Caps2 (calcyphosine 2) - Rat Genome Database

Name: Caps2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Caps2 (calcyphosine 2) Rattus norvegicus

Analyze

Symbol:

Caps2

Name:

calcyphosine 2

RGD ID:

1309826

Description:

Predicted to enable calcium ion binding activity. Orthologous to human CAPS2 (calcyphosine 2); INTERACTS WITH azoxystrobin; bisphenol A; chlorpyrifos.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

calcyphosin-2; calcyphosphine 2; LOC366891

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CAPS2 (calcyphosine 2)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, Treefam
Mus musculus (house mouse):	Caps2 (calcyphosphine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Caps2 (calcyphosine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CAPS2 (calcyphosine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CAPS2 (calcyphosine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Caps2 (calcyphosine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CAPS2 (calcyphosine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CAPS2 (calcyphosine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Caps2 (calcyphosine 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UQCC3 (ubiquinol-cytochrome c reductase complex assembly factor 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CAPS2 (calcyphosine 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Caps2 (calcyphosphine 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	caps2 (calcyphosine 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	caps2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	49,467,320 - 49,525,465 (+)	NCBI		GRCr8
mRatBN7.2	7	47,580,636 - 47,641,598 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	47,581,137 - 47,639,229 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	49,483,391 - 49,547,407 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	51,686,478 - 51,750,497 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	51,464,306 - 51,528,323 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	54,858,841 - 54,917,406 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	54,859,104 - 54,917,323 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	54,878,735 - 54,939,800 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	51,180,547 - 51,239,062 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	51,212,317 - 51,258,552 (+)	NCBI
Celera	7	44,376,718 - 44,434,527 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

cisplatin (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

furan (EXP)

glyphosate (EXP)

imidacloprid (EXP)

indometacin (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

monosodium L-glutamate (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

tetraphene (ISO)

thiabendazole (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

calcium ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Caps2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	49,467,320 - 49,525,465 (+)	NCBI		GRCr8
mRatBN7.2	7	47,580,636 - 47,641,598 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	47,581,137 - 47,639,229 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	49,483,391 - 49,547,407 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	51,686,478 - 51,750,497 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	51,464,306 - 51,528,323 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	54,858,841 - 54,917,406 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	54,859,104 - 54,917,323 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	54,878,735 - 54,939,800 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	51,180,547 - 51,239,062 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	51,212,317 - 51,258,552 (+)	NCBI
Celera	7	44,376,718 - 44,434,527 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

CAPS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	75,275,979 - 75,390,901 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	75,275,979 - 75,390,928 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	75,669,759 - 75,784,681 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	73,957,276 - 74,070,969 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	73,957,275 - 74,070,969	NCBI
Celera	12	75,337,122 - 75,391,273 (-)	NCBI		Celera
Cytogenetic Map	12	q21.1-q21.2	NCBI
HuRef	12	72,719,309 - 72,773,367 (-)	NCBI		HuRef
CHM1_1	12	75,635,051 - 75,689,107 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	75,250,589 - 75,365,485 (-)	NCBI		T2T-CHM13v2.0

Caps2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	111,999,254 - 112,052,466 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	111,999,526 - 112,052,460 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	112,163,349 - 112,216,561 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	112,163,621 - 112,216,555 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	111,602,732 - 111,653,611 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	111,567,731 - 111,620,665 (+)	NCBI		MGSCv36	mm8
Celera	10	114,112,594 - 114,155,779 (+)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	60.18	NCBI

Caps2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955405	14,658,335 - 14,761,708 (-)	NCBI	ChiLan1.0	ChiLan1.0

CAPS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	83,318,262 - 83,433,266 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	83,314,654 - 83,429,693 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	72,802,285 - 72,917,195 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	75,655,635 - 75,708,879 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	75,654,845 - 75,708,879 (-)	Ensembl	panpan1.1		panPan2

CAPS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	15,843,765 - 15,924,473 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	15,843,975 - 15,888,355 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	15,788,378 - 15,871,219 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	16,033,162 - 16,116,044 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	16,031,573 - 16,078,339 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	15,842,740 - 15,925,592 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	16,096,976 - 16,179,794 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	16,221,854 - 16,304,848 (-)	NCBI		UU_Cfam_GSD_1.0

Caps2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	41,932,787 - 41,982,614 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936568	3,746,552 - 3,790,869 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAPS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	38,573,320 - 38,625,070 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	38,577,308 - 38,625,878 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	42,097,902 - 42,118,739 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAPS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	70,879,237 - 70,934,261 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	174,629,939 - 174,705,284 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Caps2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624750	22,675,126 - 22,724,014 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Caps2
477 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	447
Count of miRNA genes:	208
Interacting mature miRNAs:	226
Transcripts:	ENSRNOT00000039141
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	19654317	49753746	Rat
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	19654317	49753746	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	29409683	53612950	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	37960569	82960569	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	41109692	56793354	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	42787314	87787314	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	43228750	88228750	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	43747012	108555253	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	43747099	102228765	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	44867533	89867533	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	46590070	91590070	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	47251783	65728867	Rat

Markers in Region

AU048656

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	47,606,350 - 47,606,621 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	54,884,296 - 54,884,566	NCBI	Rnor6.0
Rnor_5.0	7	54,907,237 - 54,907,507	UniSTS	Rnor5.0
RGSC_v3.4	7	51,205,517 - 51,205,787	UniSTS	RGSC3.4
Celera	7	44,401,665 - 44,401,935	UniSTS
Cytogenetic Map	7	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											3
Low	3		37	35	1	35			48	23	31	11
Below cutoff		14	20	6	11	6	1	1	26	12	7		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001395581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000039141 ⟹ ENSRNOP00000035894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	47,581,137 - 47,639,229 (+)	Ensembl
Rnor_6.0 Ensembl	7	54,859,326 - 54,917,177 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087341 ⟹ ENSRNOP00000069988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	47,581,142 - 47,639,229 (+)	Ensembl
Rnor_6.0 Ensembl	7	54,859,104 - 54,917,323 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104446 ⟹ ENSRNOP00000087148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	47,581,415 - 47,639,229 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105289 ⟹ ENSRNOP00000078561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	47,581,415 - 47,639,229 (+)	Ensembl

RefSeq Acc Id:

NM_001395581 ⟹ NP_001382510

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,467,484 - 49,525,465 (+)	NCBI
mRatBN7.2	7	47,581,248 - 47,639,229 (+)	NCBI

RefSeq Acc Id:

XM_006241337 ⟹ XP_006241399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,467,603 - 49,525,426 (+)	NCBI
mRatBN7.2	7	47,581,240 - 47,641,598 (+)	NCBI
Rnor_6.0	7	54,859,162 - 54,917,406 (+)	NCBI
Rnor_5.0	7	54,878,735 - 54,939,800 (+)	NCBI

Sequence:

show sequence

TTGTCTGCTAGTGCAGGGGTGTTTGTCCGGAGTGTAGGAAGTAGAGGCAGCCCGGAAGAGTGGA
AGTATGGTAGCACAGCTTGGGGTCCAGAGGTGGAGTTGAAGTCCCTTTTATTTCTGGGGAAGTT
GGAGAGGGTGAGGAGGCCTAGTGAACCGGTGCCAGTTGCCTAGCAACCGGAGACGCTGCTCTAG
ACTCGTGTTTTCTGGGAACTGCTCCTGAGTTTGCCTATGAGAAAGCTCTCAGAAGGAAGTTCTT
GGTGGAATCACTTTGGTTTATACCCCTTTCAGTCCTTCTATTTCCGGTTTGGGTTGAATGGGGC
TAACACTCTTAGGTCAAGTCAGCTTGCCTTGTTTCCTAGTGTGGCCCTGAAGAAGGGGATAGTG
GATTCCTTTTGGAGCGCTCCAGATACTGTGAAGCTCTCTACTAAGCCCGGAGACAAAAAGTGAG
GAGCACCGGGCGCCATCACTTTTATAAGCTTACTGTGTTACCGAAGACTAATTGGTGCAACTTG
GAGCTGCAAACACCCTACCCAGTTGCTTCCAGAAAGACTAAAATATAGCACGCTGTACAAGACA
TACAGACATTTGAATGGATTTAGAGGTGAAAGGGGTGGCTGCAGCTAGGAGCCAAACTCAGCTA
TATTCTGGAAGAAAGAATTCACTGAAACAAGGATGGACTTCCAGATCATGGGCAATTCAAAATT
CCTGCCTACCTATGGTCCCACCACTTGATCTGGGAAGCCTTGTTGACTCTGATGAGGAGGATAA
GTTTTCACCAGCACCACGTGGTACCGTCCATGATGCTCCACGGTCACAGCCTACTCTGAGCTAC
ATTATGCCGTGTCAAAGGCCATATATTCAACATCATCTAAATGAAGCGGAACAGGACACAATAC
CTGAGGATTTGCCAGCACCAACAGGCAAATACAAGCTAAAATACCAGCAGTATGCAAGTGAAAT
GAAGGACGGCTACAAACAGTACATTCAGAGGAGTGCAGAGAAGCCAAAGCCAGGAAAAGGGCCA
GAGGCTAACAAGAAGGTAGAAGGAGCCTGCCTGGATGACCTCATAACTTTGGATAGGAAAGCCC
TATTACAGCAAGGCTATGCAGACAGCCCTTACCATAGACGGAGCAGTGCAAAGAAATCAGATGT
GGAGACTGTGGCTCTAGAGAAGAAGAGGCAGACTGTTGCAGAACAAATGATGGTAGACCACTTA
TCCAGGGCTGTCATCAGTGATCCAGAACAAGATTTAAACACCAAGAACCAAGAGAGCTCTCATG
TCCCTCCAGACTCAGAGAGGGCGCCTCTTCGAGTTAGGAGACGAACTCTGCATGAAACGAAGAT
AAGAACCAACTCCACATTAACAGAGAATGACCTTTCTCAGAAAGTAGAATTCGAAGGGAGGGTC
TTATCAAGAAATGGACGCGATGCCTGCAGGGAACTGATTGGGTTTTTCTTTGCCCATGACCAGT
CCCTAACTGTGTATGAGTATCGAATGTTTGGGAAAAACAGAACAAGCGTGCTTCCTTTTATTAA
AAAAGACGTTTATTGTCATCAGTATGGACAGAGAAAAGGAGAGCAATATGAGCTTGGTGACTTC
TATACTGGTGCAACTTTGACATTTCTGAGCTGTGATCATCCTAGCCTTCCAAAGAGCATAAAAG
AAAATGCATTACTTAGACTTCGAATTACAAGTATTGATCAAGTAGCTTTGGATTCTCTGAAAGC
TGCCTCTGCGGAACCCGGGAGAGAAGATCCAGTCAGTCAGGAGGCACAAGACCAGCTGGTGCTG
CAGGCCATTCAAGAGAAACTAAAAGAACAACTGCACACGAAAGGTGTTCGGATTTTGACCGGAT
TGGGAAAATACTTTCAACGTTTGGACAAGGAAGGGAATGGGCTTTTAGAAAAGACAGATTTTCA
GCAAGCTCTGGAAACCTTCCACTTGGAAGTGTCTGAGCAGGACTTTGAGTCTTCCTGGCTAATC
CTGCTAGGCCATGGCCATAGCCAGAACAAGGTTGATTATGGAGAATTCAAACGTGCCATTTTTG
GTGAAATGAATGAATATAGGAAATCATTTGTTCGCAAGGCCTTCATGAAATTGGATTTTAACAA
AACCGGCACCGTGTCTGTTATAGACATAAGAAAGTGTTACTGTGCAAAGAAGCACCCACGTGTG
ATTTCAGGGCATTCAACAGAGGAGGAAATCAAATCGTCTTTCCTAGAGACATTAAAAGACGCCT
GCAGCAAGCCTGATGAAGTTTCGTACGGTGAATTTGAAGATTATTATGAAGGCCTAAGTGTAGG
GATAGCAGGCGATGAAGACTTTGTCAATATCTTATGTACTCCATGGGGAATTTAGTTTTCAATA
ATGCACATTCTCACCGGCACCAAGCATTTCATAGTTAATATGCACTTTACATAAAATATGATCA
GCTTGTAATATATTTTCTAAGATTCTTTTTAACTTTCTTTAAAAGTGAAGTCTGGAAAGGCTAA
TGCAGAACTCAATATGTGTTTTTGAGCACATATACATGCTTATATGTCTAAATGTTTATAAAGA
CAGTTCTTTTTGCTCATTCTTATCTTATACTTATTATATATCTATTTATTACACTTGTAATACT
GATGCTTATTGTATCTCTTATCCTACCAGAATAAGATGGTCCTTATTCTTATATATTATACTCC
TTACACTTATTTTAGAAAAGTAGTTAAAATTTAGCCTTAATAGAAAAGTAACATTTTCATCAAA
CTCTATGAGGGCTTATATAGTGATCCTTTTTTGTCCTTTCTCAATTTTCTTATAACCTTTCTCT
AGAATACAGTTGCCACCATTCTCAATTTAATGATGTGGGATTCAGATCAAGGCTGTAGTAGTTA
GTGCAACTTGTTTGAAAGGTGAAAATATCCAGATATTTGTAAAAGCAATGTTAAAGTCAGTATG
ATTATGGGTGTTTTCTATGCATTGTATTTCAAATGGTTGGTGTTTACTCCTCAATGTTTATTTA
AAGAGAATTGGTATTTATTTTTGTCTTCAAAATTATATACTACTCTTTGTTCACTTGGAAAAAT
TACATTTTATTTTCTATTTTAACCGTCATATTATCTGTATACAAACATTACTTAAAAGTAAACA
ACAAAATGTAGGAAACCTTGGAGTGTATAAATATCCCCTTAGACTATTAAATGAATTCTGAAAT
AATTAAATGATTTTTATACAAAATTTAAAAGCATACTTTGTATCACAAAATAAAGACATGGTAT
TCTAAGCACCTCTTCTTGGTATAAGAAACCATCAGAACATTTTCTTCTACATATACTCTGTTTA
ATGGCTTCCTACTCTACGTGCATTCTTTCTACAGTGTATTCCTGACTTATCCCTGGATAGAATG
TACTGAGTGTTGGAATTACGGATGTGTTAGTTTCTTGTCTATATTATCAATGCTAATTACCACA
CGGTAGGGAAGAGAACATGGAAAGAAGGGTGCCAGAGGAGAAACTTACCAGCCAGAAGTGTAAC
AGTCTGTCTATTCATCCATC

hide sequence

RefSeq Acc Id:

XM_017595018 ⟹ XP_017450507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,467,320 - 49,525,426 (+)	NCBI
mRatBN7.2	7	47,580,636 - 47,641,598 (+)	NCBI
Rnor_6.0	7	54,858,841 - 54,917,406 (+)	NCBI

Sequence:

show sequence

AAGATGCTGCAGTCTTAGCTACGATTTTGGTGGGAAAATTGGCTGTGATCCAGGATACTTTTAT
GGTGTTTTCTCCTCGAATATCAAACTGGACTCTGGACATAATGGTAGTTGCTCTGTGAAATAAT
GTTCAAAGGAATTCCACTTAAGGAATGGTCCTCCGTGATCCTTGCCGGGTTTTTGTGCTCTCCT
GGCGCAGAAGTTTGCTGTGCTTCAGTCCTCTGCTGCACTCCAGGCCAGGGTTTATCACACCTCA
GAGCTGTACTCTTGCACCTGGGAGGCTGCACCCTAAAAAAGAAAGCCTTTGGACTCCGGGCTCT
CTACTAAGCCCGGAGACAAAAAGTGAGGAGCACCGGGCGCCATCACTTTTATAAGCTTACTGTG
TTACCGAAGACTAATTGGTGCAACTTGGAGCTGCAAACACCCTACCCAGTTGCTTCCAGAAAGA
CTAAAATATAGCACGCTGTACAAGACATACAGACATTTGAATGGATTTAGAGGTGAAAGGGGTG
GCTGCAGCTAGGAGCCAAACTCAGCTATATTCTGGAAGAAAGAATTCACTGAAACAAGGATGGA
CTTCCAGATCATGGGCAATTCAAAATTCCTGCCTACCTATGGTCCCACCACTTGATCTGGGAAG
CCTTGTTGACTCTGATGAGGAGGATAAGTTTTCACCAGCACCACGTGGTACCGTCCATGATGCT
CCACGGTCACAGCCTACTCTGAGCTACATTATGCCGTGTCAAAGGCCATATATTCAACATCATC
TAAATGAAGCGGAACAGGACACAATACCTGAGGATTTGCCAGCACCAACAGGCAAATACAAGCT
AAAATACCAGCAGTATGCAAGTGAAATGAAGGACGGCTACAAACAGTACATTCAGAGGAGTGCA
GAGAAGCCAAAGCCAGGAAAAGGGCCAGAGGCTAACAAGAAGGTAGAAGGAGCCTGCCTGGATG
ACCTCATAACTTTGGATAGGAAAGCCCTATTACAGCAAGGCTATGCAGACAGCCCTTACCATAG
ACGGAGCAGTGCAAAGAAATCAGATGTGGAGACTGTGGCTCTAGAGAAGAAGAGGCAGACTGTT
GCAGAACAAATGATGGTAGACCACTTATCCAGGGCTGTCATCAGTGATCCAGAACAAGATTTAA
ACACCAAGAACCAAGAGAGCTCTCATGTCCCTCCAGACTCAGAGAGGGCGCCTCTTCGAGTTAG
GAGACGAACTCTGCATGAAACGAAGATAAGAACCAACTCCACATTAACAGAGAATGACCTTTCT
CAGAAAGTAGAATTCGAAGGGAGGGTCTTATCAAGAAATGGACGCGATGCCTGCAGGGAACTGA
TTGGGTTTTTCTTTGCCCATGACCAGTCCCTAACTGTGTATGAGTATCGAATGTTTGGGAAAAA
CAGAACAAGCGTGCTTCCTTTTATTAAAAAAGACGTTTATTGTCATCAGTATGGACAGAGAAAA
GGAGAGCAATATGAGCTTGGTGACTTCTATACTGGTGCAACTTTGACATTTCTGAGCTGTGATC
ATCCTAGCCTTCCAAAGAGCATAAAAGAAAATGCATTACTTAGACTTCGAATTACAAGTATTGA
TCAAGTAGCTTTGGATTCTCTGAAAGCTGCCTCTGCGGAACCCGGGAGAGAAGATCCAGTCAGT
CAGGAGGCACAAGACCAGCTGGTGCTGCAGGCCATTCAAGAGAAACTAAAAGAACAACTGCACA
CGAAAGGTGTTCGGATTTTGACCGGATTGGGAAAATACTTTCAACGTTTGGACAAGGAAGGGAA
TGGGCTTTTAGAAAAGACAGATTTTCAGCAAGCTCTGGAAACCTTCCACTTGGAAGTGTCTGAG
CAGGACTTTGAGTCTTCCTGGCTAATCCTGCTAGGCCATGGCCATAGCCAGAACAAGGTTGATT
ATGGAGAATTCAAACGTGCCATTTTTGGTGAAATGAATGAATATAGGAAATCATTTGTTCGCAA
GGCCTTCATGAAATTGGATTTTAACAAAACCGGCACCGTGTCTGTTATAGACATAAGAAAGTGT
TACTGTGCAAAGAAGCACCCACGTGTGATTTCAGGGCATTCAACAGAGGAGGAAATCAAATCGT
CTTTCCTAGAGACATTAAAAGACGCCTGCAGCAAGCCTGATGAAGTTTCGTACGGTGAATTTGA
AGATTATTATGAAGGCCTAAGTGTAGGGATAGCAGGCGATGAAGACTTTGTCAATATCTTATGT
ACTCCATGGGGAATTTAGTTTTCAATAATGCACATTCTCACCGGCACCAAGCATTTCATAGTTA
ATATGCACTTTACATAAAATATGATCAGCTTGTAATATATTTTCTAAGATTCTTTTTAACTTTC
TTTAAAAGTGAAGTCTGGAAAGGCTAATGCAGAACTCAATATGTGTTTTTGAGCACATATACAT
GCTTATATGTCTAAATGTTTATAAAGACAGTTCTTTTTGCTCATTCTTATCTTATACTTATTAT
ATATCTATTTATTACACTTGTAATACTGATGCTTATTGTATCTCTTATCCTACCAGAATAAGAT
GGTCCTTATTCTTATATATTATACTCCTTACACTTATTTTAGAAAAGTAGTTAAAATTTAGCCT
TAATAGAAAAGTAACATTTTCATCAAACTCTATGAGGGCTTATATAGTGATCCTTTTTTGTCCT
TTCTCAATTTTCTTATAACCTTTCTCTAGAATACAGTTGCCACCATTCTCAATTTAATGATGTG
GGATTCAGATCAAGGCTGTAGTAGTTAGTGCAACTTGTTTGAAAGGTGAAAATATCCAGATATT
TGTAAAAGCAATGTTAAAGTCAGTATGATTATGGGTGTTTTCTATGCATTGTATTTCAAATGGT
TGGTGTTTACTCCTCAATGTTTATTTAAAGAGAATTGGTATTTATTTTTGTCTTCAAAATTATA
TACTACTCTTTGTTCACTTGGAAAAATTACATTTTATTTTCTATTTTAACCGTCATATTATCTG
TATACAAACATTACTTAAAAGTAAACAACAAAATGTAGGAAACCTTGGAGTGTATAAATATCCC
CTTAGACTATTAAATGAATTCTGAAATAATTAAATGATTTTTATACAAAATTTAAAAGCATACT
TTGTATCACAAAATAAAGACATGGTATTCTAAGCACCTCTTCTTGGTATAAGAAACCATCAGAA
CATTTTCTTCTACATATACTCTGTTTAATGGCTTCCTACTCTACGTGCATTCTTTCTACAGTGT
ATTCCTGACTTATCCCTGGATAGAATGTACTGAGTGTTGGAATTACGGATGTGTTAGTTTCTTG
TCTATATTATCAATGCTAATTACCACACGGTAGGGAAGAGAACATGGAAAGAAGGGTGCCAGAG
GAGAAACTTACCAGCCAGAAGTGTAACAGTCTGTCTATTCATCCATC

hide sequence

RefSeq Acc Id:

XM_039079681 ⟹ XP_038935609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,467,602 - 49,525,426 (+)	NCBI
mRatBN7.2	7	47,581,239 - 47,641,598 (+)	NCBI

RefSeq Acc Id:

XM_063264047 ⟹ XP_063120117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,467,320 - 49,525,426 (+)	NCBI

RefSeq Acc Id:

XM_063264048 ⟹ XP_063120118

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,467,606 - 49,525,426 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001382510	(Get FASTA)	NCBI Sequence Viewer
	XP_006241399	(Get FASTA)	NCBI Sequence Viewer
	XP_017450507	(Get FASTA)	NCBI Sequence Viewer
	XP_038935609	(Get FASTA)	NCBI Sequence Viewer
	XP_063120117	(Get FASTA)	NCBI Sequence Viewer
	XP_063120118	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16713	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035894.3
	ENSRNOP00000069988.2
	ENSRNOP00000078561
	ENSRNOP00000078561.1
	ENSRNOP00000087148
	ENSRNOP00000087148.1

RefSeq Acc Id:	XP_006241399 ⟸ XM_006241337
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GEU7 (UniProtKB/TrEMBL), A0A0G2JWR8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLEVKGVAAARSQTQLYSGRKNSLKQGWTSRSWAIQNSCLPMVPPLDLGSLVDSDEEDKFSPA PRGTVHDAPRSQPTLSYIMPCQRPYIQHHLNEAEQDTIPEDLPAPTGKYKLKYQQYASEMKDGY KQYIQRSAEKPKPGKGPEANKKVEGACLDDLITLDRKALLQQGYADSPYHRRSSAKKSDVETVA LEKKRQTVAEQMMVDHLSRAVISDPEQDLNTKNQESSHVPPDSERAPLRVRRRTLHETKIRTNS TLTENDLSQKVEFEGRVLSRNGRDACRELIGFFFAHDQSLTVYEYRMFGKNRTSVLPFIKKDVY CHQYGQRKGEQYELGDFYTGATLTFLSCDHPSLPKSIKENALLRLRITSIDQVALDSLKAASAE PGREDPVSQEAQDQLVLQAIQEKLKEQLHTKGVRILTGLGKYFQRLDKEGNGLLEKTDFQQALE TFHLEVSEQDFESSWLILLGHGHSQNKVDYGEFKRAIFGEMNEYRKSFVRKAFMKLDFNKTGTV SVIDIRKCYCAKKHPRVISGHSTEEEIKSSFLETLKDACSKPDEVSYGEFEDYYEGLSVGIAGD EDFVNILCTPWGI hide sequence

