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Gene: Ccdc116 (coiled-coil domain containing 116) Rattus norvegicus

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Symbol:

Ccdc116

Name:

coiled-coil domain containing 116

RGD ID:

1310080

Description:

Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in centrosome. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human CCDC116 (coiled-coil domain containing 116); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; methamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain-containing protein 116; LOC287936; Sdf2l1; stromal cell-derived factor 2-like 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	97,346,927 - 97,354,827 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	97,346,675 - 97,354,824 (+)	Ensembl				GRCr8
mRatBN7.2	11	83,842,707 - 83,850,607 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,845,557 - 83,850,607 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	92,575,734 - 92,578,816 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,236,877 - 85,239,959 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,290,456 - 84,293,538 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	88,092,794 - 88,100,220 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	88,095,170 - 88,098,252 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	91,147,583 - 91,150,783 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	85,849,737 - 85,852,819 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	82,607,768 - 82,610,850 (+)	NCBI		Celera
RGSC_v3.1	11	85,890,333 - 85,893,416 (+)	NCBI
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lung cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

15-acetyldeoxynivalenol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,6-di-tert-butyl-4-methylphenol (ISO)

6-propyl-2-thiouracil (EXP)

aldehydo-D-glucose (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

copper(II) sulfate (ISO)

curcumin (ISO)

D-glucose (ISO)

folic acid (ISO)

fucoxanthin (ISO)

glucose (ISO)

L-methionine (ISO)

methamphetamine (EXP)

N-methyl-4-phenylpyridinium (EXP)

PCB138 (ISO)

phenobarbital (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (EXP)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

centrosome (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Integrating expression-related SNPs into genome-wide gene- and pathway-based analyses identified novel lung cancer susceptibility genes.	Wang Y, etal., Int J Cancer. 2018 Apr 15;142(8):1602-1610. doi: 10.1002/ijc.31182. Epub 2017 Dec 12.

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:25074808

Genomics

Comparative Map Data

Ccdc116
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	97,346,927 - 97,354,827 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	97,346,675 - 97,354,824 (+)	Ensembl				GRCr8
mRatBN7.2	11	83,842,707 - 83,850,607 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,845,557 - 83,850,607 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	92,575,734 - 92,578,816 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,236,877 - 85,239,959 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,290,456 - 84,293,538 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	88,092,794 - 88,100,220 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	88,095,170 - 88,098,252 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	91,147,583 - 91,150,783 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	85,849,737 - 85,852,819 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	82,607,768 - 82,610,850 (+)	NCBI		Celera
RGSC_v3.1	11	85,890,333 - 85,893,416 (+)	NCBI
Cytogenetic Map	11	q23	NCBI

CCDC116
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	21,632,760 - 21,637,329 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	21,632,716 - 21,637,329 (+)	Ensembl			hg38	GRCh38
GRCh37	22	21,987,049 - 21,991,618 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	20,317,086 - 20,321,616 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	22	5,804,626 - 5,809,156 (+)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	4,944,961 - 4,949,491 (+)	NCBI		HuRef
CHM1_1	22	21,987,284 - 21,991,814 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	22,046,244 - 22,050,813 (+)	NCBI		T2T-CHM13v2.0

Ccdc116
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	16,956,928 - 16,965,459 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	16,956,928 - 16,965,093 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	17,139,064 - 17,147,802 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	17,139,064 - 17,147,229 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	17,139,157 - 17,144,516 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	17,052,627 - 17,060,791 (-)	NCBI		MGSCv36	mm8
Celera	16	17,711,862 - 17,717,221 (-)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	10.62	NCBI

Ccdc116
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955442	17,474,743 - 17,482,389 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC116
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	31,176,036 - 31,187,268 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	33,724,764 - 33,735,997 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	3,754,748 - 3,759,940 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	20,238,580 - 20,243,187 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	20,238,733 - 20,243,187 (+)	Ensembl			panPan2	panpan1.1

CCDC116
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	30,907,953 - 30,912,769 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	30,908,581 - 30,911,127 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	30,864,195 - 30,870,084 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	32,312,688 - 32,318,577 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	32,313,781 - 32,318,568 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	30,362,022 - 30,367,911 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	29,985,757 - 29,991,644 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	31,075,674 - 31,081,563 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc116
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	140,670,598 - 140,696,298 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936619	2,057,764 - 2,062,781 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC116
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	50,255,859 - 50,260,743 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,702,434 - 53,711,241 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC116
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	4,472,976 - 4,478,265 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	4,473,531 - 4,477,137 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666085	2,519,682 - 2,526,208 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc116
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	1,183,749 - 1,190,645 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc116
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	2,427,290 - 2,431,252 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	36
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000041557
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	3	39	134	61	60	29	78	29	6	250	142	5	117	61	78	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041557 ⟹ ENSRNOP00000040746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	97,346,675 - 97,354,824 (+)	Ensembl
mRatBN7.2 Ensembl	11	83,845,557 - 83,850,607 (+)	Ensembl
Rnor_6.0 Ensembl	11	88,095,170 - 88,098,252 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125813 ⟹ ENSRNOP00000102138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	97,347,116 - 97,352,858 (+)	Ensembl

RefSeq Acc Id:

NM_001024740 ⟹ NP_001019911

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,349,777 - 97,352,859 (+)	NCBI
mRatBN7.2	11	83,845,557 - 83,848,639 (+)	NCBI
Rnor_6.0	11	88,095,170 - 88,098,252 (+)	NCBI
Rnor_5.0	11	91,147,583 - 91,150,783 (+)	NCBI
RGSC_v3.4	11	85,849,737 - 85,852,819 (+)	RGD
Celera	11	82,607,768 - 82,610,850 (+)	RGD

