HNF4G (hepatocyte nuclear factor 4 gamma) - Rat Genome Database

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Gene: HNF4G (hepatocyte nuclear factor 4 gamma) Pan paniscus
Analyze
Symbol: HNF4G
Name: hepatocyte nuclear factor 4 gamma
RGD ID: 11717606
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); intercellular bridge (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hepatocyte nuclear factor 4-gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2791,157,513 - 91,312,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1866,785,277 - 66,940,105 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0871,947,924 - 72,102,934 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1873,666,576 - 73,743,437 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl873,716,604 - 73,743,865 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HNF4G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2791,157,513 - 91,312,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1866,785,277 - 66,940,105 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0871,947,924 - 72,102,934 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1873,666,576 - 73,743,437 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl873,716,604 - 73,743,865 (+)Ensemblpanpan1.1panPan2
HNF4G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38875,407,649 - 75,566,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl875,407,914 - 75,566,834 (+)EnsemblGRCh38hg38GRCh38
GRCh37876,319,884 - 76,479,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36876,614,758 - 76,641,624 (+)NCBINCBI36Build 36hg18NCBI36
Build 34876,614,757 - 76,641,623NCBI
Celera872,447,027 - 72,473,891 (+)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef871,939,833 - 71,966,703 (+)NCBIHuRef
CHM1_1876,503,705 - 76,530,572 (+)NCBICHM1_1
T2T-CHM13v2.0875,837,130 - 75,996,323 (+)NCBIT2T-CHM13v2.0
Hnf4g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3933,573,090 - 3,724,863 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl33,573,084 - 3,724,860 (+)EnsemblGRCm39 Ensembl
GRCm3833,508,030 - 3,659,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl33,508,030 - 3,658,052 (+)EnsemblGRCm38mm10GRCm38
MGSCv3733,508,030 - 3,659,800 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3633,493,753 - 3,643,025 (+)NCBIMGSCv36mm8
Celera33,597,238 - 3,748,931 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map31.82NCBI
Hnf4g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8299,792,942 - 99,943,811 (-)NCBIGRCr8
mRatBN7.2297,885,773 - 98,036,650 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl297,887,432 - 98,036,592 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2104,468,305 - 104,616,180 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02102,589,371 - 102,737,257 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0297,617,327 - 97,765,461 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02100,225,880 - 100,372,710 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2100,225,888 - 100,372,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02119,961,786 - 120,108,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42100,367,290 - 100,518,496 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12100,312,845 - 100,331,225 (-)NCBI
Celera293,381,225 - 93,528,222 (-)NCBICelera
Cytogenetic Map2q23NCBI
Hnf4g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554445,080,954 - 5,107,542 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554445,081,013 - 5,157,988 (-)NCBIChiLan1.0ChiLan1.0
HNF4G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12923,683,380 - 23,801,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2923,732,339 - 23,801,519 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2923,943,412 - 24,064,667 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02923,789,896 - 23,912,012 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2923,841,379 - 23,910,074 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12923,850,614 - 23,972,215 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02923,884,966 - 24,006,588 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02924,237,724 - 24,359,110 (+)NCBIUU_Cfam_GSD_1.0
Hnf4g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530355,478,667 - 55,609,805 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366483,943,626 - 3,968,622 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366483,943,632 - 3,968,550 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNF4G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl460,505,385 - 60,595,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1460,505,388 - 60,641,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HNF4G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1870,971,287 - 71,133,212 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl871,106,434 - 71,133,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603970,236,683 - 70,393,483 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnf4g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474415,648,466 - 15,683,973 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474415,648,463 - 15,797,403 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000045628   ⟹   ENSPPAP00000022814
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl873,716,604 - 73,743,865 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000045643   ⟹   ENSPPAP00000022830
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl873,720,391 - 73,740,704 (+)Ensembl
RefSeq Acc Id: XM_034966254   ⟹   XP_034822145
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2791,157,573 - 91,312,414 (+)NCBI
NHGRI_mPanPan1866,785,277 - 66,940,105 (+)NCBI
Mhudiblu_PPA_v0871,947,924 - 72,102,934 (+)NCBI
RefSeq Acc Id: XM_055116668   ⟹   XP_054972643
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2791,157,513 - 91,312,400 (+)NCBI
NHGRI_mPanPan1866,785,310 - 66,940,105 (+)NCBI
RefSeq Acc Id: XM_055116669   ⟹   XP_054972644
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2791,157,641 - 91,312,414 (+)NCBI
NHGRI_mPanPan1866,785,345 - 66,940,105 (+)NCBI
RefSeq Acc Id: XM_055116670   ⟹   XP_054972645
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2791,179,107 - 91,312,414 (+)NCBI
NHGRI_mPanPan1866,806,827 - 66,940,105 (+)NCBI
RefSeq Acc Id: XM_055116671   ⟹   XP_054972646
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2791,285,553 - 91,312,414 (+)NCBI
NHGRI_mPanPan1866,913,268 - 66,940,105 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034822145   ⟸   XM_034966254
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B005 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000022814   ⟸   ENSPPAT00000045628
RefSeq Acc Id: ENSPPAP00000022830   ⟸   ENSPPAT00000045643
RefSeq Acc Id: XP_054972643   ⟸   XM_055116668
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B005 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054972644   ⟸   XM_055116669
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B005 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054972645   ⟸   XM_055116670
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B005 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054972646   ⟸   XM_055116671
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B005 (UniProtKB/TrEMBL)
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034544 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045628.1 UniProtKB/TrEMBL
  ENSPPAT00000045643.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro HNF4-like_DBD UniProtKB/TrEMBL
  HNF4_LBD UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene HNF4G ENTREZGENE
PANTHER HEPATOCYTE NUCLEAR FACTOR 4-GAMMA UniProtKB/TrEMBL
  NUCLEAR HORMONE RECEPTOR UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS COUPTNFACTOR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A2R9AZR3_PANPA UniProtKB/TrEMBL
  A0A2R9B005 ENTREZGENE, UniProtKB/TrEMBL