RefSeq Acc Id:	XP_017450507 ⟸ XM_017595018
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GEU7 (UniProtKB/TrEMBL), A0A0G2JWR8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLEVKGVAAARSQTQLYSGRKNSLKQGWTSRSWAIQNSCLPMVPPLDLGSLVDSDEEDKFSPA PRGTVHDAPRSQPTLSYIMPCQRPYIQHHLNEAEQDTIPEDLPAPTGKYKLKYQQYASEMKDGY KQYIQRSAEKPKPGKGPEANKKVEGACLDDLITLDRKALLQQGYADSPYHRRSSAKKSDVETVA LEKKRQTVAEQMMVDHLSRAVISDPEQDLNTKNQESSHVPPDSERAPLRVRRRTLHETKIRTNS TLTENDLSQKVEFEGRVLSRNGRDACRELIGFFFAHDQSLTVYEYRMFGKNRTSVLPFIKKDVY CHQYGQRKGEQYELGDFYTGATLTFLSCDHPSLPKSIKENALLRLRITSIDQVALDSLKAASAE PGREDPVSQEAQDQLVLQAIQEKLKEQLHTKGVRILTGLGKYFQRLDKEGNGLLEKTDFQQALE TFHLEVSEQDFESSWLILLGHGHSQNKVDYGEFKRAIFGEMNEYRKSFVRKAFMKLDFNKTGTV SVIDIRKCYCAKKHPRVISGHSTEEEIKSSFLETLKDACSKPDEVSYGEFEDYYEGLSVGIAGD EDFVNILCTPWGI hide sequence

RefSeq Acc Id:

ENSRNOP00000069988 ⟸ ENSRNOT00000087341

RefSeq Acc Id:

ENSRNOP00000035894 ⟸ ENSRNOT00000039141

RefSeq Acc Id:	XP_038935609 ⟸ XM_039079681
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JWR8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000078561 ⟸ ENSRNOT00000105289

RefSeq Acc Id:

ENSRNOP00000087148 ⟸ ENSRNOT00000104446

RefSeq Acc Id:	NP_001382510 ⟸ NM_001395581
- UniProtKB:	A0A8I6G1Z1 (UniProtKB/TrEMBL), A0A0G2JWR8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120117 ⟸ XM_063264047
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6G1Z1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120118 ⟸ XM_063264048
- Peptide Label:	isoform X4
- UniProtKB:	D3ZRP1 (UniProtKB/TrEMBL)

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JWR8-F1-model_v2	AlphaFold	A0A0G2JWR8	1-549	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309826	AgrOrtholog
BioCyc Gene	G2FUF-34099	BioCyc
Ensembl Genes	ENSRNOG00000026600	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039141.3	UniProtKB/TrEMBL
	ENSRNOT00000087341.2	UniProtKB/TrEMBL
	ENSRNOT00000104446.1	UniProtKB/TrEMBL
	ENSRNOT00000105289	ENTREZGENE
	ENSRNOT00000105289.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_Ca-bd	UniProtKB/TrEMBL
NCBI Gene	366891	ENTREZGENE
PANTHER	CALCYPHOSIN	UniProtKB/TrEMBL
	CALCYPHOSIN-2	UniProtKB/TrEMBL
PhenoGen	Caps2	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026600	RatGTEx
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A0G2JWR8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G1Z1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GEU7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZRP1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-15	Caps2	calcyphosine 2	Caps2	calcyphosphine 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Caps2	calcyphosphine 2	Caps2_predicted	calcyphosphine 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Caps2_predicted	calcyphosphine 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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