Sequence:

show sequence

GCAGGTTGGGGGCTCCAGGATGCCTCAGGTCTGAAAGAAAGAAGTCTGGACACACATTTGGACC
CAGACACAGTTGCAAACAAAAGGCAGTGACTTGGGAATGTCCACAGAGAGGAGTCTGCATCTGT
GCTGTAGGACCTGAAGAAGGAAGCAGAAAACAAATTTAATTATCCACATCATGGCAAGGTGCCG
CCACCACTCAGGTTATCTGGCTGACGACGAGGCTGCTCACGGCACCTATGTGGCTCGGCTGCCC
AAGAAGCATCTGTTGCCAGAGATGAGGCCAACTTGCAAGCTTGGGCGTGTACCACACCTACCAT
CAATGAACCGATACTCAGAGCGCCAGGGCCACCAGCAAAACCTTAGGCGCCCTCGGGCATTTGG
TGGCTTCCTGGATTTCCTCACGGAGGGTCAGGTACTGGACAGCTTGCAGACAGTCGTGGAGCAG
GCAACAGAATGTGTGGCTACCATGAAGACAGAGGCTGGAGTGCCACTGGTGGATGTACAAGACC
GAGTGGAGGTGCCAAATAGTAGGCATCGTTCTCGAGGCAGACCCAGCATCAACACTGTGCATCG
GCACCGTGCTCGGCCCACGCTGTGTGCTGGACACCCAAACAATTACCCATCTTGCTCCAGCTCC
ATGTCTGACTCCCATAGCAGCGTCACAGCTGGATGGCTGGGGTCCCGCAGCCAAGACAGTGACC
TGGGTGCCAGAGGCGTAGGCTCATTGCCACCCATGAGGGACAAACTCCTGCTTGAGAAAAACCT
CAAGAGGCTGCTACGACTGGAAAGCAAAGGGAAAGTTCTGAATCAACACTGCTCCCAGAGGGAT
TCCCTGCTATGGGACTCACTGGGCAGCCAGAGCAGCAGTCAGCCGACCCGGGAACAGCCCCTGT
CTTGGTTCTCTGGGCTTCTGGCCTCCACTTCAGTCACCCCTGAAACTTCAGAGTTGGGACTCGG
AGAACAAGAGATGATTTTCCTCAAACAAGAATTAAACAAGGAGATAAAGTCACTGCTGAACCAG
CCAACCTCCTTCAACCTGCCTACCTATTGTCCACTCAGGGAACCCCATCGTACCCTGGATTTCC
TGTCTGAGCACCACCTCTTTCCAGCCCTGCAGCGTGTGGTCAGCCAGGCTGTAGACAAGCTGAG
CCATGCCTGCCGCCACAATGGCTTCCCCCTCTTCCCTGTTACCTCAGAGCTGTCTCCAGTGTTT
CCTGGGAACTCCGATCTTCAACCCAGCTCTAAGGCTTCCTTACCCACCGACAGGGAGGCTAGGG
GAGAGACTTGTTATTCTCCCACCTCGGCCTCCAGCCCTAAGACATCTCACAGAAAAAGCAAGGA
CAGAAGGGGCTCCCCATCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAGGTGACACCT
ACAGAAGTCTCTAATGTCCCTATCCCCTCATCCCAGTGCATGCTGAAGTCTCCTAACTCTGACC
TCAAATTGCAGAAACAAACTACAGCCTCAAACCACAACCATATACCTCAGCCCCGCCATGGCCT
GCACCTCACCCTGCCTGCCCCTGGGATCACAGTGGAGGTGGCCTCCTGCCAGGGCCAACTCAGG
GGCCAGGTCCAGCATAGTCTTGCCACTCCCTGCCATCTCCACTCCCATTTCCCTTTCCCTGTGT
TCTCCCCATTCCTTCCCCTGGGAAAAAGCTTTTCCACTTCCCCTCCTACACTGTGTCCTGAGGT
GTCCTCCAGAGCAGGGCTGGAGGTCTTGGAGGGACATTTGAAGGGAAGGGGCTGCTTCACCCAT
CACTTCTAGTAGCCACTGTTACTGGCAAGGTGCCCAAGGACAAGATCTCTTGCCCTGCACTGTG
GAACTCCTCCGAGGTAGATATAAGCTGCCTGGGGATCAGGTGTCCTAGTCCATCTATTTCCAGT
GTCCAGATGTTGTCAAAGATTAATAAAGGCTATTTTTTACCCTGAAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_017597901 ⟹ XP_017453390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,349,669 - 97,354,827 (+)	NCBI
mRatBN7.2	11	83,845,450 - 83,850,607 (+)	NCBI
Rnor_6.0	11	88,095,060 - 88,100,220 (+)	NCBI

Sequence:

show sequence

AATGAGCATCCTGGGAGGCTGCGAGGGTAGGATTCCAGTGCACTGTGCGGTAGAGCTTTAAAGG
GTGCTGAATGAGTGAACCCCTAGAAGCACAGCAGAGACTCTGAGGAGTCTGCATCTGTGCTGTA
GGACCTGAAGAAGGAAGCAGAAAACAAATTTAATTATCCACATCATGGCAAGGTGCCGCCACCA
CTCAGGTTATCTGGCTGACGACGAGGCTGCTCACGGCACCTATGTGGCTCGGCTGCCCAAGAAG
CATCTGTTGCCAGAGATGAGGCCAACTTGCAAGCTTGGGCGTGTACCACACCTACCATCAATGA
ACCGATACTCAGAGCGCCAGGGCCACCAGCAAAACCTTAGGCGCCCTCGGGCATTTGGTGGCTT
CCTGGATTTCCTCACGGAGGGTCAGGTACTGGACAGCTTGCAGACAGTCGTGGAGCAGGCAACA
GAATGTGTGGCTACCATGAAGACAGAGGCTGGAGTGCCACTGGTGGATGTACAAGACCGAGTGG
AGGTGCCAAATAGTAGGCATCGTTCTCGAGGCAGACCCAGCATCAACACTGTGCATCGGCACCG
TGCTCGGCCCACGCTGTGTGCTGGACACCCAAACAATTACCCATCTTGCTCCAGCTCCATGTCT
GACTCCCATAGCAGCGTCACAGCTGGATGGCTGGGGTCCCGCAGCCAAGACAGTGACCTGGGTG
CCAGAGGCGTAGGCTCATTGCCACCCATGAGGGACAAACTCCTGCTTGAGAAAAACCTCAAGAG
GCTGCTACGACTGGAAAGCAAAGGGAAAGTTCTGAATCAACACTGCTCCCAGAGGGATTCCCTG
CTATGGGACTCACTGGGCAGCCAGAGCAGCAGTCAGCCGACCCGGGAACAGCCCCTGTCTTGGT
TCTCTGGGCTTCTGGCCTCCACTTCAGTCACCCCTGAAACTTCAGAGTTGGGACTCGGAGAACA
AGAGATGATTTTCCTCAAACAAGAATTAAACAAGGAGATAAAGTCACTGCTGAACCAGCCAACC
TCCTTCAACCTGCCTACCTATTGTCCACTCAGGGAACCCCATCGTACCCTGGATTTCCTGTCTG
AGCACCACCTCTTTCCAGCCCTGCAGCGTGTGGTCAGCCAGGCTGTAGACAAGCTGAGCCATGC
CTGCCGCCACAATGGCTTCCCCCTCTTCCCTGTTACCTCAGAGCTGTCTCCAGTGTTTCCTGGG
AACTCCGATCTTCAACCCAGCTCTAAGGCTTCCTTACCCACCGACAGGGAGGCTAGGGGAGAGA
CTTGTTATTCTCCCACCTCGGCCTCCAGCCCTAAGACATCTCACAGAAAAAGCAAGGACAGAAG
GGGCTCCCCATCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAGAGCCCCAACAAGTTT
TTGAAGAAGAAGGCCCTGCCCTCCATCTCATCGGTGTCCAGCTTATCCTACATCTCTAACCCCT
GGTTTGAGGAACTCACTAACTTCTTGGTTGAGCAGGCAGTCTCCTTGCTTATCTGCAAGTACAA
GTTTGAGGAAAGCCTCAACAAGCAGCTTGGTTTCATCTCCTTTCCGATCACTGAGGTTCTCATG
GACATCTTTCTGGGCTTCAAGAAGGTGAAGGGTACCCACATCCGCCTATCTTCAGACATCAACT
GGACCTGTCTTCTGCGTAAGTTGGAGGAAGCAGAGATGGCGCGGCAGGCCCTGAGACATGTCTC
CAGGTCAGGAACCTCTCCACATAGCACCTCCCGTATTGTCACCTCCCACCATAGCACAGGACCC
TCCTCTAGGCAACCAGAGCTTACTCGTGACACAGATCAGGACCAGTCTCCAGAGTCCCACCTCT
CCCTCCACCCTGCGTTGCCAATCCGCCAGGTGATGGGTCCTCGGGATTCTAGAATAGGCCAGAA
ACAGACAGCAAACACAAACCAGTCAGAGGCCAGACGCTCTGTGATTTCCACTGCCGGTATGGGC
TCCAAGACCAAGGAAGTGGTGAACATTGAAGAGGGTAAGGACACTGAAGAGGAGGAGGAAGAGG
AAGAGGAAGAGGATGAGGAGGAAGAGGATGAGGAGGAAGAGGATGAGGAGGAGGATGAGGAGGA
AGATGAGGAAGAGGAGGAGGAGGAGGAGAGAGGAAGTGAGGAGGAAGAAACCAAGGATTTTTCT
GAGTGTGAGCACGCTCCTAGCCCGCCTTTGCATGAATTGGAGAACTCTGTGAATGAGACCACTA
TAGTGAGCCCCGGTGACTCCCAATGAGACTTCTGTAAGTCACGTGGAGTACTCCAGTCCTTTTC
TCCTCTTGTTCTATCCAAGTCGCTGGCCACCCAGCCAGCCCCTGTCCTAAGTGGGGGTCAGGAT
AACTGGGTGCTCAGGAGGAGTTCTGCTAAAGTTATCAAGGGAGCCAAAGAGACAAATGGAAATA
AATTACGTGTTGGTGGACA

hide sequence

RefSeq Acc Id:

XM_017597902 ⟹ XP_017453391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,349,030 - 97,354,827 (+)	NCBI
mRatBN7.2	11	83,844,785 - 83,850,607 (+)	NCBI
Rnor_6.0	11	88,094,244 - 88,100,220 (+)	NCBI

Sequence:

