Hnf4g (hepatocyte nuclear factor 4, gamma) - Rat Genome Database

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Gene: Hnf4g (hepatocyte nuclear factor 4, gamma) Rattus norvegicus
Analyze
Symbol: Hnf4g
Name: hepatocyte nuclear factor 4, gamma
RGD ID: 1310102
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and nuclear receptor activity. Predicted to be involved in cell differentiation and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within gene expression and positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human HNF4G (hepatocyte nuclear factor 4 gamma); PARTICIPATES IN maturity-onset diabetes of the young pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hepatocyte nuclear factor 4-gamma; LOC365744
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8299,792,942 - 99,943,811 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl299,792,942 - 99,943,811 (-)EnsemblGRCr8
mRatBN7.2297,885,773 - 98,036,650 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl297,887,432 - 98,036,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2104,468,305 - 104,616,180 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02102,589,371 - 102,737,257 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0297,617,327 - 97,765,461 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02100,225,880 - 100,372,710 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2100,225,888 - 100,372,252 (-)Ensemblrn6Rnor6.0
Rnor_5.02119,961,786 - 120,108,045 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42100,367,290 - 100,518,496 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera293,381,225 - 93,528,222 (-)NCBICelera
RGSC_v3.12100,312,845 - 100,331,225 (-)NCBI
Cytogenetic Map2q23NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10786614   PMID:12220531   PMID:23896584  


Genomics

Comparative Map Data
Hnf4g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8299,792,942 - 99,943,811 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl299,792,942 - 99,943,811 (-)EnsemblGRCr8
mRatBN7.2297,885,773 - 98,036,650 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl297,887,432 - 98,036,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2104,468,305 - 104,616,180 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02102,589,371 - 102,737,257 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0297,617,327 - 97,765,461 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02100,225,880 - 100,372,710 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2100,225,888 - 100,372,252 (-)Ensemblrn6Rnor6.0
Rnor_5.02119,961,786 - 120,108,045 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42100,367,290 - 100,518,496 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera293,381,225 - 93,528,222 (-)NCBICelera
RGSC_v3.12100,312,845 - 100,331,225 (-)NCBI
Cytogenetic Map2q23NCBI
HNF4G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38875,407,649 - 75,566,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl875,407,914 - 75,566,834 (+)Ensemblhg38GRCh38
GRCh37876,319,884 - 76,479,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36876,614,758 - 76,641,624 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34876,614,757 - 76,641,623NCBI
Celera872,447,027 - 72,473,891 (+)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef871,939,833 - 71,966,703 (+)NCBIHuRef
CHM1_1876,503,705 - 76,530,572 (+)NCBICHM1_1
T2T-CHM13v2.0875,837,130 - 75,996,323 (+)NCBIT2T-CHM13v2.0
Hnf4g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3933,573,090 - 3,724,863 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl33,573,084 - 3,724,860 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3833,508,030 - 3,659,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl33,508,030 - 3,658,052 (+)Ensemblmm10GRCm38
MGSCv3733,508,030 - 3,659,800 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3633,493,753 - 3,643,025 (+)NCBIMGSCv36mm8
Celera33,597,238 - 3,748,931 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map31.82NCBI
Hnf4g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554445,080,954 - 5,107,542 (-)Ensembl
ChiLan1.0NW_0049554445,081,013 - 5,157,988 (-)NCBIChiLan1.0ChiLan1.0
HNF4G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2791,157,513 - 91,312,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1866,785,277 - 66,940,105 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0871,947,924 - 72,102,934 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1873,666,576 - 73,743,437 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl873,716,604 - 73,743,865 (+)EnsemblpanPan2panpan1.1
HNF4G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12923,683,380 - 23,801,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2923,732,339 - 23,801,519 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2923,943,412 - 24,064,667 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02923,789,896 - 23,912,012 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2923,841,379 - 23,910,074 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12923,850,614 - 23,972,215 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02923,884,966 - 24,006,588 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02924,237,724 - 24,359,110 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hnf4g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530355,478,667 - 55,609,805 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366483,943,626 - 3,968,622 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366483,943,632 - 3,968,550 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNF4G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl460,505,385 - 60,595,789 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1460,505,388 - 60,641,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HNF4G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1870,971,287 - 71,133,212 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl871,106,434 - 71,133,206 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603970,236,683 - 70,393,483 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnf4g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474415,648,466 - 15,683,973 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474415,648,463 - 15,797,403 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Hnf4g
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13140,875,527 - 141,015,788 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hnf4g
755 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:302
Count of miRNA genes:194
Interacting mature miRNAs:225
Transcripts:ENSRNOT00000011890
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)261556902106556902Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)282947902127947902Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)284056790132859658Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)278269809104744824Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
2317886Alcrsp23Alcohol response QTL 232.40.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)295142371140142371Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
2317058Aia13Adjuvant induced arthritis QTL 132.9joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)278269809123269809Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)261051541105724065Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)293602631145807373Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)261051883104684275Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)282214549127214549Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)261051541105724065Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260861391105861391Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)261051541143746880Rat

Markers in Region
D2Got57  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2297,929,885 - 97,930,056 (+)MAPPERmRatBN7.2
Rnor_6.02100,268,599 - 100,268,769NCBIRnor6.0
Rnor_5.02120,004,339 - 120,004,509UniSTSRnor5.0
RGSC_v3.42100,411,472 - 100,411,643RGDRGSC3.4
RGSC_v3.42100,411,473 - 100,411,643UniSTSRGSC3.4
Celera293,423,432 - 93,423,603UniSTS
RGSC_v3.12100,356,435 - 100,356,605RGD
RH 3.4 Map2621.0UniSTS
RH 3.4 Map2621.0RGD
Cytogenetic Map2q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 5 11 105 90 89 59 19 59 6 218 59 9 78 81 78 30 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000011890   ⟹   ENSRNOP00000011890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl299,792,942 - 99,943,811 (-)Ensembl
mRatBN7.2 Ensembl297,887,432 - 98,036,592 (-)Ensembl
Rnor_6.0 Ensembl2100,226,328 - 100,372,252 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086760   ⟹   ENSRNOP00000070293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl299,792,942 - 99,818,385 (-)Ensembl
mRatBN7.2 Ensembl297,887,432 - 97,911,210 (-)Ensembl
Rnor_6.0 Ensembl2100,225,888 - 100,249,811 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119478   ⟹   ENSRNOP00000082188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl297,894,111 - 97,908,860 (-)Ensembl
RefSeq Acc Id: NM_001415087   ⟹   NP_001402016
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8299,792,942 - 99,943,811 (-)NCBI
mRatBN7.2297,885,773 - 98,036,650 (-)NCBI
RefSeq Acc Id: NM_001415088   ⟹   NP_001402017
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8299,792,942 - 99,818,385 (-)NCBI
mRatBN7.2297,885,773 - 97,911,218 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001402016 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402017 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM01044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011890
  ENSRNOP00000011890.7
  ENSRNOP00000070293
  ENSRNOP00000070293.1
Ensembl Acc Id: ENSRNOP00000011890   ⟸   ENSRNOT00000011890
Ensembl Acc Id: ENSRNOP00000070293   ⟸   ENSRNOT00000086760
Ensembl Acc Id: ENSRNOP00000082188   ⟸   ENSRNOT00000119478
RefSeq Acc Id: NP_001402016   ⟸   NM_001415087
- Peptide Label: isoform 2
- UniProtKB: A6IH96 (UniProtKB/TrEMBL),   F1M342 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402017   ⟸   NM_001415088
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JXJ1 (UniProtKB/TrEMBL),   A6IH96 (UniProtKB/TrEMBL),   F1M342 (UniProtKB/TrEMBL)
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXJ1-F1-model_v2 AlphaFold A0A0G2JXJ1 1-462 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691249
Promoter ID:EPDNEW_R1772
Type:initiation region
Name:Hnf4g_1
Description:hepatocyte nuclear factor 4, gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R1773  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02100,249,623 - 100,249,683EPDNEW
RGD ID:13691248
Promoter ID:EPDNEW_R1773
Type:initiation region
Name:Hnf4g_2
Description:hepatocyte nuclear factor 4, gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R1772  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02100,372,291 - 100,372,351EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310102 AgrOrtholog
BioCyc Gene G2FUF-53661 BioCyc
Ensembl Genes ENSRNOG00000008971 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011890 ENTREZGENE
  ENSRNOT00000011890.8 UniProtKB/TrEMBL
  ENSRNOT00000086760 ENTREZGENE
  ENSRNOT00000086760.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro HNF4-like_DBD UniProtKB/TrEMBL
  HNF4_LBD UniProtKB/TrEMBL
  NHR_like_domain UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd_core UniProtKB/TrEMBL
  Nuclear_hormone_rcpt_NR2 UniProtKB/TrEMBL
  Str_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene 365744 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PhenoGen Hnf4g PhenoGen
PRINTS COUPTNFACTOR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008971 RatGTEx
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  Str_ncl_receptor UniProtKB/TrEMBL
UniProt A0A0G2JXJ1 ENTREZGENE, UniProtKB/TrEMBL
  A6IH96 ENTREZGENE, UniProtKB/TrEMBL
  F1M342 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Hnf4g  hepatocyte nuclear factor 4, gamma   Hnf4g_predicted  hepatocyte nuclear factor 4, gamma (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Hnf4g_predicted  hepatocyte nuclear factor 4, gamma (predicted)      Symbol and Name status set to approved 70820 APPROVED