Ly86 (lymphocyte antigen 86) - Rat Genome Database

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Gene: Ly86 (lymphocyte antigen 86) Rattus norvegicus
Analyze
Symbol: Ly86
Name: lymphocyte antigen 86
RGD ID: 1309936
Description: Predicted to be involved in innate immune response and positive regulation of lipopolysaccharide-mediated signaling pathway. Orthologous to human LY86 (lymphocyte antigen 86); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291359
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81727,621,313 - 27,705,336 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1727,621,313 - 27,692,743 (-)EnsemblGRCr8
mRatBN7.21727,415,807 - 27,499,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1727,415,830 - 27,487,260 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1727,274,470 - 27,345,783 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,878,005 - 28,949,330 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01727,223,860 - 27,297,095 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01728,104,535 - 28,191,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1728,104,589 - 28,191,436 (-)Ensemblrn6Rnor6.0
Rnor_5.01730,007,722 - 30,093,425 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41733,667,680 - 33,768,108 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1727,046,145 - 27,118,415 (-)NCBICelera
RGSC_v3.11733,670,558 - 33,777,722 (-)NCBI
Cytogenetic Map17p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chloroprene  (EXP,ISO)
choline  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
DDT  (EXP)
dextran sulfate  (ISO)
diazinon  (EXP)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
fonofos  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
graphene oxide  (ISO)
hydralazine  (ISO)
L-methionine  (ISO)
leflunomide  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodimethylamine  (EXP)
nevirapine  (EXP)
nickel atom  (ISO)
nitrates  (ISO)
oxycodone  (EXP)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pirinixic acid  (EXP,ISO)
pravastatin  (EXP,ISO)
probucol  (ISO)
progesterone  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
tacrolimus hydrate  (ISO)
terbufos  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10880523  


Genomics

Comparative Map Data
Ly86
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81727,621,313 - 27,705,336 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1727,621,313 - 27,692,743 (-)EnsemblGRCr8
mRatBN7.21727,415,807 - 27,499,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1727,415,830 - 27,487,260 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1727,274,470 - 27,345,783 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,878,005 - 28,949,330 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01727,223,860 - 27,297,095 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01728,104,535 - 28,191,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1728,104,589 - 28,191,436 (-)Ensemblrn6Rnor6.0
Rnor_5.01730,007,722 - 30,093,425 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41733,667,680 - 33,768,108 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1727,046,145 - 27,118,415 (-)NCBICelera
RGSC_v3.11733,670,558 - 33,777,722 (-)NCBI
Cytogenetic Map17p12NCBI
LY86
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3866,588,720 - 6,654,982 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl66,588,108 - 6,654,983 (+)Ensemblhg38GRCh38
GRCh3766,588,953 - 6,655,215 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3666,533,933 - 6,600,215 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3466,533,932 - 6,600,215NCBI
Celera67,818,693 - 7,884,995 (+)NCBICelera
Cytogenetic Map6p25.1NCBI
HuRef66,465,287 - 6,531,581 (+)NCBIHuRef
CHM1_166,591,175 - 6,657,439 (+)NCBICHM1_1
T2T-CHM13v2.066,457,947 - 6,524,157 (+)NCBIT2T-CHM13v2.0
Ly86
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391337,529,276 - 37,603,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1337,529,184 - 37,603,012 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381337,345,345 - 37,419,036 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1337,345,208 - 37,419,036 (+)Ensemblmm10GRCm38
MGSCv371337,437,214 - 37,510,905 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361337,352,811 - 37,426,410 (+)NCBIMGSCv36mm8
Celera1338,456,875 - 38,530,185 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.7NCBI
Ly86
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554657,102,385 - 7,168,595 (-)Ensembl
ChiLan1.0NW_0049554657,106,182 - 7,168,046 (-)NCBIChiLan1.0ChiLan1.0
LY86
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2521,232,251 - 21,299,054 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1617,228,488 - 17,295,386 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v066,429,846 - 6,496,664 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.166,610,431 - 6,676,696 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl66,610,431 - 6,676,696 (+)EnsemblpanPan2panpan1.1
LY86
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,627,744 - 6,687,170 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,627,598 - 6,687,166 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha356,631,760 - 6,691,099 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0356,709,199 - 6,768,701 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl356,709,059 - 6,768,698 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1356,563,069 - 6,622,003 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0356,590,001 - 6,649,509 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,922,551 - 7,981,724 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ly86
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494617,579,116 - 17,639,132 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365345,848,100 - 5,908,114 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365345,848,110 - 5,908,082 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LY86
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl74,108,118 - 4,156,625 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.174,108,124 - 4,156,629 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LY86
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11765,544,971 - 65,610,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1765,547,690 - 65,610,639 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660446,537,387 - 6,603,103 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ly86
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475618,770,503 - 18,820,672 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475618,770,503 - 18,821,191 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ly86
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11456,388,178 - 56,455,071 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ly86
639 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:89
Interacting mature miRNAs:100
Transcripts:ENSRNOT00000000149
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171553702528637951Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat

Markers in Region
D17Rat14  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81727,645,053 - 27,645,204 (+)Marker Load Pipeline
mRatBN7.21727,439,570 - 27,439,721 (+)MAPPERmRatBN7.2
Rnor_6.01728,130,688 - 28,130,838NCBIRnor6.0
Rnor_5.01730,032,682 - 30,032,832UniSTSRnor5.0
RGSC_v3.41733,719,773 - 33,719,924RGDRGSC3.4
RGSC_v3.41733,719,774 - 33,719,924UniSTSRGSC3.4
Celera1727,070,740 - 27,070,888UniSTS
RGSC_v3.11733,722,615 - 33,722,765RGD
RH 3.4 Map17342.6UniSTS
RH 3.4 Map17342.6RGD
RH 2.0 Map17244.5RGD
SHRSP x BN Map1721.7599RGD
Cytogenetic Map17p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 157 91 90 59 92 59 6 355 192 11 136 80 92 31 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000000149   ⟹   ENSRNOP00000000149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1727,621,313 - 27,692,743 (-)Ensembl
mRatBN7.2 Ensembl1727,415,830 - 27,487,260 (-)Ensembl
Rnor_6.0 Ensembl1728,104,589 - 28,191,436 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113461   ⟹   ENSRNOP00000096025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1727,437,221 - 27,487,260 (-)Ensembl
RefSeq Acc Id: NM_001106128   ⟹   NP_001099598
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81727,621,313 - 27,692,743 (-)NCBI
mRatBN7.21727,415,830 - 27,487,260 (-)NCBI
Rnor_6.01728,104,589 - 28,178,882 (-)NCBI
Rnor_5.01730,007,722 - 30,093,425 (-)NCBI
RGSC_v3.41733,667,680 - 33,768,108 (-)RGD
Celera1727,046,145 - 27,118,415 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253800   ⟹   XP_006253862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81727,621,324 - 27,705,336 (-)NCBI
mRatBN7.21727,415,807 - 27,499,695 (-)NCBI
Rnor_6.01728,104,535 - 28,191,447 (-)NCBI
Rnor_5.01730,007,722 - 30,093,425 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001099598 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253862 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98277 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000149
  ENSRNOP00000000149.5
RefSeq Acc Id: NP_001099598   ⟸   NM_001106128
- UniProtKB: D3ZAS0 (UniProtKB/TrEMBL),   A6J7C7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253862   ⟸   XM_006253800
- Peptide Label: isoform X1
- UniProtKB: D3ZAS0 (UniProtKB/TrEMBL),   A6J7C7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000149   ⟸   ENSRNOT00000000149
Ensembl Acc Id: ENSRNOP00000096025   ⟸   ENSRNOT00000113461
Protein Domains
MD-2-related lipid-recognition

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAS0-F1-model_v2 AlphaFold D3ZAS0 1-187 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309936 AgrOrtholog
BioCyc Gene G2FUF-9647 BioCyc
Ensembl Genes ENSRNOG00000000137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000149 ENTREZGENE
  ENSRNOT00000000149.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.770 UniProtKB/TrEMBL
InterPro Ig_E-set UniProtKB/TrEMBL
  LY86 UniProtKB/TrEMBL
  MD-2_lipid-recog UniProtKB/TrEMBL
KEGG Report rno:291359 UniProtKB/TrEMBL
NCBI Gene 291359 ENTREZGENE
PANTHER LYMPHOCYTE ANTIGEN 86 UniProtKB/TrEMBL
  PTHR20838 UniProtKB/TrEMBL
Pfam E1_DerP2_DerF2 UniProtKB/TrEMBL
PhenoGen Ly86 PhenoGen
RatGTEx ENSRNOG00000000137 RatGTEx
SMART SM00737 UniProtKB/TrEMBL
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
UniProt A6J7C7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAS0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ly86  lymphocyte antigen 86   Ly86_predicted  lymphocyte antigen 86 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ly86_predicted  lymphocyte antigen 86 (predicted)      Symbol and Name status set to approved 70820 APPROVED