show sequence

CATAGTGATTGCTGAACCATCCAGTGTCATTCAACCACTGGGCCTCTCTGAGAAGCTGCTCTTG
GGAAGGCCAGAGGCCATGGGACCCTGAGAACCACAGATTGGGAAGAGAAAATTAAGCATTTACT
TTATGTATGAGGAATGGAGTTATTAGGGACTAGGGTTCACTGCTTTGATTCCTGCCCTACACGG
CCTAACAGTACAGCTGTTAGACAAGAAAGAAACAATGTGGCAGTGGAGGATGGACTTGCTGTGG
ATATGTTGGCAATGACAGGCTTTCTAGGATGAAGGGAGAAGGAAAACTGTAGAAAGGAGTCTGC
ATCTGTGCTGTAGGACCTGAAGAAGGAAGCAGAAAACAAATTTAATTATCCACATCATGGCAAG
GTGCCGCCACCACTCAGGTTATCTGGCTGACGACGAGGCTGCTCACGGCACCTATGTGGCTCGG
CTGCCCAAGAAGCATCTGTTGCCAGAGATGAGGCCAACTTGCAAGCTTGGGCGTGTACCACACC
TACCATCAATGAACCGATACTCAGAGCGCCAGGGCCACCAGCAAAACCTTAGGCGCCCTCGGGC
ATTTGGTGGCTTCCTGGATTTCCTCACGGAGGGTCAGGTACTGGACAGCTTGCAGACAGTCGTG
GAGCAGGCAACAGAATGTGTGGCTACCATGAAGACAGAGGCTGGAGTGCCACTGGTGGATGTAC
AAGACCGAGTGGAGGTGCCAAATAGTAGGCATCGTTCTCGAGGCAGACCCAGCATCAACACTGT
GCATCGGCACCGTGCTCGGCCCACGCTGTGTGCTGGACACCCAAACAATTACCCATCTTGCTCC
AGCTCCATGTCTGACTCCCATAGCAGCGTCACAGCTGGATGGCTGGGGTCCCGCAGCCAAGACA
GTGACCTGGGTGCCAGAGGCGTAGGCTCATTGCCACCCATGAGGGACAAACTCCTGCTTGAGAA
AAACCTCAAGAGGCTGCTACGACTGGAAAGCAAAGGGAAAGTTCTGAATCAACACTGCTCCCAG
AGGGATTCCCTGCTATGGGACTCACTGGGCAGCCAGAGCAGCAGTCAGCCGACCCGGGAACAGC
CCCTGTCTTGGTTCTCTGGGCTTCTGGCCTCCACTTCAGTCACCCCTGAAACTTCAGAGTTGGG
ACTCGGAGAACAAGAGATGATTTTCCTCAAACAAGAATTAAACAAGGAGATAAAGTCACTGCTG
AACCAGCCAACCTCCTTCAACCTGCCTACCTATTGTCCACTCAGGGAACCCCATCGTACCCTGG
ATTTCCTGTCTGAGCACCACCTCTTTCCAGCCCTGCAGCGTGTGGTCAGCCAGGCTGTAGACAA
GCTGAGCCATGCCTGCCGCCACAATGGCTTCCCCCTCTTCCCTGTTACCTCAGAGCTGTCTCCA
GTGTTTCCTGGGAACTCCGATCTTCAACCCAGCTCTAAGGCTTCCTTACCCACCGACAGGGAGG
CTAGGGGAGAGACTTGTTATTCTCCCACCTCGGCCTCCAGCCCTAAGACATCTCACAGAAAAAG
CAAGGACAGAAGGGGCTCCCCATCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAGAGC
CCCAACAAGTTTTTGAAGAAGAAGGCCCTGCCCTCCATCTCATCGGTGTCCAGCTTATCCTACA
TCTCTAACCCCTGGTTTGAGGAACTCACTAACTTCTTGGTTGAGCAGGCAGTCTCCTTGCTTAT
CTGCAAGTACAAGTTTGAGGAAAGCCTCAACAAGCAGCTTGGTTTCATCTCCTTTCCGATCACT
GAGGTTCTCATGGACATCTTTCTGGGCTTCAAGAAGGTGAAGGGTACCCACATCCGCCTATCTT
CAGACATCAACTGGACCTGTCTTCTGCGTAAGTTGGAGGAAGCAGAGATGGCGCGGCAGGCCCT
GAGACATGTCTCCAGGTCAGGAACCTCTCCACATAGCACCTCCCGTATTGTCACCTCCCACCAT
AGCACAGGACCCTCCTCTAGGCAACCAGAGCTTACTCGTGACACAGATCAGGACCAGTCTCCAG
AGTCCCACCTCTCCCTCCACCCTGCGTTGCCAATCCGCCAGGTGATGGGTCCTCGGGATTCTAG
AATAGGCCAGAAACAGACAGCAAACACAAACCAGTCAGAGGCCAGACGCTCTGTGATTTCCACT
GCCGGTATGGGCTCCAAGACCAAGGAAGTGGTGAACATTGAAGAGGGTAAGGACACTGAAGAGG
AGGAGGAAGAGGAAGAGGAAGAGGATGAGGAGGAAGAGGATGAGGAGGAAGAGGATGAGGAGGA
GGATGAGGAGGAAGATGAGGAAGAGGAGGAGGAGGAGGAGAGAGGAAGTGAGGAGGAAGAAACC
AAGGATTTTTCTGAGTGTGAGCACGCTCCTAGCCCGCCTTTGCATGAATTGGAGAACTCTGTGA
ATGAGACCACTATAGTGAGCCCCGGTGACTCCCAATGAGACTTCTGTAAGTCACGTGGAGTACT
CCAGTCCTTTTCTCCTCTTGTTCTATCCAAGTCGCTGGCCACCCAGCCAGCCCCTGTCCTAAGT
GGGGGTCAGGATAACTGGGTGCTCAGGAGGAGTTCTGCTAAAGTTATCAAGGGAGCCAAAGAGA
CAAATGGAAATAAATTACGTGTTGGTGGACA

hide sequence

RefSeq Acc Id:

XM_017597903 ⟹ XP_017453392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,348,157 - 97,354,827 (+)	NCBI
mRatBN7.2	11	83,843,921 - 83,850,607 (+)	NCBI
Rnor_6.0	11	88,093,606 - 88,100,220 (+)	NCBI

Sequence:

