Supt16h (SPT16 homolog, facilitates chromatin remodeling subunit) - Rat Genome Database

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Gene: Supt16h (SPT16 homolog, facilitates chromatin remodeling subunit) Rattus norvegicus
Analyze
Symbol: Supt16h
Name: SPT16 homolog, facilitates chromatin remodeling subunit
RGD ID: 1310032
Description: Predicted to enable nucleosome binding activity. Predicted to be involved in nucleosome disassembly and transcription elongation by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of FACT complex. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with dysmorphic facies and thin corpus callosum. Orthologous to human SUPT16H (SPT16 homolog, facilitates chromatin remodeling subunit); PARTICIPATES IN histone modification pathway; RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: FACT complex subunit SPT16; LOC305851; suppressor of Ty 16 homolog; suppressor of Ty 16 homolog (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,341,196 - 27,378,314 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1527,341,196 - 27,378,314 (-)EnsemblGRCr8
mRatBN7.21524,867,697 - 24,904,818 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,866,489 - 24,904,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1527,639,907 - 27,677,046 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,594,508 - 28,631,626 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,847,446 - 26,884,565 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,574,841 - 28,611,959 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,575,480 - 28,611,946 (-)Ensemblrn6Rnor6.0
Rnor_5.01532,385,107 - 32,422,226 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41527,604,676 - 27,641,794 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1525,171,514 - 25,208,618 (-)NCBICelera
RGSC_v3.11527,620,377 - 27,657,927 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
epoxiconazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
inulin  (ISO)
ivermectin  (ISO)
mercury dichloride  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
Monobutylphthalate  (ISO)
nitrates  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
FACT complex  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Histone chaperones in nucleosome assembly and human disease. Burgess RJ and Zhang Z, Nat Struct Mol Biol. 2013 Jan;20(1):14-22. doi: 10.1038/nsmb.2461.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Control of transcriptional elongation. Kwak H and Lis JT, Annu Rev Genet. 2013;47:483-508. doi: 10.1146/annurev-genet-110711-155440. Epub 2013 Sep 11.
4. Histone H3 lysine 9 and H4 lysine 20 trimethylation and the expression of Suv4-20h2 and Suv-39h1 histone methyltransferases in hepatocarcinogenesis induced by methyl deficiency in rats. Pogribny IP, etal., Carcinogenesis. 2006 Jun;27(6):1180-6. Epub 2006 Feb 23.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization. Winkler DD and Luger K, J Biol Chem. 2011 May 27;286(21):18369-74. doi: 10.1074/jbc.R110.180778. Epub 2011 Mar 24.
Additional References at PubMed
PMID:22658674   PMID:22681889   PMID:24625528  


Genomics

Comparative Map Data
Supt16h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,341,196 - 27,378,314 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1527,341,196 - 27,378,314 (-)EnsemblGRCr8
mRatBN7.21524,867,697 - 24,904,818 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,866,489 - 24,904,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1527,639,907 - 27,677,046 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,594,508 - 28,631,626 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,847,446 - 26,884,565 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,574,841 - 28,611,959 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,575,480 - 28,611,946 (-)Ensemblrn6Rnor6.0
Rnor_5.01532,385,107 - 32,422,226 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41527,604,676 - 27,641,794 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1525,171,514 - 25,208,618 (-)NCBICelera
RGSC_v3.11527,620,377 - 27,657,927 (-)NCBI
Cytogenetic Map15p14NCBI
SUPT16H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,351,476 - 21,384,019 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1421,351,472 - 21,384,042 (-)Ensemblhg38GRCh38
GRCh371421,819,635 - 21,852,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,889,475 - 20,922,265 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341420,889,477 - 20,922,265NCBI
Celera141,685,113 - 1,717,921 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,939,467 - 1,972,279 (-)NCBIHuRef
CHM1_11421,821,298 - 21,854,094 (-)NCBICHM1_1
T2T-CHM13v2.01415,548,935 - 15,581,495 (-)NCBIT2T-CHM13v2.0
Supt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,397,876 - 52,434,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,397,871 - 52,434,873 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381452,160,419 - 52,197,239 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,160,414 - 52,197,416 (-)Ensemblmm10GRCm38
MGSCv371452,780,094 - 52,816,914 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361451,082,370 - 51,119,152 (-)NCBIMGSCv36mm8
Celera1449,144,174 - 49,181,205 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1426.83NCBI
Supt16h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555502,074,941 - 2,114,528 (-)Ensembl
ChiLan1.0NW_0049555502,074,646 - 2,114,634 (-)NCBIChiLan1.0ChiLan1.0
SUPT16H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,806,792 - 22,840,192 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11422,023,279 - 22,056,679 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,169,169 - 2,201,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11420,247,321 - 20,280,074 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1420,247,325 - 20,280,074 (-)EnsemblpanPan2panpan1.1
SUPT16H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,387,624 - 18,429,553 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1518,388,512 - 18,429,553 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1518,871,946 - 18,914,215 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01518,646,417 - 18,688,404 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,646,415 - 18,688,499 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11518,328,676 - 18,370,778 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01518,384,688 - 18,426,630 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01518,513,507 - 18,555,450 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Supt16h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864032,602,319 - 32,635,984 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936880508,244 - 545,369 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936880511,699 - 545,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT16H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl777,781,316 - 77,814,505 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1777,780,968 - 77,814,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,173,111 - 83,206,010 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUPT16H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,822,520 - 21,855,552 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,822,393 - 21,855,923 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605924,575,299 - 24,608,045 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Supt16h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,367,325 - 7,410,823 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248257,366,448 - 7,410,847 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Supt16h
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11271,693,128 - 71,730,033 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Supt16h
403 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:337
Count of miRNA genes:199
Interacting mature miRNAs:218
Transcripts:ENSRNOT00000016288
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
WI-14045  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21524,905,800 - 24,905,927 (+)MAPPERmRatBN7.2
Rnor_6.01528,612,942 - 28,613,068NCBIRnor6.0
Rnor_5.01532,423,209 - 32,423,335UniSTSRnor5.0
RGSC_v3.41527,642,777 - 27,642,903UniSTSRGSC3.4
Celera1525,209,601 - 25,209,727UniSTS
Cytogenetic Map15p14UniSTS
AA997586  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21524,867,766 - 24,867,974 (+)MAPPERmRatBN7.2
Rnor_6.01528,574,911 - 28,575,118NCBIRnor6.0
Rnor_5.01532,385,177 - 32,385,384UniSTSRnor5.0
RGSC_v3.41527,604,746 - 27,604,953UniSTSRGSC3.4
Celera1525,171,584 - 25,171,791UniSTS
Cytogenetic Map15p14UniSTS
RH138387  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21524,867,402 - 24,867,585 (+)MAPPERmRatBN7.2
Rnor_6.01528,574,547 - 28,574,729NCBIRnor6.0
Rnor_5.01532,384,813 - 32,384,995UniSTSRnor5.0
RGSC_v3.41527,604,382 - 27,604,564UniSTSRGSC3.4
Celera1525,171,220 - 25,171,402UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016288   ⟹   ENSRNOP00000016288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1527,341,196 - 27,378,314 (-)Ensembl
mRatBN7.2 Ensembl1524,868,520 - 24,904,827 (-)Ensembl
Rnor_6.0 Ensembl1528,575,480 - 28,611,946 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111950   ⟹   ENSRNOP00000076424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,866,489 - 24,904,846 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116098   ⟹   ENSRNOP00000091739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1527,341,196 - 27,378,314 (-)Ensembl
mRatBN7.2 Ensembl1524,867,715 - 24,904,846 (-)Ensembl
RefSeq Acc Id: NM_001107261   ⟹   NP_001100731
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,341,196 - 27,378,314 (-)NCBI
mRatBN7.21524,867,697 - 24,904,818 (-)NCBI
Rnor_6.01528,574,841 - 28,611,959 (-)NCBI
Rnor_5.01532,385,107 - 32,422,226 (-)NCBI
RGSC_v3.41527,604,676 - 27,641,794 (-)RGD
Celera1525,171,514 - 25,208,618 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100731 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88471 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016288
  ENSRNOP00000016288.5
  ENSRNOP00000091739.1
RefSeq Acc Id: NP_001100731   ⟸   NM_001107261
- UniProtKB: A0A8I5ZJ57 (UniProtKB/TrEMBL),   A6KEG6 (UniProtKB/TrEMBL),   A0A8I6GJV6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016288   ⟸   ENSRNOT00000016288
Ensembl Acc Id: ENSRNOP00000091739   ⟸   ENSRNOT00000116098
Ensembl Acc Id: ENSRNOP00000076424   ⟸   ENSRNOT00000111950
Protein Domains
FACT complex subunit SPT16 middle   FACT complex subunit Spt16 N-terminal lobe   Histone chaperone RTT106/FACT complex subunit SPT16-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4J0-F1-model_v2 AlphaFold D4A4J0 1-1047 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699636
Promoter ID:EPDNEW_R10160
Type:multiple initiation site
Name:Supt16h_1
Description:SPT16 homolog, facilitates chromatin remodeling subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01528,611,985 - 28,612,045EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310032 AgrOrtholog
BioCyc Gene G2FUF-13985 BioCyc
Ensembl Genes ENSRNOG00000011953 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016288 ENTREZGENE
  ENSRNOT00000016288.7 UniProtKB/TrEMBL
  ENSRNOT00000116098.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.150 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.40.350.10 UniProtKB/TrEMBL
  3.90.230.10 UniProtKB/TrEMBL
  FACT complex subunit Spt16p/Cdc68p UniProtKB/TrEMBL
InterPro Creatin/AminoP/Spt16_NTD UniProtKB/TrEMBL
  Creatinase/aminopeptidase-like UniProtKB/TrEMBL
  DUF1747_euk UniProtKB/TrEMBL
  FACT-Spt16_Nlobe UniProtKB/TrEMBL
  Fact-SPT16_PH UniProtKB/TrEMBL
  FACT_Spt16p UniProtKB/TrEMBL
  Pept_M24_structural-domain UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  SPT16 UniProtKB/TrEMBL
  Spt16 UniProtKB/TrEMBL
  SPT16_C UniProtKB/TrEMBL
KEGG Report rno:305851 UniProtKB/TrEMBL
NCBI Gene 305851 ENTREZGENE
PANTHER FACT COMPLEX SUBUNIT SPT16 UniProtKB/TrEMBL
  PTHR13980 UniProtKB/TrEMBL
Pfam FACT-Spt16_Nlob UniProtKB/TrEMBL
  Peptidase_M24 UniProtKB/TrEMBL
  PH_SPT16 UniProtKB/TrEMBL
  Rtt106 UniProtKB/TrEMBL
  SPT16 UniProtKB/TrEMBL
  SPT16_C UniProtKB/TrEMBL
PhenoGen Supt16h PhenoGen
RatGTEx ENSRNOG00000011953 RatGTEx
SMART FACT-Spt16_Nlob UniProtKB/TrEMBL
  Rtt106 UniProtKB/TrEMBL
  SPT16 UniProtKB/TrEMBL
Superfamily-SCOP Peptidase_M24_cat_core UniProtKB/TrEMBL
UniProt A0A8I5ZJ57 ENTREZGENE
  A0A8I6GJV6 ENTREZGENE, UniProtKB/TrEMBL
  A6KEG6 ENTREZGENE, UniProtKB/TrEMBL
  D4A4J0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-01 Supt16h  SPT16 homolog, facilitates chromatin remodeling subunit  Supt16h  suppressor of Ty 16 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Supt16h  suppressor of Ty 16 homolog (S. cerevisiae)   Supt16h_predicted  suppressor of Ty 16 homolog (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Supt16h_predicted  suppressor of Ty 16 homolog (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED