Cops7a (COP9 signalosome subunit 7A) - Rat Genome Database

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Gene: Cops7a (COP9 signalosome subunit 7A) Rattus norvegicus
Analyze
Symbol: Cops7a
Name: COP9 signalosome subunit 7A
RGD ID: 1310070
Description: Predicted to be involved in protein deneddylation. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of COP9 signalosome. Orthologous to human COPS7A (COP9 signalosome subunit 7A); INTERACTS WITH 2,4,6-trinitrotoluene; 2,6-dinitrotoluene; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: COP9 (constitutive photomorphogenic) homolog, subunit 7a; COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana); COP9 complex subunit 7a; COP9 constitutive photomorphogenic homolog subunit 7A; COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis); COP9 signalosome complex subunit 7a; LOC312710
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,452,878 - 159,478,878 (-)NCBIGRCr8
mRatBN7.24157,766,626 - 157,792,632 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,766,588 - 157,773,948 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,995,589 - 164,002,939 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,778,517 - 159,785,867 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,414,174 - 158,421,540 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,479,549 - 157,486,944 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,479,549 - 157,486,914 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,497,368 - 224,504,771 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,085,411 - 161,092,776 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,330,351 - 161,363,055 (-)NCBI
Celera4146,503,939 - 146,511,302 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
COP9 signalosome  (IBA,ISO)
cytoplasm  (ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:18850735   PMID:19141280  


Genomics

Comparative Map Data
Cops7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,452,878 - 159,478,878 (-)NCBIGRCr8
mRatBN7.24157,766,626 - 157,792,632 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,766,588 - 157,773,948 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,995,589 - 164,002,939 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,778,517 - 159,785,867 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,414,174 - 158,421,540 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,479,549 - 157,486,944 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,479,549 - 157,486,914 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,497,368 - 224,504,771 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,085,411 - 161,092,776 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,330,351 - 161,363,055 (-)NCBI
Celera4146,503,939 - 146,511,302 (-)NCBICelera
Cytogenetic Map4q42NCBI
COPS7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,724,046 - 6,731,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,724,014 - 6,731,875 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,833,212 - 6,841,031 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,703,482 - 6,711,292 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,703,481 - 6,711,289NCBI
Celera128,450,370 - 8,458,265 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,686,493 - 6,694,535 (+)NCBIHuRef
CHM1_1126,832,136 - 6,840,030 (+)NCBICHM1_1
T2T-CHM13v2.0126,734,396 - 6,742,219 (+)NCBIT2T-CHM13v2.0
Cops7a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,935,413 - 124,974,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,935,376 - 124,942,501 (-)EnsemblGRCm39 Ensembl
GRCm386124,958,445 - 124,997,903 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,958,413 - 124,965,538 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,908,429 - 124,915,547 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,924,435 - 124,930,985 (-)NCBIMGSCv36mm8
Celera6126,634,706 - 126,641,820 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Cops7a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,337,117 - 4,343,722 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,337,117 - 4,343,640 (+)NCBIChiLan1.0ChiLan1.0
COPS7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,286,318 - 12,295,271 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,284,103 - 12,292,039 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,856,119 - 6,863,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,770,628 - 6,778,199 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,770,675 - 6,778,199 (+)Ensemblpanpan1.1panPan2
COPS7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,301,608 - 38,313,801 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,307,316 - 38,313,166 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,303,125 - 8,317,555 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,651,983 - 38,666,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,659,220 - 38,666,374 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,525,898 - 38,540,312 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,567,187 - 38,581,617 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,782,105 - 7,796,544 (+)NCBIUU_Cfam_GSD_1.0
Cops7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,413,441 - 102,419,651 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,080,696 - 1,087,062 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,081,070 - 1,087,151 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPS7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,957,064 - 63,977,424 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,970,543 - 63,977,470 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,405,476 - 66,412,383 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COPS7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,754,671 - 6,762,169 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,754,688 - 6,762,835 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,462,580 - 1,470,151 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cops7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,421,910 - 3,428,823 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,422,033 - 3,427,610 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cops7a
187 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:154
Interacting mature miRNAs:172
Transcripts:ENSRNOT00000022874, ENSRNOT00000038281
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
1581574Eae20Experimental allergic encephalomyelitis QTL 207.8nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4153031106158841762Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4157680158158841762Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

Markers in Region
WI-8013  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,766,990 - 157,767,323 (+)MAPPERmRatBN7.2
Rnor_6.04157,479,914 - 157,480,246NCBIRnor6.0
Rnor_5.04224,497,733 - 224,498,065UniSTSRnor5.0
RGSC_v3.44161,085,776 - 161,086,108UniSTSRGSC3.4
Celera4146,504,304 - 146,504,636UniSTS
Cytogenetic Map4q42UniSTS
RH127709  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,767,314 - 157,767,521 (+)MAPPERmRatBN7.2
Rnor_6.04157,480,238 - 157,480,444NCBIRnor6.0
Rnor_5.04224,498,057 - 224,498,263UniSTSRnor5.0
RGSC_v3.44161,086,100 - 161,086,306UniSTSRGSC3.4
Celera4146,504,628 - 146,504,834UniSTS
RH 3.4 Map41004.3UniSTS
Cytogenetic Map4q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001047098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB259153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI603423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI296165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB326021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV719333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM037577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM059742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM122308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022874   ⟹   ENSRNOP00000022874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4157,766,626 - 157,773,801 (-)Ensembl
Rnor_6.0 Ensembl4157,479,549 - 157,486,914 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000038281   ⟹   ENSRNOP00000031800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4157,766,984 - 157,773,943 (-)Ensembl
Rnor_6.0 Ensembl4157,479,909 - 157,486,844 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098859   ⟹   ENSRNOP00000092114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4157,767,748 - 157,773,948 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100144   ⟹   ENSRNOP00000087455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4157,766,588 - 157,773,933 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101137   ⟹   ENSRNOP00000081985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4157,766,634 - 157,773,948 (-)Ensembl
RefSeq Acc Id: NM_001047098   ⟹   NP_001040563
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,452,878 - 159,460,243 (-)NCBI
mRatBN7.24157,766,626 - 157,773,993 (-)NCBI
Rnor_6.04157,479,549 - 157,486,914 (-)NCBI
Rnor_5.04224,497,368 - 224,504,771 (-)NCBI
RGSC_v3.44161,085,411 - 161,092,776 (-)RGD
Celera4146,503,939 - 146,511,302 (-)RGD
Sequence:
RefSeq Acc Id: NM_001164091   ⟹   NP_001157563
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,453,222 - 159,460,173 (-)NCBI
mRatBN7.24157,766,970 - 157,773,923 (-)NCBI
Rnor_6.04157,479,893 - 157,486,844 (-)NCBI
Rnor_5.04224,497,368 - 224,504,771 (-)NCBI
RGSC_v3.44161,085,411 - 161,092,776 (-)RGD
Celera4146,504,283 - 146,511,232 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237368   ⟹   XP_006237430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,452,878 - 159,478,878 (-)NCBI
mRatBN7.24157,766,626 - 157,792,632 (-)NCBI
Rnor_6.04157,479,549 - 157,486,944 (-)NCBI
Rnor_5.04224,497,368 - 224,504,771 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107674   ⟹   XP_038963602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,452,878 - 159,460,027 (-)NCBI
mRatBN7.24157,766,626 - 157,773,774 (-)NCBI
RefSeq Acc Id: XM_039107675   ⟹   XP_038963603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,453,231 - 159,460,030 (-)NCBI
mRatBN7.24157,766,979 - 157,773,771 (-)NCBI
RefSeq Acc Id: XM_039107676   ⟹   XP_038963604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,452,878 - 159,478,878 (-)NCBI
mRatBN7.24157,766,626 - 157,792,632 (-)NCBI
RefSeq Acc Id: XM_039107678   ⟹   XP_038963606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,453,231 - 159,478,878 (-)NCBI
mRatBN7.24157,766,979 - 157,792,632 (-)NCBI
RefSeq Acc Id: XM_063286139   ⟹   XP_063142209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,452,878 - 159,460,918 (-)NCBI
RefSeq Acc Id: XM_063286140   ⟹   XP_063142210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,453,231 - 159,478,878 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001040563   ⟸   NM_001047098
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZU93 (UniProtKB/TrEMBL),   G3V8Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157563   ⟸   NM_001164091
- Peptide Label: isoform 1
- UniProtKB: A6ILN5 (UniProtKB/TrEMBL),   A0A8I6GK17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237430   ⟸   XM_006237368
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZU93 (UniProtKB/TrEMBL),   G3V8Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000031800   ⟸   ENSRNOT00000038281
RefSeq Acc Id: ENSRNOP00000022874   ⟸   ENSRNOT00000022874
RefSeq Acc Id: XP_038963604   ⟸   XM_039107676
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZU93 (UniProtKB/TrEMBL),   G3V8Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963602   ⟸   XM_039107674
- Peptide Label: isoform X1
- UniProtKB: F1MAA2 (UniProtKB/TrEMBL),   G3V8Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963606   ⟸   XM_039107678
- Peptide Label: isoform X4
- UniProtKB: A6ILN5 (UniProtKB/TrEMBL),   A0A8I6GK17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963603   ⟸   XM_039107675
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GK17 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000081985   ⟸   ENSRNOT00000101137
RefSeq Acc Id: ENSRNOP00000087455   ⟸   ENSRNOT00000100144
RefSeq Acc Id: ENSRNOP00000092114   ⟸   ENSRNOT00000098859
RefSeq Acc Id: XP_063142209   ⟸   XM_063286139
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZU93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142210   ⟸   XM_063286140
- Peptide Label: isoform X4
- UniProtKB: A6ILN5 (UniProtKB/TrEMBL)
Protein Domains
PCI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAA2-F1-model_v2 AlphaFold F1MAA2 1-277 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693398
Promoter ID:EPDNEW_R3923
Type:initiation region
Name:Cops7a_1
Description:COP9 signalosome subunit 7A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,486,859 - 157,486,919EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310070 AgrOrtholog
BioCyc Gene G2FUF-43050 BioCyc
Ensembl Genes ENSRNOG00000016778 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022874.9 UniProtKB/TrEMBL
  ENSRNOT00000038281 ENTREZGENE
  ENSRNOT00000038281.5 UniProtKB/TrEMBL
  ENSRNOT00000098859.1 UniProtKB/TrEMBL
  ENSRNOT00000100144.1 UniProtKB/TrEMBL
  ENSRNOT00000101137 ENTREZGENE
  ENSRNOT00000101137.1 UniProtKB/TrEMBL
InterPro COPS7/eIF3m UniProtKB/TrEMBL
  CSN7_helixI UniProtKB/TrEMBL
  PCI_dom UniProtKB/TrEMBL
KEGG Report rno:312710 UniProtKB/TrEMBL
NCBI Gene 312710 ENTREZGENE
PANTHER PTHR15350 UniProtKB/TrEMBL
  PTHR15350:SF7 UniProtKB/TrEMBL
Pfam CSN7a_helixI UniProtKB/TrEMBL
  PCI UniProtKB/TrEMBL
PhenoGen Cops7a PhenoGen
PROSITE PCI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016778 RatGTEx
SMART PINT UniProtKB/TrEMBL
UniProt A0A8I5ZU93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5V6_RAT UniProtKB/TrEMBL
  A0A8I6GK17 ENTREZGENE, UniProtKB/TrEMBL
  A6ILN5 ENTREZGENE, UniProtKB/TrEMBL
  F1MAA2 ENTREZGENE, UniProtKB/TrEMBL
  G3V8Z9 ENTREZGENE, UniProtKB/TrEMBL
  Q1JU69_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-20 Cops7a  COP9 signalosome subunit 7A  Cops7a  COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Cops7a  COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)  Cops7a  COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cops7a  COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)   Cops7a_predicted  COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cops7a_predicted  COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana) (predicted)      Symbol and Name status set to approved 70820 APPROVED