show sequence

GTATACCAGTCTTATGTATTCAGCCGAGGCTAGCCTTGAACTTCTGATCCTAGAGCTTCCACTT
GTCCAGTGCTGGAAGTAAAGAGGAGTCTGCATCTGTGCTGTAGGACCTGAAGAAGGAAGCAGAA
AACAAATTTAATTATCCACATCATGGCAAGGTGCCGCCACCACTCAGGTTATCTGGCTGACGAC
GAGGCTGCTCACGGCACCTATGTGGCTCGGCTGCCCAAGAAGCATCTGTTGCCAGAGATGAGGC
CAACTTGCAAGCTTGGGCGTGTACCACACCTACCATCAATGAACCGATACTCAGAGCGCCAGGG
CCACCAGCAAAACCTTAGGCGCCCTCGGGCATTTGGTGGCTTCCTGGATTTCCTCACGGAGGGT
CAGGTACTGGACAGCTTGCAGACAGTCGTGGAGCAGGCAACAGAATGTGTGGCTACCATGAAGA
CAGAGGCTGGAGTGCCACTGGTGGATGTACAAGACCGAGTGGAGGTGCCAAATAGTAGGCATCG
TTCTCGAGGCAGACCCAGCATCAACACTGTGCATCGGCACCGTGCTCGGCCCACGCTGTGTGCT
GGACACCCAAACAATTACCCATCTTGCTCCAGCTCCATGTCTGACTCCCATAGCAGCGTCACAG
CTGGATGGCTGGGGTCCCGCAGCCAAGACAGTGACCTGGGTGCCAGAGGCGTAGGCTCATTGCC
ACCCATGAGGGACAAACTCCTGCTTGAGAAAAACCTCAAGAGGCTGCTACGACTGGAAAGCAAA
GGGAAAGTTCTGAATCAACACTGCTCCCAGAGGGATTCCCTGCTATGGGACTCACTGGGCAGCC
AGAGCAGCAGTCAGCCGACCCGGGAACAGCCCCTGTCTTGGTTCTCTGGGCTTCTGGCCTCCAC
TTCAGTCACCCCTGAAACTTCAGAGTTGGGACTCGGAGAACAAGAGATGATTTTCCTCAAACAA
GAATTAAACAAGGAGATAAAGTCACTGCTGAACCAGCCAACCTCCTTCAACCTGCCTACCTATT
GTCCACTCAGGGAACCCCATCGTACCCTGGATTTCCTGTCTGAGCACCACCTCTTTCCAGCCCT
GCAGCGTGTGGTCAGCCAGGCTGTAGACAAGCTGAGCCATGCCTGCCGCCACAATGGCTTCCCC
CTCTTCCCTGTTACCTCAGAGCTGTCTCCAGTGTTTCCTGGGAACTCCGATCTTCAACCCAGCT
CTAAGGCTTCCTTACCCACCGACAGGGAGGCTAGGGGAGAGACTTGTTATTCTCCCACCTCGGC
CTCCAGCCCTAAGACATCTCACAGAAAAAGCAAGGACAGAAGGGGCTCCCCATCTAATGCAGTC
CAGATGGCTACCAGATTCAGGCTCAAGAGCCCCAACAAGTTTTTGAAGAAGAAGGCCCTGCCCT
CCATCTCATCGGTGTCCAGCTTATCCTACATCTCTAACCCCTGGTTTGAGGAACTCACTAACTT
CTTGGTTGAGCAGGCAGTCTCCTTGCTTATCTGCAAGTACAAGTTTGAGGAAAGCCTCAACAAG
CAGCTTGGTTTCATCTCCTTTCCGATCACTGAGGTTCTCATGGACATCTTTCTGGGCTTCAAGA
AGGTGAAGGGTACCCACATCCGCCTATCTTCAGACATCAACTGGACCTGTCTTCTGCGTAAGTT
GGAGGAAGCAGAGATGGCGCGGCAGGCCCTGAGACATGTCTCCAGGTCAGGAACCTCTCCACAT
AGCACCTCCCGTATTGTCACCTCCCACCATAGCACAGGACCCTCCTCTAGGCAACCAGAGCTTA
CTCGTGACACAGATCAGGACCAGTCTCCAGAGTCCCACCTCTCCCTCCACCCTGCGTTGCCAAT
CCGCCAGGTGATGGGTCCTCGGGATTCTAGAATAGGCCAGAAACAGACAGCAAACACAAACCAG
TCAGAGGCCAGACGCTCTGTGATTTCCACTGCCGGTATGGGCTCCAAGACCAAGGAAGTGGTGA
ACATTGAAGAGGGTAAGGACACTGAAGAGGAGGAGGAAGAGGAAGAGGAAGAGGATGAGGAGGA
AGAGGATGAGGAGGAAGAGGATGAGGAGGAGGATGAGGAGGAAGATGAGGAAGAGGAGGAGGAG
GAGGAGAGAGGAAGTGAGGAGGAAGAAACCAAGGATTTTTCTGAGTGTGAGCACGCTCCTAGCC
CGCCTTTGCATGAATTGGAGAACTCTGTGAATGAGACCACTATAGTGAGCCCCGGTGACTCCCA
ATGAGACTTCTGTAAGTCACGTGGAGTACTCCAGTCCTTTTCTCCTCTTGTTCTATCCAAGTCG
CTGGCCACCCAGCCAGCCCCTGTCCTAAGTGGGGGTCAGGATAACTGGGTGCTCAGGAGGAGTT
CTGCTAAAGTTATCAAGGGAGCCAAAGAGACAAATGGAAATAAATTACGTGTTGGTGGACA

hide sequence

RefSeq Acc Id:

XM_017597904 ⟹ XP_017453393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,347,348 - 97,354,827 (+)	NCBI
mRatBN7.2	11	83,843,126 - 83,850,607 (+)	NCBI
Rnor_6.0	11	88,092,794 - 88,100,220 (+)	NCBI

Sequence:

show sequence

CCGCCCTCGAACGCTGCCGAGGCCCCACCCCGACGCACACGCCTAAAAGCGGCTGCACGCCGCC
ATTGTTCTCGCCACCTAGAGAGGAGTCTGCATCTGTGCTGTAGGACCTGAAGAAGGAAGCAGAA
AACAAATTTAATTATCCACATCATGGCAAGGTGCCGCCACCACTCAGGTTATCTGGCTGACGAC
GAGGCTGCTCACGGCACCTATGTGGCTCGGCTGCCCAAGAAGCATCTGTTGCCAGAGATGAGGC
CAACTTGCAAGCTTGGGCGTGTACCACACCTACCATCAATGAACCGATACTCAGAGCGCCAGGG
CCACCAGCAAAACCTTAGGCGCCCTCGGGCATTTGGTGGCTTCCTGGATTTCCTCACGGAGGGT
CAGGTACTGGACAGCTTGCAGACAGTCGTGGAGCAGGCAACAGAATGTGTGGCTACCATGAAGA
CAGAGGCTGGAGTGCCACTGGTGGATGTACAAGACCGAGTGGAGGTGCCAAATAGTAGGCATCG
TTCTCGAGGCAGACCCAGCATCAACACTGTGCATCGGCACCGTGCTCGGCCCACGCTGTGTGCT
GGACACCCAAACAATTACCCATCTTGCTCCAGCTCCATGTCTGACTCCCATAGCAGCGTCACAG
CTGGATGGCTGGGGTCCCGCAGCCAAGACAGTGACCTGGGTGCCAGAGGCGTAGGCTCATTGCC
ACCCATGAGGGACAAACTCCTGCTTGAGAAAAACCTCAAGAGGCTGCTACGACTGGAAAGCAAA
GGGAAAGTTCTGAATCAACACTGCTCCCAGAGGGATTCCCTGCTATGGGACTCACTGGGCAGCC
AGAGCAGCAGTCAGCCGACCCGGGAACAGCCCCTGTCTTGGTTCTCTGGGCTTCTGGCCTCCAC
TTCAGTCACCCCTGAAACTTCAGAGTTGGGACTCGGAGAACAAGAGATGATTTTCCTCAAACAA
GAATTAAACAAGGAGATAAAGTCACTGCTGAACCAGCCAACCTCCTTCAACCTGCCTACCTATT
GTCCACTCAGGGAACCCCATCGTACCCTGGATTTCCTGTCTGAGCACCACCTCTTTCCAGCCCT
GCAGCGTGTGGTCAGCCAGGCTGTAGACAAGCTGAGCCATGCCTGCCGCCACAATGGCTTCCCC
CTCTTCCCTGTTACCTCAGAGCTGTCTCCAGTGTTTCCTGGGAACTCCGATCTTCAACCCAGCT
CTAAGGCTTCCTTACCCACCGACAGGGAGGCTAGGGGAGAGACTTGTTATTCTCCCACCTCGGC
CTCCAGCCCTAAGACATCTCACAGAAAAAGCAAGGACAGAAGGGGCTCCCCATCTAATGCAGTC
CAGATGGCTACCAGATTCAGGCTCAAGAGCCCCAACAAGTTTTTGAAGAAGAAGGCCCTGCCCT
CCATCTCATCGGTGTCCAGCTTATCCTACATCTCTAACCCCTGGTTTGAGGAACTCACTAACTT
CTTGGTTGAGCAGGCAGTCTCCTTGCTTATCTGCAAGTACAAGTTTGAGGAAAGCCTCAACAAG
CAGCTTGGTTTCATCTCCTTTCCGATCACTGAGGTTCTCATGGACATCTTTCTGGGCTTCAAGA
AGGTGAAGGGTACCCACATCCGCCTATCTTCAGACATCAACTGGACCTGTCTTCTGCGTAAGTT
GGAGGAAGCAGAGATGGCGCGGCAGGCCCTGAGACATGTCTCCAGGTCAGGAACCTCTCCACAT
AGCACCTCCCGTATTGTCACCTCCCACCATAGCACAGGACCCTCCTCTAGGCAACCAGAGCTTA
CTCGTGACACAGATCAGGACCAGTCTCCAGAGTCCCACCTCTCCCTCCACCCTGCGTTGCCAAT
CCGCCAGGTGATGGGTCCTCGGGATTCTAGAATAGGCCAGAAACAGACAGCAAACACAAACCAG
TCAGAGGCCAGACGCTCTGTGATTTCCACTGCCGGTATGGGCTCCAAGACCAAGGAAGTGGTGA
ACATTGAAGAGGGTAAGGACACTGAAGAGGAGGAGGAAGAGGAAGAGGAAGAGGATGAGGAGGA
AGAGGATGAGGAGGAAGAGGATGAGGAGGAGGATGAGGAGGAAGATGAGGAAGAGGAGGAGGAG
GAGGAGAGAGGAAGTGAGGAGGAAGAAACCAAGGATTTTTCTGAGTGTGAGCACGCTCCTAGCC
CGCCTTTGCATGAATTGGAGAACTCTGTGAATGAGACCACTATAGTGAGCCCCGGTGACTCCCA
ATGAGACTTCTGTAAGTCACGTGGAGTACTCCAGTCCTTTTCTCCTCTTGTTCTATCCAAGTCG
CTGGCCACCCAGCCAGCCCCTGTCCTAAGTGGGGGTCAGGATAACTGGGTGCTCAGGAGGAGTT
CTGCTAAAGTTATCAAGGGAGCCAAAGAGACAAATGGAAATAAATTACGTGTTGGTGGACA

hide sequence

RefSeq Acc Id:

XM_017597905 ⟹ XP_017453394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,347,631 - 97,354,827 (+)	NCBI
mRatBN7.2	11	83,843,289 - 83,850,607 (+)	NCBI
Rnor_6.0	11	88,093,423 - 88,100,220 (+)	NCBI

Sequence:

show sequence

TTACTCGAGAAAGCACTAGTTCATTTTTACCTTGAGTTTCAGGCAACGTTTACATCCATCACCT
CACTTTTGGACTTTGTCCAAGGAGTCTGCATCTGTGCTGTAGGACCTGAAGAAGGAAGCAGAAA
ACAAATTTAATTATCCACATCATGGCAAGGTGCCGCCACCACTCAGGTTATCTGGCTGACGACG
AGGCTGCTCACGGCACCTATGTGGCTCGGCTGCCCAAGAAGCATCTGTTGCCAGAGATGAGGCC
AACTTGCAAGCTTGGGCGTGTACCACACCTACCATCAATGAACCGATACTCAGAGCGCCAGGGC
CACCAGCAAAACCTTAGGCGCCCTCGGGCATTTGGTGGCTTCCTGGATTTCCTCACGGAGGGTC
AGGTACTGGACAGCTTGCAGACAGTCGTGGAGCAGGCAACAGAATGTGTGGCTACCATGAAGAC
AGAGGCTGGAGTGCCACTGGTGGATGTACAAGACCGAGTGGAGGTGCCAAATAGTAGGCATCGT
TCTCGAGGCAGACCCAGCATCAACACTGTGCATCGGCACCGTGCTCGGCCCACGCTGTGTGCTG
GACACCCAAACAATTACCCATCTTGCTCCAGCTCCATGTCTGACTCCCATAGCAGCGTCACAGC
TGGATGGCTGGGGTCCCGCAGCCAAGACAGTGACCTGGGTGCCAGAGGCGTAGGCTCATTGCCA
CCCATGAGGGACAAACTCCTGCTTGAGAAAAACCTCAAGAGGCTGCTACGACTGGAAAGCAAAG
GGAAAGTTCTGAATCAACACTGCTCCCAGAGGGATTCCCTGCTATGGGACTCACTGGGCAGCCA
GAGCAGCAGTCAGCCGACCCGGGAACAGCCCCTGTCTTGGTTCTCTGGGCTTCTGGCCTCCACT
TCAGTCACCCCTGAAACTTCAGAGTTGGGACTCGGAGAACAAGAGATGATTTTCCTCAAACAAG
AATTAAACAAGGAGATAAAGTCACTGCTGAACCAGCCAACCTCCTTCAACCTGCCTACCTATTG
TCCACTCAGGGAACCCCATCGTACCCTGGATTTCCTGTCTGAGCACCACCTCTTTCCAGCCCTG
CAGCGTGTGGTCAGCCAGGCTGTAGACAAGCTGAGCCATGCCTGCCGCCACAATGGCTTCCCCC
TCTTCCCTGTTACCTCAGAGCTGTCTCCAGTGTTTCCTGGGAACTCCGATCTTCAACCCAGCTC
TAAGGCTTCCTTACCCACCGACAGGGAGGCTAGGGGAGAGACTTGTTATTCTCCCACCTCGGCC
TCCAGCCCTAAGACATCTCACAGAAAAAGCAAGGACAGAAGGGGCTCCCCATCTAATGCAGTCC
AGATGGCTACCAGATTCAGGCTCAAGAGCCCCAACAAGTTTTTGAAGAAGAAGGCCCTGCCCTC
CATCTCATCGGTGTCCAGCTTATCCTACATCTCTAACCCCTGGTTTGAGGAACTCACTAACTTC
TTGGTTGAGCAGGCAGTCTCCTTGCTTATCTGCAAGTACAAGTTTGAGGAAAGCCTCAACAAGC
AGCTTGGTTTCATCTCCTTTCCGATCACTGAGGTTCTCATGGACATCTTTCTGGGCTTCAAGAA
GGTGAAGGGTACCCACATCCGCCTATCTTCAGACATCAACTGGACCTGTCTTCTGCGTAAGTTG
GAGGAAGCAGAGATGGCGCGGCAGGCCCTGAGACATGTCTCCAGGTCAGGAACCTCTCCACATA
GCACCTCCCGTATTGTCACCTCCCACCATAGCACAGGACCCTCCTCTAGGCAACCAGAGCTTAC
TCGTGACACAGATCAGGACCAGTCTCCAGAGTCCCACCTCTCCCTCCACCCTGCGTTGCCAATC
CGCCAGGTGATGGGTCCTCGGGATTCTAGAATAGGCCAGAAACAGACAGCAAACACAAACCAGT
CAGAGGCCAGACGCTCTGTGATTTCCACTGCCGGTATGGGCTCCAAGACCAAGGAAGTGGTGAA
CATTGAAGAGGGTAAGGACACTGAAGAGGAGGAGGAAGAGGAAGAGGAAGAGGATGAGGAGGAA
GAGGATGAGGAGGAAGAGGATGAGGAGGAGGATGAGGAGGAAGATGAGGAAGAGGAGGAGGAGG
AGGAGAGAGGAAGTGAGGAGGAAGAAACCAAGGATTTTTCTGAGTGTGAGCACGCTCCTAGCCC
GCCTTTGCATGAATTGGAGAACTCTGTGAATGAGACCACTATAGTGAGCCCCGGTGACTCCCAA
TGAGACTTCTGTAAGTCACGTGGAGTACTCCAGTCCTTTTCTCCTCTTGTTCTATCCAAGTCGC
TGGCCACCCAGCCAGCCCCTGTCCTAAGTGGGGGTCAGGATAACTGGGTGCTCAGGAGGAGTTC
TGCTAAAGTTATCAAGGGAGCCAAAGAGACAAATGGAAATAAATTACGTGTTGGTGGACA

hide sequence

RefSeq Acc Id:

XM_039088066 ⟹ XP_038943994

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,346,927 - 97,354,827 (+)	NCBI
mRatBN7.2	11	83,842,707 - 83,850,607 (+)	NCBI

RefSeq Acc Id:

XM_063270321 ⟹ XP_063126391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,347,516 - 97,354,827 (+)	NCBI

RefSeq Acc Id:

XM_063270322 ⟹ XP_063126392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,349,755 - 97,354,827 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019911	(Get FASTA)	NCBI Sequence Viewer
	NP_001424647	(Get FASTA)	NCBI Sequence Viewer
	NP_001424648	(Get FASTA)	NCBI Sequence Viewer
	XP_017453390	(Get FASTA)	NCBI Sequence Viewer
	XP_017453391	(Get FASTA)	NCBI Sequence Viewer
	XP_017453392	(Get FASTA)	NCBI Sequence Viewer
	XP_017453393	(Get FASTA)	NCBI Sequence Viewer
	XP_017453394	(Get FASTA)	NCBI Sequence Viewer
	XP_038943994	(Get FASTA)	NCBI Sequence Viewer
	XP_063126391	(Get FASTA)	NCBI Sequence Viewer
	XP_063126392	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97459	(Get FASTA)	NCBI Sequence Viewer
	EDL77878	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040746
	ENSRNOP00000102138
GenBank Protein	Q4V8B5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001019911 ⟸ NM_001024740

- UniProtKB:

Q4V8B5 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVPHLPSMNRYSERQGHQQNLRR
PRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEAGVPLVDVQDRVEVPNSRHRSRGRPSI
NTVHRHRARPTLCAGHPNNYPSCSSSMSDSHSSVTAGWLGSRSQDSDLGARGVGSLPPMRDKLL
LEKNLKRLLRLESKGKVLNQHCSQRDSLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETS
ELGLGEQEMIFLKQELNKEIKSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQA
VDKLSHACRHNGFPLFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSH
RKSKDRRGSPSNAVQMATRFRLKVTPTEVSNVPIPSSQCMLKSPNSDLKLQKQTTASNHNHIPQ
PRHGLHLTLPAPGITVEVASCQGQLRGQVQHSLATPCHLHSHFPFPVFSPFLPLGKSFSTSPPT
LCPEVSSRAGLEVLEGHLKGRGCFTHHF

hide sequence

RefSeq Acc Id:	XP_017453393 ⟸ XM_017597904
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QMP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVPHLPSMNRYSERQGHQQNLRR PRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEAGVPLVDVQDRVEVPNSRHRSRGRPSI NTVHRHRARPTLCAGHPNNYPSCSSSMSDSHSSVTAGWLGSRSQDSDLGARGVGSLPPMRDKLL LEKNLKRLLRLESKGKVLNQHCSQRDSLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETS ELGLGEQEMIFLKQELNKEIKSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQA VDKLSHACRHNGFPLFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSH RKSKDRRGSPSNAVQMATRFRLKSPNKFLKKKALPSISSVSSLSYISNPWFEELTNFLVEQAVS LLICKYKFEESLNKQLGFISFPITEVLMDIFLGFKKVKGTHIRLSSDINWTCLLRKLEEAEMAR QALRHVSRSGTSPHSTSRIVTSHHSTGPSSRQPELTRDTDQDQSPESHLSLHPALPIRQVMGPR DSRIGQKQTANTNQSEARRSVISTAGMGSKTKEVVNIEEGKDTEEEEEEEEEEDEEEEDEEEED EEEDEEEDEEEEEEEERGSEEEETKDFSECEHAPSPPLHELENSVNETTIVSPGDSQ hide sequence

RefSeq Acc Id:	XP_017453394 ⟸ XM_017597905
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QMP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVPHLPSMNRYSERQGHQQNLRR PRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEAGVPLVDVQDRVEVPNSRHRSRGRPSI NTVHRHRARPTLCAGHPNNYPSCSSSMSDSHSSVTAGWLGSRSQDSDLGARGVGSLPPMRDKLL LEKNLKRLLRLESKGKVLNQHCSQRDSLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETS ELGLGEQEMIFLKQELNKEIKSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQA VDKLSHACRHNGFPLFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSH RKSKDRRGSPSNAVQMATRFRLKSPNKFLKKKALPSISSVSSLSYISNPWFEELTNFLVEQAVS LLICKYKFEESLNKQLGFISFPITEVLMDIFLGFKKVKGTHIRLSSDINWTCLLRKLEEAEMAR QALRHVSRSGTSPHSTSRIVTSHHSTGPSSRQPELTRDTDQDQSPESHLSLHPALPIRQVMGPR DSRIGQKQTANTNQSEARRSVISTAGMGSKTKEVVNIEEGKDTEEEEEEEEEEDEEEEDEEEED EEEDEEEDEEEEEEEERGSEEEETKDFSECEHAPSPPLHELENSVNETTIVSPGDSQ hide sequence

RefSeq Acc Id:	XP_017453392 ⟸ XM_017597903
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QMP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVPHLPSMNRYSERQGHQQNLRR PRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEAGVPLVDVQDRVEVPNSRHRSRGRPSI NTVHRHRARPTLCAGHPNNYPSCSSSMSDSHSSVTAGWLGSRSQDSDLGARGVGSLPPMRDKLL LEKNLKRLLRLESKGKVLNQHCSQRDSLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETS ELGLGEQEMIFLKQELNKEIKSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQA VDKLSHACRHNGFPLFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSH RKSKDRRGSPSNAVQMATRFRLKSPNKFLKKKALPSISSVSSLSYISNPWFEELTNFLVEQAVS LLICKYKFEESLNKQLGFISFPITEVLMDIFLGFKKVKGTHIRLSSDINWTCLLRKLEEAEMAR QALRHVSRSGTSPHSTSRIVTSHHSTGPSSRQPELTRDTDQDQSPESHLSLHPALPIRQVMGPR DSRIGQKQTANTNQSEARRSVISTAGMGSKTKEVVNIEEGKDTEEEEEEEEEEDEEEEDEEEED EEEDEEEDEEEEEEEERGSEEEETKDFSECEHAPSPPLHELENSVNETTIVSPGDSQ hide sequence

RefSeq Acc Id:	XP_017453391 ⟸ XM_017597902
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QMP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVPHLPSMNRYSERQGHQQNLRR PRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEAGVPLVDVQDRVEVPNSRHRSRGRPSI NTVHRHRARPTLCAGHPNNYPSCSSSMSDSHSSVTAGWLGSRSQDSDLGARGVGSLPPMRDKLL LEKNLKRLLRLESKGKVLNQHCSQRDSLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETS ELGLGEQEMIFLKQELNKEIKSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQA VDKLSHACRHNGFPLFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSH RKSKDRRGSPSNAVQMATRFRLKSPNKFLKKKALPSISSVSSLSYISNPWFEELTNFLVEQAVS LLICKYKFEESLNKQLGFISFPITEVLMDIFLGFKKVKGTHIRLSSDINWTCLLRKLEEAEMAR QALRHVSRSGTSPHSTSRIVTSHHSTGPSSRQPELTRDTDQDQSPESHLSLHPALPIRQVMGPR DSRIGQKQTANTNQSEARRSVISTAGMGSKTKEVVNIEEGKDTEEEEEEEEEEDEEEEDEEEED EEEDEEEDEEEEEEEERGSEEEETKDFSECEHAPSPPLHELENSVNETTIVSPGDSQ hide sequence

RefSeq Acc Id:

XP_017453390 ⟸ XM_017597901

- Peptide Label:

isoform X1

- Sequence:

show sequence

MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVPHLPSMNRYSERQGHQQNLRR
PRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEAGVPLVDVQDRVEVPNSRHRSRGRPSI
NTVHRHRARPTLCAGHPNNYPSCSSSMSDSHSSVTAGWLGSRSQDSDLGARGVGSLPPMRDKLL
LEKNLKRLLRLESKGKVLNQHCSQRDSLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETS
ELGLGEQEMIFLKQELNKEIKSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQA
VDKLSHACRHNGFPLFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSH
RKSKDRRGSPSNAVQMATRFRLKSPNKFLKKKALPSISSVSSLSYISNPWFEELTNFLVEQAVS
LLICKYKFEESLNKQLGFISFPITEVLMDIFLGFKKVKGTHIRLSSDINWTCLLRKLEEAEMAR
QALRHVSRSGTSPHSTSRIVTSHHSTGPSSRQPELTRDTDQDQSPESHLSLHPALPIRQVMGPR
DSRIGQKQTANTNQSEARRSVISTAGMGSKTKEVVNIEEGKDTEEEEEEEEEEDEEEEDEEEED
EEEDEEEDEEEEEEEERGSEEEETKDFSECEHAPSPPLHELENSVNETTIVSPGDSQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000040746 ⟸ ENSRNOT00000041557

RefSeq Acc Id:	XP_038943994 ⟸ XM_039088066
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063126391 ⟸ XM_063270321
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QMP9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126392 ⟸ XM_063270322
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QMP9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102138 ⟸ ENSRNOT00000125813

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V8B5-F1-model_v2	AlphaFold	Q4V8B5	1-540	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698335

Promoter ID:

EPDNEW_R8860

Type:

multiple initiation site

Name:

Ccdc116_1

Description:

coiled-coil domain containing 116

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	88,095,101 - 88,095,161	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310080	AgrOrtholog
BioCyc Gene	G2FUF-20576	BioCyc
Ensembl Genes	ENSRNOG00000001860	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000041557	ENTREZGENE
	ENSRNOT00000125813	ENTREZGENE
IMAGE_CLONE	IMAGE:7457223	IMAGE-MGC_LOAD
InterPro	DUF4702	UniProtKB/Swiss-Prot
KEGG Report	rno:287936	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114521	IMAGE-MGC_LOAD
NCBI Gene	287936	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 116	UniProtKB/Swiss-Prot
	PTHR36861	UniProtKB/Swiss-Prot
Pfam	DUF4702	UniProtKB/Swiss-Prot
PhenoGen	Ccdc116	PhenoGen
RatGTEx	ENSRNOG00000001860	RatGTEx
UniProt	A0A8L2QMP9	ENTREZGENE, UniProtKB/TrEMBL
	CC116_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2007-03-26	Ccdc116	coiled-coil domain containing 116	Sdf2l1	stromal cell-derived factor 2-like 1	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED
2005-12-06	Sdf2l1	stromal cell-derived factor 2-like 1	Sdf2l1_predicted	stromal cell-derived factor 2-like 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Sdf2l1_predicted	stromal cell-derived factor 2-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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