id: XM_063287722   ⟹   XP_063143792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,535,288 (+)NCBI
RefSeq Acc Id: XM_063287723   ⟹   XP_063143793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85128,430,456 - 128,533,690 (+)NCBI
RefSeq Acc Id: NP_001101423   ⟸   NM_001107953
- UniProtKB: A0A0G2JZ04 (UniProtKB/TrEMBL),   A6JYV0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070861   ⟸   ENSRNOT00000079161
RefSeq Acc Id: XP_038965901   ⟸   XM_039109973
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038965900   ⟸   XM_039109972
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038965902   ⟸   XM_039109974
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038965903   ⟸   XM_039109975
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038965904   ⟸   XM_039109976
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000087360   ⟸   ENSRNOT00000096908
RefSeq Acc Id: XP_063143789   ⟸   XM_063287719
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063143792   ⟸   XM_063287722
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GFX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143788   ⟸   XM_063287718
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063143786   ⟸   XM_063287716
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063143790   ⟸   XM_063287720
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063143791   ⟸   XM_063287721
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063143793   ⟸   XM_063287723
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000100961   ⟸   ENSRNOT00000124337
Protein Domains
CCHC-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZ04-F1-model_v2 AlphaFold A0A0G2JZ04 1-1458 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310138 AgrOrtholog
BioCyc Gene G2FUF-40386 BioCyc
Ensembl Genes ENSRNOG00000052062 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079161 ENTREZGENE
  ENSRNOT00000079161.3 UniProtKB/TrEMBL
  ENSRNOT00000096908 ENTREZGENE
  ENSRNOT00000096908.2 UniProtKB/TrEMBL
  ENSRNOT00000124337 ENTREZGENE
  ENSRNOT00000124337.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro MTPAP-like_central UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  TUTase_dom UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
KEGG Report rno:313481 UniProtKB/TrEMBL
NCBI Gene 313481 ENTREZGENE
PANTHER 4FE-4S FERREDOXIN-TYPE DOMAIN-CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  POLY A POLYMERASE CID PAP -RELATED UniProtKB/TrEMBL
  TERMINAL URIDYLYLTRANSFERASE 4 UniProtKB/TrEMBL
Pfam MTPAP-like_central UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  TUTase UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PhenoGen Tut4 PhenoGen
PROSITE ZF_CCHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052062 RatGTEx
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A0G2JZ04 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GFX3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7Z7_RAT UniProtKB/TrEMBL
  A6JYV0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-04-27 Tut4  terminal uridylyl transferase 4  Zcchc11  zinc finger CCHC-type containing 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-17 Zcchc11  zinc finger CCHC-type containing 11  Zcchc11  zinc finger, CCHC domain containing 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zcchc11  zinc finger, CCHC domain containing 11   Zcchc11_predicted  zinc finger, CCHC domain containing 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zcchc11_predicted  zinc finger, CCHC domain containing 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED