Ndufaf5 (NADH:ubiquinone oxidoreductase complex assembly factor 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ndufaf5 (NADH:ubiquinone oxidoreductase complex assembly factor 5) Rattus norvegicus
Analyze
Symbol: Ndufaf5
Name: NADH:ubiquinone oxidoreductase complex assembly factor 5
RGD ID: 1309829
Description: Predicted to enable monooxygenase activity. Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in matrix side of mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 16. Orthologous to human NDUFAF5 (NADH:ubiquinone oxidoreductase complex assembly factor 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; aconitine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: arginine-hydroxylase NDUFAF5, mitochondrial; LOC296190; NADH dehydrogenase (ubiquinone) complex I, assembly factor 5; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5; probable methyltransferase C20orf7 homolog, mitochondrial; putative methyltransferase NDUFAF5; RGD1309829; similar to dJ842G6.1.1 (novel protein)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83147,961,612 - 147,991,128 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3147,961,599 - 147,991,126 (+)EnsemblGRCr8
mRatBN7.23127,507,931 - 127,537,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3127,507,941 - 127,537,477 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3131,371,136 - 131,400,649 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03139,955,232 - 139,984,745 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03137,658,373 - 137,687,888 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03133,232,412 - 133,261,932 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3133,232,432 - 133,261,973 (+)Ensemblrn6Rnor6.0
Rnor_5.03139,688,300 - 139,717,717 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43128,353,866 - 128,384,213 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3126,154,809 - 126,184,287 (+)NCBICelera
RGSC_v3.13128,259,473 - 128,289,786 (+)NCBI
Cytogenetic Map3q41NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:18940309   PMID:27226634  


Genomics

Comparative Map Data
Ndufaf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83147,961,612 - 147,991,128 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3147,961,599 - 147,991,126 (+)EnsemblGRCr8
mRatBN7.23127,507,931 - 127,537,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3127,507,941 - 127,537,477 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3131,371,136 - 131,400,649 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03139,955,232 - 139,984,745 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03137,658,373 - 137,687,888 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03133,232,412 - 133,261,932 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3133,232,432 - 133,261,973 (+)Ensemblrn6Rnor6.0
Rnor_5.03139,688,300 - 139,717,717 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43128,353,866 - 128,384,213 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3126,154,809 - 126,184,287 (+)NCBICelera
RGSC_v3.13128,259,473 - 128,289,786 (+)NCBI
Cytogenetic Map3q41NCBI
NDUFAF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382013,785,028 - 13,821,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2013,785,007 - 13,821,580 (+)Ensemblhg38GRCh38
GRCh372013,765,674 - 13,802,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362013,713,682 - 13,745,874 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2013,835,718 - 13,869,123 (+)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2013,720,309 - 13,753,711 (+)NCBIHuRef
CHM1_12013,765,617 - 13,799,023 (+)NCBICHM1_1
T2T-CHM13v2.02013,828,747 - 13,865,323 (+)NCBIT2T-CHM13v2.0
Ndufaf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392140,012,504 - 140,047,172 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2140,012,569 - 140,045,609 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382140,170,584 - 140,218,965 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2140,170,649 - 140,203,689 (+)Ensemblmm10GRCm38
MGSCv372139,996,382 - 140,030,988 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362139,862,471 - 139,895,073 (+)NCBIMGSCv36mm8
Celera2141,356,217 - 141,391,065 (+)NCBICelera
Cytogenetic Map2F3NCBI
cM Map269.2NCBI
Ndufaf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541523,221,084 - 23,262,073 (+)Ensembl
ChiLan1.0NW_00495541523,221,084 - 23,263,548 (+)NCBIChiLan1.0ChiLan1.0
NDUFAF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22114,679,233 - 14,715,055 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12014,675,994 - 14,724,032 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02013,751,315 - 13,788,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12013,735,768 - 13,769,147 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2013,735,798 - 13,768,671 (+)EnsemblpanPan2panpan1.1
NDUFAF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1248,810,682 - 8,873,212 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl248,837,253 - 8,873,176 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha248,621,611 - 8,684,816 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0249,249,725 - 9,285,751 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl249,247,744 - 9,285,708 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1248,822,205 - 8,885,310 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0248,918,663 - 8,981,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0249,267,158 - 9,330,256 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ndufaf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640157,563,024 - 157,593,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364855,992,668 - 6,025,467 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364855,994,388 - 6,025,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1722,480,340 - 22,511,180 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11722,480,344 - 22,508,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21725,160,198 - 25,188,788 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1242,670,613 - 42,706,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl242,670,421 - 42,711,024 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660542,946,890 - 2,982,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474114,778,109 - 14,823,893 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474114,778,126 - 14,824,079 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ndufaf5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15119,473,820 - 119,503,321 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ndufaf5
120 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:37
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000006412
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3136091420155634702Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006412   ⟹   ENSRNOP00000006412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3147,961,599 - 147,991,126 (+)Ensembl
mRatBN7.2 Ensembl3127,507,941 - 127,537,477 (+)Ensembl
Rnor_6.0 Ensembl3133,232,432 - 133,261,973 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116882   ⟹   ENSRNOP00000081769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3127,507,941 - 127,537,059 (+)Ensembl
RefSeq Acc Id: NM_001126371   ⟹   NP_001119843
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,961,612 - 147,991,128 (+)NCBI
mRatBN7.23127,507,959 - 127,537,477 (+)NCBI
Rnor_6.03133,232,446 - 133,261,932 (+)NCBI
Rnor_5.03139,688,300 - 139,717,717 (+)NCBI
RGSC_v3.43128,353,866 - 128,384,213 (+)RGD
Celera3126,154,809 - 126,184,287 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235097   ⟹   XP_006235159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,961,647 - 147,991,128 (+)NCBI
mRatBN7.23127,507,931 - 127,537,477 (+)NCBI
Rnor_6.03133,232,412 - 133,261,932 (+)NCBI
Rnor_5.03139,688,300 - 139,717,717 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104593   ⟹   XP_038960521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,961,791 - 147,991,128 (+)NCBI
mRatBN7.23127,508,234 - 127,537,477 (+)NCBI
RefSeq Acc Id: XM_063283340   ⟹   XP_063139410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,961,790 - 147,991,128 (+)NCBI
RefSeq Acc Id: XM_063283341   ⟹   XP_063139411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,961,786 - 147,991,128 (+)NCBI
RefSeq Acc Id: XM_063283342   ⟹   XP_063139412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,973,051 - 147,991,128 (+)NCBI
RefSeq Acc Id: XR_005501826
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,961,647 - 147,990,846 (+)NCBI
mRatBN7.23127,507,931 - 127,537,191 (+)NCBI
RefSeq Acc Id: XR_005501827
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83147,961,647 - 147,980,587 (+)NCBI
mRatBN7.23127,507,931 - 127,526,933 (+)NCBI
RefSeq Acc Id: NP_001119843   ⟸   NM_001126371
- Peptide Label: precursor
- UniProtKB: B2GV71 (UniProtKB/Swiss-Prot),   A0A8I5ZTK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235159   ⟸   XM_006235097
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000006412   ⟸   ENSRNOT00000006412
RefSeq Acc Id: XP_038960521   ⟸   XM_039104593
- Peptide Label: isoform X2
- UniProtKB: A6HQM0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081769   ⟸   ENSRNOT00000116882
RefSeq Acc Id: XP_063139411   ⟸   XM_063283341
- Peptide Label: isoform X2
- UniProtKB: A6HQM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139410   ⟸   XM_063283340
- Peptide Label: isoform X2
- UniProtKB: A6HQM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139412   ⟸   XM_063283342
- Peptide Label: isoform X2
- UniProtKB: A6HQM0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2GV71-F1-model_v2 AlphaFold B2GV71 1-343 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692473
Promoter ID:EPDNEW_R2996
Type:initiation region
Name:Ndufaf5_1
Description:NADH:ubiquinone oxidoreductase complex assembly factor 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03133,232,499 - 133,232,559EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309829 AgrOrtholog
BioCyc Gene G2FUF-47662 BioCyc
Ensembl Genes ENSRNOG00000004784 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006412 ENTREZGENE
  ENSRNOT00000006412.7 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7307233 IMAGE-MGC_LOAD
InterPro Malonyl-ACP_OMT UniProtKB/Swiss-Prot
  Methyltransf_11 UniProtKB/Swiss-Prot
  SAM-dependent_MTases UniProtKB/Swiss-Prot
KEGG Report rno:296190 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188157 IMAGE-MGC_LOAD
NCBI Gene 296190 ENTREZGENE
PANTHER ARGININE-HYDROXYLASE NDUFAF5, MITOCHONDRIAL UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam Methyltransf_11 UniProtKB/Swiss-Prot
PhenoGen Ndufaf5 PhenoGen
RatGTEx ENSRNOG00000004784 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot
UniProt A0A8I5ZTK1 ENTREZGENE
  A6HQM0 ENTREZGENE, UniProtKB/TrEMBL
  B2GV71 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-23 Ndufaf5  NADH:ubiquinone oxidoreductase complex assembly factor 5  Ndufaf5  NADH dehydrogenase (ubiquinone) complex I, assembly factor 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Ndufaf5  NADH dehydrogenase (ubiquinone) complex I, assembly factor 5  RGD1309829  similar to dJ842G6.1.1 (novel protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309829  similar to dJ842G6.1.1 (novel protein)   RGD1309829_predicted  similar to dJ842G6.1.1 (novel protein) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309829_predicted  similar to dJ842G6.1.1 (novel protein) (predicted)  LOC296190_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC296190_predicted  similar to dJ842G6.1.1 (novel protein) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL