Gsx1 (GS homeobox 1) - Rat Genome Database

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Gene: Gsx1 (GS homeobox 1) Rattus norvegicus
Analyze
Symbol: Gsx1
Name: GS homeobox 1
RGD ID: 1310020
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in brain development; neuron differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within nervous system development. Predicted to be active in nucleus. Orthologous to human GSX1 (GS homeobox 1); INTERACTS WITH bisphenol A; C60 fullerene; dimethylarsinic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: genomic screened homeo box 1; Gsh1; LOC288457
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,994,588 - 12,996,874 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1212,994,588 - 12,996,874 (-)EnsemblGRCr8
mRatBN7.2127,880,663 - 7,882,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,881,460 - 7,882,753 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx128,684,054 - 8,685,365 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,307,226 - 9,308,545 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,330,639 - 8,331,956 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,605,873 - 9,607,168 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,605,873 - 9,607,168 (-)Ensemblrn6Rnor6.0
Rnor_5.01211,718,789 - 11,720,084 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4128,551,150 - 8,552,445 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera129,709,969 - 9,711,264 (-)NCBICelera
RGSC_v3.1128,580,825 - 8,583,114 (+)NCBI
Cytogenetic Map12p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8589431   PMID:8631293   PMID:11731616   PMID:16715081  


Genomics

Comparative Map Data
Gsx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,994,588 - 12,996,874 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1212,994,588 - 12,996,874 (-)EnsemblGRCr8
mRatBN7.2127,880,663 - 7,882,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,881,460 - 7,882,753 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx128,684,054 - 8,685,365 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,307,226 - 9,308,545 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,330,639 - 8,331,956 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,605,873 - 9,607,168 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,605,873 - 9,607,168 (-)Ensemblrn6Rnor6.0
Rnor_5.01211,718,789 - 11,720,084 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4128,551,150 - 8,552,445 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera129,709,969 - 9,711,264 (-)NCBICelera
RGSC_v3.1128,580,825 - 8,583,114 (+)NCBI
Cytogenetic Map12p11NCBI
GSX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,792,483 - 27,794,768 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1327,792,483 - 27,794,768 (+)Ensemblhg38GRCh38
GRCh371328,366,620 - 28,368,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,264,780 - 27,266,089 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341327,264,779 - 27,266,089NCBI
Celera139,441,498 - 9,442,807 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef139,187,064 - 9,188,373 (+)NCBIHuRef
CHM1_11328,335,070 - 28,336,379 (+)NCBICHM1_1
T2T-CHM13v2.01327,013,594 - 27,015,879 (+)NCBIT2T-CHM13v2.0
Gsx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,125,492 - 147,127,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5147,125,506 - 147,127,757 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385147,188,696 - 147,190,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,188,696 - 147,190,947 (+)Ensemblmm10GRCm38
MGSCv375148,000,272 - 148,002,523 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365147,499,045 - 147,501,296 (+)NCBIMGSCv36mm8
Celera5145,180,198 - 145,182,437 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.79NCBI
Gsx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554977,167,915 - 7,169,177 (+)Ensembl
ChiLan1.0NW_0049554977,167,915 - 7,169,177 (+)NCBIChiLan1.0ChiLan1.0
GSX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21427,389,134 - 27,391,480 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11318,493,888 - 18,496,234 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,082,674 - 9,085,014 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11327,427,569 - 27,428,876 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1327,427,569 - 27,428,876 (+)EnsemblpanPan2panpan1.1
GSX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12511,853,483 - 11,855,169 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2511,853,462 - 11,855,445 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2511,917,276 - 11,918,622 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02511,982,856 - 11,984,202 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2511,982,944 - 11,984,202 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12511,877,452 - 11,878,799 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02511,870,107 - 11,871,451 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02511,914,113 - 11,915,461 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gsx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945172,952,389 - 172,954,801 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647222,997,650 - 22,998,928 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647222,997,650 - 22,998,928 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl115,194,603 - 5,197,041 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1115,194,872 - 5,197,275 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,818,622 - 4,819,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GSX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.136,920,476 - 6,925,538 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl36,923,832 - 6,925,091 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605737,464,347 - 37,466,708 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gsx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477610,705,843 - 10,707,093 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477610,704,726 - 10,707,108 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gsx1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1166,666,987 - 6,668,404 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gsx1
27 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:51
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000001260
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)121186960016966542Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
Gsh1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2127,880,789 - 7,880,938 (+)MAPPERmRatBN7.2
Rnor_6.0129,605,203 - 9,605,351NCBIRnor6.0
Rnor_5.01211,718,119 - 11,718,267UniSTSRnor5.0
RGSC_v3.4128,552,967 - 8,553,115UniSTSRGSC3.4
Celera129,709,299 - 9,709,447UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
2 88 3 1 3 1 89 8

Sequence


Ensembl Acc Id: ENSRNOT00000001260   ⟹   ENSRNOP00000001260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1212,994,588 - 12,996,874 (-)Ensembl
mRatBN7.2 Ensembl127,881,460 - 7,882,753 (-)Ensembl
Rnor_6.0 Ensembl129,605,873 - 9,607,168 (-)Ensembl
RefSeq Acc Id: NM_001191663   ⟹   NP_001178592
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,994,588 - 12,996,874 (-)NCBI
mRatBN7.2127,880,663 - 7,882,947 (-)NCBI
Rnor_6.0129,605,873 - 9,607,168 (-)NCBI
Rnor_5.01211,718,789 - 11,720,084 (-)NCBI
Celera129,709,969 - 9,711,264 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001178592 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE92721 (Get FASTA)   NCBI Sequence Viewer  
  EDL89567 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001260
  ENSRNOP00000001260.3
RefSeq Acc Id: NP_001178592   ⟸   NM_001191663
- UniProtKB: G3V634 (UniProtKB/TrEMBL),   A6K1A9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001260   ⟸   ENSRNOT00000001260
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V634-F1-model_v2 AlphaFold G3V634 1-261 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310020 AgrOrtholog
BioCyc Gene G2FUF-20112 BioCyc
Ensembl Genes ENSRNOG00000000952 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001260 ENTREZGENE
  ENSRNOT00000001260.6 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro GSH1/2 UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
KEGG Report rno:288457 UniProtKB/TrEMBL
NCBI Gene 288457 ENTREZGENE
PANTHER GS HOMEOBOX 1 UniProtKB/TrEMBL
  GS HOMEOBOX 2 UniProtKB/TrEMBL
Pfam Homeobox UniProtKB/TrEMBL
PhenoGen Gsx1 PhenoGen
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000952 RatGTEx
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt A6K1A9 ENTREZGENE, UniProtKB/TrEMBL
  G3V634 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Gsx1  GS homeobox 1  Gsh1_predicted  genomic screened homeo box 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Gsh1_predicted  genomic screened homeo box 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED