Washc4 (WASH complex subunit 4) - Rat Genome Database

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Gene: Washc4 (WASH complex subunit 4) Rattus norvegicus
Analyze
Symbol: Washc4
Name: WASH complex subunit 4
RGD ID: 1309995
Description: Predicted to be involved in endosomal transport and endosome organization. Predicted to act upstream of or within several processes, including endolysosomal toll-like receptor signaling pathway; neuromuscular process; and regulation of protein complex stability. Predicted to be part of BLOC-1 complex and WASH complex. Predicted to be active in endosome. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 43. Orthologous to human WASHC4 (WASH complex subunit 4); PARTICIPATES IN retromer-mediated pathway; INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314690; RGD1309995; similar to CG13957-PA; WASH complex subunit 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,075,546 - 22,127,847 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl722,050,098 - 22,127,828 (-)EnsemblGRCr8
mRatBN7.2720,187,905 - 20,240,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,187,922 - 20,240,226 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx722,160,116 - 22,212,601 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,322,871 - 24,375,355 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,099,880 - 24,152,367 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,309,279 - 26,361,221 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,311,094 - 26,361,221 (-)Ensemblrn6Rnor6.0
Rnor_5.0726,439,713 - 26,491,674 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4722,331,578 - 22,383,957 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera717,390,025 - 17,442,376 (-)NCBICelera
RGSC_v3.1722,352,255 - 22,404,214 (-)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
BLOC-1 complex  (ISO)
endosome  (IBA,ISO)
nucleoplasm  (ISO)
WASH complex  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Retromer and sorting nexins in endosomal sorting. Gallon M and Cullen PJ, Biochem Soc Trans. 2015 Feb;43(1):33-47. doi: 10.1042/BST20140290.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:19922875   PMID:20923837   PMID:23676666   PMID:27390154  


Genomics

Comparative Map Data
Washc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,075,546 - 22,127,847 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl722,050,098 - 22,127,828 (-)EnsemblGRCr8
mRatBN7.2720,187,905 - 20,240,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,187,922 - 20,240,226 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx722,160,116 - 22,212,601 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,322,871 - 24,375,355 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,099,880 - 24,152,367 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,309,279 - 26,361,221 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,311,094 - 26,361,221 (-)Ensemblrn6Rnor6.0
Rnor_5.0726,439,713 - 26,491,674 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4722,331,578 - 22,383,957 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera717,390,025 - 17,442,376 (-)NCBICelera
RGSC_v3.1722,352,255 - 22,404,214 (-)NCBI
Cytogenetic Map7q13NCBI
WASHC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812105,107,731 - 105,169,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12105,107,324 - 105,169,134 (+)Ensemblhg38GRCh38
GRCh3712105,501,509 - 105,562,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612104,025,622 - 104,087,038 (+)NCBIBuild 36Build 36hg18NCBI36
Celera12105,165,774 - 105,227,195 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12102,561,190 - 102,622,282 (+)NCBIHuRef
CHM1_112105,467,168 - 105,528,604 (+)NCBICHM1_1
T2T-CHM13v2.012105,069,550 - 105,130,947 (+)NCBIT2T-CHM13v2.0
Washc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391083,379,073 - 83,432,350 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1083,379,616 - 83,432,337 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381083,543,620 - 83,596,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1083,543,752 - 83,596,473 (+)Ensemblmm10GRCm38
MGSCv371083,006,686 - 83,059,218 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361082,973,571 - 83,026,272 (+)NCBIMGSCv36mm8
Celera1085,531,441 - 85,583,959 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.29NCBI
Washc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540539,451,404 - 39,499,295 (+)Ensembl
ChiLan1.0NW_00495540539,451,423 - 39,499,295 (+)NCBIChiLan1.0ChiLan1.0
WASHC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210113,177,675 - 113,239,015 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112113,174,083 - 113,235,411 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,689,904 - 102,751,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112106,085,558 - 106,146,795 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12106,085,523 - 106,146,796 (+)EnsemblpanPan2panpan1.1
WASHC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,245,944 - 33,300,142 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,248,098 - 33,300,057 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1033,165,407 - 33,219,500 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01034,087,229 - 34,141,324 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,087,398 - 34,141,278 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11033,822,702 - 33,876,812 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,106,857 - 34,160,925 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,300,174 - 34,354,257 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Washc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,518,997 - 16,574,935 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,530,674 - 9,585,462 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,527,889 - 9,585,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASHC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,417,130 - 79,474,609 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1579,417,119 - 79,474,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,604,200 - 82,645,879 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WASHC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111100,333,806 - 100,395,930 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11100,333,912 - 100,398,713 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037144,618,626 - 144,680,235 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Washc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247503,830,646 - 3,883,458 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Washc4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11164,909,803 - 164,964,096 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Washc4
374 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:256
Count of miRNA genes:170
Interacting mature miRNAs:210
Transcripts:ENSRNOT00000011326
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat

Markers in Region
D7Rat171  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8722,126,597 - 22,126,808 (+)Marker Load Pipeline
mRatBN7.2720,238,970 - 20,239,181 (+)MAPPERmRatBN7.2
Rnor_6.0726,359,973 - 26,360,183NCBIRnor6.0
Rnor_5.0726,490,428 - 26,490,638UniSTSRnor5.0
RGSC_v3.4722,382,725 - 22,382,935UniSTSRGSC3.4
RGSC_v3.4722,382,724 - 22,382,935RGDRGSC3.4
Celera717,441,128 - 17,441,338UniSTS
RGSC_v3.1722,402,995 - 22,403,206RGD
FHH x ACI Map74.4699RGD
FHH x ACI Map74.4699UniSTS
Cytogenetic Map7q13UniSTS
D7Got12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,196,851 - 20,197,073 (+)MAPPERmRatBN7.2
Rnor_6.0726,318,224 - 26,318,445NCBIRnor6.0
Rnor_5.0726,448,660 - 26,448,881UniSTSRnor5.0
RGSC_v3.4722,340,524 - 22,340,746RGDRGSC3.4
RGSC_v3.4722,340,525 - 22,340,746UniSTSRGSC3.4
Celera717,398,970 - 17,399,160UniSTS
RGSC_v3.1722,360,795 - 22,361,017RGD
RH 2.0 Map7122.4RGD
Cytogenetic Map7q13UniSTS
RH132790  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,188,036 - 20,188,249 (+)MAPPERmRatBN7.2
Rnor_6.0726,309,409 - 26,309,621NCBIRnor6.0
Rnor_5.0726,439,845 - 26,440,057UniSTSRnor5.0
RGSC_v3.4722,331,710 - 22,331,922UniSTSRGSC3.4
Celera717,390,155 - 17,390,367UniSTS
RH 3.4 Map7117.1UniSTS
Cytogenetic Map7q13UniSTS
BE106022  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,209,459 - 20,209,640 (+)MAPPERmRatBN7.2
Rnor_6.0726,330,832 - 26,331,012NCBIRnor6.0
Rnor_5.0726,461,268 - 26,461,448UniSTSRnor5.0
RGSC_v3.4722,353,133 - 22,353,313UniSTSRGSC3.4
Celera717,411,468 - 17,411,648UniSTS
RH 3.4 Map7117.75UniSTS
Cytogenetic Map7q13UniSTS
AA851013  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,188,199 - 20,188,404 (+)MAPPERmRatBN7.2
Rnor_6.0726,309,572 - 26,309,776NCBIRnor6.0
Rnor_5.0726,440,008 - 26,440,212UniSTSRnor5.0
RGSC_v3.4722,331,873 - 22,332,077UniSTSRGSC3.4
Celera717,390,318 - 17,390,522UniSTS
RH 3.4 Map7115.95UniSTS
Cytogenetic Map7q13UniSTS
RH124990  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,189,704 - 20,189,878 (+)MAPPERmRatBN7.2
Rnor_6.0726,311,077 - 26,311,250NCBIRnor6.0
Rnor_5.0726,441,513 - 26,441,686UniSTSRnor5.0
RGSC_v3.4722,333,378 - 22,333,551UniSTSRGSC3.4
Celera717,391,823 - 17,391,996UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011326   ⟹   ENSRNOP00000011326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,075,546 - 22,127,828 (-)Ensembl
mRatBN7.2 Ensembl720,187,922 - 20,240,226 (-)Ensembl
Rnor_6.0 Ensembl726,311,094 - 26,361,221 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157405   ⟹   ENSRNOP00000110449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,050,098 - 22,127,828 (-)Ensembl
RefSeq Acc Id: NM_001399772   ⟹   NP_001386701
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,075,546 - 22,127,828 (-)NCBI
mRatBN7.2720,187,916 - 20,240,201 (-)NCBI
RefSeq Acc Id: XM_006241205   ⟹   XP_006241267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,075,546 - 22,127,847 (-)NCBI
mRatBN7.2720,187,915 - 20,240,228 (-)NCBI
Rnor_6.0726,309,287 - 26,361,221 (-)NCBI
Rnor_5.0726,439,713 - 26,491,674 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765293   ⟹   XP_008763515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,075,546 - 22,116,846 (-)NCBI
mRatBN7.2720,187,905 - 20,229,218 (-)NCBI
Rnor_6.0726,309,279 - 26,349,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080078   ⟹   XP_038936006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,075,546 - 22,100,623 (-)NCBI
mRatBN7.2720,187,905 - 20,212,995 (-)NCBI
RefSeq Acc Id: XR_005486803
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,083,246 - 22,127,847 (-)NCBI
mRatBN7.2720,195,538 - 20,240,228 (-)NCBI
RefSeq Acc Id: XP_006241267   ⟸   XM_006241205
- Peptide Label: isoform X1
- UniProtKB: D4A7I6 (UniProtKB/TrEMBL),   A6IFG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763515   ⟸   XM_008765293
- Peptide Label: isoform X2
- UniProtKB: A6IFG5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011326   ⟸   ENSRNOT00000011326
RefSeq Acc Id: XP_038936006   ⟸   XM_039080078
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001386701   ⟸   NM_001399772
- UniProtKB: A6IFG4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110449   ⟸   ENSRNOT00000157405
Protein Domains
WASH complex subunit 4 N-terminal   WASH complex subunit 7 C-terminal   WASH complex subunit 7 central

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7I6-F1-model_v2 AlphaFold D4A7I6 1-1173 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695116
Promoter ID:EPDNEW_R5631
Type:initiation region
Name:Washc4_1
Description:WASH complex subunit 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0726,361,191 - 26,361,251EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309995 AgrOrtholog
BioCyc Gene G2FUF-34589 BioCyc
Ensembl Genes ENSRNOG00000008331 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011326 ENTREZGENE
  ENSRNOT00000011326.9 UniProtKB/TrEMBL
  ENSRNOT00000157405.1 UniProtKB/TrEMBL
InterPro WASH-7_C UniProtKB/TrEMBL
  WASH-7_central UniProtKB/TrEMBL
  WASH-7_N UniProtKB/TrEMBL
  WASH7 UniProtKB/TrEMBL
NCBI Gene 314690 ENTREZGENE
PANTHER PTHR31409 UniProtKB/TrEMBL
  WASH COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
Pfam WASH-7_C UniProtKB/TrEMBL
  WASH-7_mid UniProtKB/TrEMBL
  WASH-7_N UniProtKB/TrEMBL
PhenoGen Washc4 PhenoGen
RatGTEx ENSRNOG00000008331 RatGTEx
UniProt A0ABK0LHS6_RAT UniProtKB/TrEMBL
  A6IFG4 ENTREZGENE, UniProtKB/TrEMBL
  A6IFG5 ENTREZGENE, UniProtKB/TrEMBL
  D4A7I6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-01 Washc4  WASH complex subunit 4  RGD1309995  similar to CG13957-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309995  similar to CG13957-PA   RGD1309995_predicted  similar to CG13957-PA (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309995_predicted  similar to CG13957-PA (predicted)  LOC314690_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314690_predicted  similar to CG13957-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL