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Gene: Zfp606 (zinc finger protein 606) Rattus norvegicus

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Symbol:

Zfp606

Name:

zinc finger protein 606

RGD ID:

1309810

Description:

Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF606 (zinc finger protein 606); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC292610; Znf606

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF606 (zinc finger protein 606)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp606 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf606 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF606 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF606 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101954978 (uncharacterized LOC101954978)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC102158443 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF606 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf606 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf606 (zinc finger protein 606)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative))	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF606 (zinc finger protein 606)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF606 (zinc finger protein 606)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp606 (zinc finger protein 606)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp606 (zinc finger protein 606)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	crol	Alliance	DIOPT (Hieranoid\|InParanoid)
Drosophila melanogaster (fruit fly):	crol	Alliance	DIOPT (OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,054,118 - 82,097,574 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	72,981,920 - 73,022,423 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	72,981,989 - 73,008,072 (+)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	1	81,563,501 - 81,590,246 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	85,272,837 - 85,299,629 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	83,113,054 - 83,139,811 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	80,229,592 - 80,256,378 (+)	NCBI		F344_StmMcwi
Rnor_6.0	1	66,229,845 - 66,256,901 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	66,231,763 - 66,254,989 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	67,026,500 - 67,053,171 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	72,566,807 - 72,590,459 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	60,783,929 - 60,810,595 (-)	NCBI		Celera
RGSC_v3.1	1	72,658,180 - 72,668,798 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

substance-related disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

gentamycin (EXP)

geraniol (ISO)

GSK-J4 (ISO)

iron dichloride (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

okadaic acid (ISO)

paracetamol (EXP)

PCB138 (ISO)

phenylmercury acetate (ISO)

potassium chloride (ISO)

potassium dichromate (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

thiram (ISO)

titanium dioxide (ISO)

triadimefon (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleoplasm (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8697448

Genomics

Comparative Map Data

Zfp606
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,054,118 - 82,097,574 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	72,981,920 - 73,022,423 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	72,981,989 - 73,008,072 (+)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	1	81,563,501 - 81,590,246 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	85,272,837 - 85,299,629 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	83,113,054 - 83,139,811 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	80,229,592 - 80,256,378 (+)	NCBI		F344_StmMcwi
Rnor_6.0	1	66,229,845 - 66,256,901 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	66,231,763 - 66,254,989 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	67,026,500 - 67,053,171 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	72,566,807 - 72,590,459 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	60,783,929 - 60,810,595 (-)	NCBI		Celera
RGSC_v3.1	1	72,658,180 - 72,668,798 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

ZNF606
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	57,977,053 - 58,003,346 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	57,977,076 - 58,003,349 (-)	Ensembl			hg38	GRCh38
GRCh37	19	58,488,421 - 58,514,714 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	63,180,252 - 63,206,526 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	63,180,528 - 63,208,125	NCBI
Celera	19	55,531,922 - 55,558,196 (-)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	54,799,593 - 54,825,790 (-)	NCBI		HuRef
CHM1_1	19	58,482,306 - 58,508,543 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	61,073,997 - 61,100,289 (-)	NCBI		T2T-CHM13v2.0

Zfp606
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,212,208 - 12,230,162 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,212,220 - 12,230,162 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	12,478,280 - 12,496,235 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	12,478,293 - 12,496,235 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	13,063,654 - 13,081,584 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	11,384,250 - 11,401,423 (+)	NCBI		MGSCv36	mm8
Celera	7	10,108,086 - 10,126,016 (+)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.52	NCBI

Znf606
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955584	699,005 - 715,087 (-)	Ensembl
ChiLan1.0	NW_004955584	697,831 - 715,748 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF606
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	64,256,318 - 64,282,656 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	66,042,590 - 66,071,145 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	54,988,920 - 55,021,520 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	63,816,742 - 63,849,779 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	63,816,751 - 63,842,318 (-)	Ensembl			panPan2	panpan1.1

ZNF606
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	99,891,865 - 99,916,365 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	99,892,630 - 99,914,350 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	100,248,387 - 100,319,496 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	100,494,387 - 100,565,712 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	100,536,028 - 100,558,442 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	100,139,536 - 100,210,635 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	99,851,943 - 99,922,801 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	100,607,042 - 100,678,155 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101954978
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	153,168 - 173,287 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936897	534,642 - 553,051 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936897	532,116 - 553,557 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC102158443
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	62,695,610 - 62,719,642 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	62,695,595 - 62,739,737 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,292,730 - 57,378,697 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF606
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	50,304,214 - 50,329,513 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	3,560,344 - 3,594,813 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf606
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	492,352 - 509,231 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	489,758 - 518,498 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf606
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	174,489,728 - 174,516,348 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp606
218 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	147
Count of miRNA genes:	124
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000025981, ENSRNOT00000073006
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

RH130550

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	72,995,097 - 72,995,296 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	66,243,285 - 66,243,483	NCBI	Rnor6.0
Rnor_5.0	1	67,039,273 - 67,039,471	UniSTS	Rnor5.0
RGSC_v3.4	1	72,578,189 - 72,578,387	UniSTS	RGSC3.4
Celera	1	60,797,369 - 60,797,567	UniSTS
RH 3.4 Map	1	765.39	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	354	191	11	144	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001063437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_218283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U78141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025981 ⟹ ENSRNOP00000025981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	72,982,206 - 73,008,072 (+)	Ensembl
Rnor_6.0 Ensembl	1	66,231,763 - 66,254,989 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073006 ⟹ ENSRNOP00000067328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	66,232,109 - 66,237,501 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079249 ⟹ ENSRNOP00000074081

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	72,981,989 - 72,985,101 (+)	Ensembl
Rnor_6.0 Ensembl	1	66,253,610 - 66,254,989 (-)	Ensembl

RefSeq Acc Id:

NM_001432048 ⟹ NP_001418977

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,590,246 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,299,629 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,139,811 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,256,378 (+)	NCBI

RefSeq Acc Id:

NM_001432049 ⟹ NP_001418978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,590,246 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,299,629 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,139,811 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,256,378 (+)	NCBI

RefSeq Acc Id:

NM_001432050 ⟹ NP_001418979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,590,246 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,299,629 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,139,811 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,256,378 (+)	NCBI

RefSeq Acc Id:

NM_001432051 ⟹ NP_001418980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,590,246 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,299,629 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,139,811 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,256,378 (+)	NCBI

RefSeq Acc Id:

NM_001432052 ⟹ NP_001418981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,590,246 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,299,629 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,139,811 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,256,378 (+)	NCBI

RefSeq Acc Id:

NM_001432054 ⟹ NP_001418983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,577,342 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,286,695 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,126,889 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,243,444 (+)	NCBI

RefSeq Acc Id:

NM_001432056 ⟹ NP_001418985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,576,985 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,286,338 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,126,532 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,243,087 (+)	NCBI

RefSeq Acc Id:

NM_001432057 ⟹ NP_001418986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,576,985 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,286,338 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,126,532 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,243,087 (+)	NCBI

RefSeq Acc Id:

NM_001432058 ⟹ NP_001418987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,576,985 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,286,338 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,126,532 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,243,087 (+)	NCBI

RefSeq Acc Id:

NM_001432059 ⟹ NP_001418988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	1	81,563,501 - 81,576,985 (+)	NCBI
Lyon_Normotensive	1	85,272,837 - 85,286,338 (+)	NCBI
Lyon_Hypertensive	1	83,113,054 - 83,126,532 (+)	NCBI
F344_StmMcwi	1	80,229,592 - 80,243,087 (+)	NCBI

RefSeq Acc Id:

XM_006228139 ⟹ XP_006228201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,118 - 82,080,258 (+)	NCBI
mRatBN7.2	1	72,981,920 - 73,010,371 (+)	NCBI
Rnor_6.0	1	66,229,845 - 66,256,901 (-)	NCBI
Rnor_5.0	1	67,026,500 - 67,053,171 (-)	NCBI

Sequence:

show sequence

TCGACACTTGGGGGGTGCGGCCGCCATTGTCCCTGGCCAAGGTACCCTCATGGACCAGTCTGAC
CCTTCTGTCTCCTGGGCTCTATGCCCTCAGGATCCAGCATGGCACATAGAGGGAAGCCCTGAGG
AGAGCAGAAGACAGGCAGATGGGCTTCAAACAGCCCAAGACCAGGAACCAGTGACTTTCAAAGA
TGTGGCTGTGGCCTTTACCCAAGAAGAATGGGAGCAGCTAGACCTTGTTCAGCGGACTCTGTAC
CGTGATGTGATGCTAGAGACTTATGGACACCTACTTTCTGTGGGGAATCAGATTGCTAAGCCTG
AAGTCATCTCCCTTTTGGAACAAGAAGAGCCATGGTCACTGGAGCAAGGATATCCTAAGAGCAG
CTGTCCAGAGTGGATGAGAAATGTTGAAAGCAAAGCATTGATTCCAGCACAGAGTGTTTTTGAG
GAAGAACAATCCAGCAATGGAATGGTGTTAGAAAGATACATATGGGATAATCCATGGCTCTCCA
GGTTAGGAGTTTTGGGATATGGAGACCAAATAGAAATGTATCACATGAATCAGAACGCAGGTAT
GAGGGAAATGGTCTTCATGCAAAAACAAGTACTTTCTCAACGAGGTTCTGAATTCTGTAAACTT
GGCACAGAGTACAGCCAAAGCTTAAACTTAATTCCACCTCAAAGAGTTTCTCAATTAGAACATT
TCTACAAATCTGATACACATCTTGAAACTTGGAGATGTAATTCAGCCATAATGTATGCAGACAA
AGTTACCTGTGAAAATATTGATTATGAAAAAGCCTTCTGCCAGTCTGTTCAGCCTGTTTACCCT
GCAAAATTGCAAACTAGAGATAATATGTTCAAATGTACTGATGCTGTGAAGTCTTTCAATCATA
TTATACAGTTTGGTGATCATAAAGCAGTACATACAGGAGAAAAACTCTATGGATATAAGGAATA
CCATCAAATCTTTAACCAGAGCCCATCACTTATTGAACATCCAAGATTTCAAATTGGAGGAAAC
CAGTATGAGAAATATAAAGAGTACGGGAATATCTTTTATTTCTCATCTTTTATGGAACATCAAA
ACATTGGTGGTGTAGAAAAGGCATATAAATATAATGAATGGGAGAAAGTCTTTGGTTATGACTC
ATTACTTGCTCAACATACAAGCACATACACTGCAGAGAAACCCTATGAATTCAACAAATGTGGT
ACATCTTTTATCTGGAGCTCTTACCTTATTCAACATAAGAAAACTCATCCTGGAGATAAACCCT
ATGAATGTGATAAATGCAGAAAAGTTTTTAGGAATCGTTCAGCCCTTACTAAGCATGAACGGAC
TCACACTGGAATAAAACCTTATGAATGTAACAAATGTGGGAAAGCCTTCAGTTGGAATTCTCAT
CTTATTGTACACACAAGAATCCATACAGGAGAAAAACCTTATGTATGTAATGAATGTGGGAAAT
CATTCAACTGGAATTCCCATCTTATTGGGCATCAGAGAACTCATACTGGAGAGAAACCTTTTGA
GTGTACTGAATGTGGCAAGTCTTTTAGCTGGAGTTCCCATCTTATTGCCCATATGCGGATGCAT
ACTGGAGAGAAACCCTTTAAATGTGATGAATGTGAAAAGGCTTTTAGAGATTATTCAGCCCTTA
GTAAACATGAAAGAACTCACTCTGGAGCAAAACCATATAAATGTACTGAGTGTGGAAAGTCCTT
CAGCTGGAGCTCCCATCTTATTGCTCACCAAAGAACTCACACGGGAGAGAAACCTTACAACTGT
CAAGAATGTGGCAAAGCTTTCAGAGAGCGTTCAGCCCTTACAAAACATGAAATTATTCATTCTG
GAATTAAGCCCTATGAATGTAATAAATGTGGAAAATCATGTAGCCAAATGGCCCATCTTGTTAG
GCATCAAAGGACTCATACTGGAGAAAAGCCCTATGAATGCAATAAATGTGGAAAATCCTTCAGT
CAGAGCTGTCACCTTGTTGCTCATCGGAGAATTCACACTGGTGAGAAACCCTATAAATGTAATC
AATGTGAACGATCCTTTAATTGTAGCTCTCACCTAATTGCACACCGGAGAACTCATACTGGAGA
AAAACCATACAGGTGCAATGAGTGTGGGAAGGCATTTAATGAGAGTTCTTCCCTGATTGTACAC
TTGAGAAACCATACTGGAGAGAAACCCTACAAATGTATTCATTGTGAAAAAGCTTTCTGTAAGA
ATTCTTCCCTGATTATTCATCAGAGAATGCATAGTGGAGAGAAACGCTTTATATGCAATCAATG
TGGAAGAGCCTTTAGTGGTCATTCAGCCTTACTTCAACATCAGAAAAATCATAGTGAAGAGAAA
CTGTAACTGAATTGGTCAAAGACTTTTCTTTTATTGTATGTTTAACAACACATTGGGTAGGGGT
GGAAGCCCTATAAGTATAACCAAGAAGGAAGTTTTTCACTAAGAATTCAGTTAAACTGTCTTTA
CTATACAACAGGAAATCTCTTTTTAGAAGAAACTTTGAGTGACAGAAACGAAAAGACTAGGGAA
AAACTTTCAGCAGTTATGTAGCCTGTATTCAATGGTAGGAAATTATAGGAAAAAAAGTTCTAAG
CTTTTTATGTGGTCTGAGGAACATGATTGGGTGAATGCAGTATTCTAGCAAAAGCTCTGATTTG
TAGATCAAGATGTAGAAGTTTGTGCATTACTAAGAGGAAAGTCTTGTGCCAAGAATAGTTAGTG
TTTTAACTGGAAAAATACTACCTGGAATATAGATGGGAAGCTTTGCATTAACATTTTGTGCATA
ATGATAGAAACAGATTTTGCTATTACAAGGGGAGGGTCTAGGTGCTCTTTAAGAGATAGAATAT
GGAATATTAAGTCTGAACTTATGGGGAAAAATTAGTATAGTACTGAGTGGAATATTTACTGTTG
ATCAAGGTTAACCTCTTTAGAAAAAAATTAGTAAATGAGATCACTAATGATAGAAGATAGAAAG
GCTATTGCCTAGAAATATGAAACTGAGTTTTGAAATAGAACCAATACTTAATAATGTAGTGTCA
GTGTCCATTGGTACATATCAGTGAATTATTGGGCAGTTAGCTTATAACTCTTAGGCAATCACTA
TAAATTATAATTGTGGGTACTGGCAATATATGTAATAGAAGAAACAACAGTAAAAAGGACACAA
TTGTACATAAACATCTACTATAACATCTAAAAAAGTGTGTTTGGATAAAGACCTCTTAGATCCA
TGGAGAAATTAACCCAGTTAATTTAAGGGGTTTTTTTGGGGGGGTTGTTTTTGTTTGTTTTGTT
TTACAAATACATAAGCACTTACCATGTGCTAGGCCTCCTTTTAAATTCTTTTTTTTAAAATATT
AACTTGTTCAATTCCCTTAACTCTATGAAGGAGGCATTGTTACTACCGCAGACTTACAAGTGGA
TAAACAGAAGCAGAGATGTTGAATAACTTACCCAGGAGACACAAGAGAGTACAGTTGAGATACT
TTGGCTCCAGAGTGTGTTTTTAACCACTGTGTTTTCTCACTTTTGTTCAATGTTTTTATAATAA
TATTTGATAATAAAATTCAAGAAAATCCTAACTAATGAAAACCTGGTTACCTGGTTCCTATATC
CTGAAGGATTTCTACTAATACGTAAACCACAATCTCTATGGAATATGAACATCTCTGAGAAGGA
CATGGGAAACCACTATGTTTTCTGAGTCCTGGGTTTAAGGGTTATAGACAGGCAGGCAGTGTGA
ACTTGAAAAAGTGTAAGGACTGTCCCTTGGGGGTTCAGAAGTGTCCCCTGAATAAAGCAGAGGC
AAGGGTGTTTGTTCTTTGACATGTTGGAAACTAGTGCCCATTGGCACACCAGTTTTCTAGGTAC
CCTCTGAGTTCATTATTAGCCTATTATCTTCTCTACATGAAATGATAGTTTGATGGGAGGGAGG
ATTCAGGAAGAGAGTTCTGCCTGAGCTTATCATCAGCAGTGAGGAAGTTCCTTTTCAGGAGAAA
AGGAACAAAAGGGATCTATGGACTTAGGCAAGGATTGTTTCTAGATATGCTTCAAGGGTATTGG
GAGAAAATTTGGGGCACATAAGACTCATCTAACTTTTTAGGGTCCTGGACTCCCCCATGGTAAG
AATTGGTGGTATACTATTGTTAAGGTACTATGTTCACCTGTGACTCTTCGAGCTTCAGGCAACT
TAGGATGTAACATTTAGTGCCCTCCTTTGCAGGATCTAATAGTCAATAAATGTTATGGGAAAAA
GTAA

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RefSeq Acc Id:

XM_039100665 ⟹ XP_038956593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,169 - 82,080,258 (+)	NCBI
mRatBN7.2	1	72,981,973 - 73,010,371 (+)	NCBI

RefSeq Acc Id:

XM_039100667 ⟹ XP_038956595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,190 - 82,080,258 (+)	NCBI
mRatBN7.2	1	72,981,973 - 73,010,371 (+)	NCBI

RefSeq Acc Id:

XM_039100670 ⟹ XP_038956598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,174 - 82,080,258 (+)	NCBI
mRatBN7.2	1	72,981,979 - 73,010,371 (+)	NCBI

RefSeq Acc Id:

XM_063277328 ⟹ XP_063133398

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,448 - 82,080,258 (+)	NCBI

RefSeq Acc Id:

XM_063277354 ⟹ XP_063133424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,174 - 82,075,888 (+)	NCBI

RefSeq Acc Id:

XM_063277356 ⟹ XP_063133426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,185 - 82,094,612 (+)	NCBI

RefSeq Acc Id:

XR_010059570

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,448 - 82,094,612 (+)	NCBI

RefSeq Acc Id:

XR_010059571

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,054,448 - 82,097,574 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418977	(Get FASTA)	NCBI Sequence Viewer
	NP_001418978	(Get FASTA)	NCBI Sequence Viewer
	NP_001418979	(Get FASTA)	NCBI Sequence Viewer
	NP_001418980	(Get FASTA)	NCBI Sequence Viewer
	NP_001418981	(Get FASTA)	NCBI Sequence Viewer
	NP_001418983	(Get FASTA)	NCBI Sequence Viewer
	NP_001418985	(Get FASTA)	NCBI Sequence Viewer
	NP_001418986	(Get FASTA)	NCBI Sequence Viewer
	NP_001418987	(Get FASTA)	NCBI Sequence Viewer
	NP_001418988	(Get FASTA)	NCBI Sequence Viewer
	XP_006228201	(Get FASTA)	NCBI Sequence Viewer
	XP_038956593	(Get FASTA)	NCBI Sequence Viewer
	XP_038956595	(Get FASTA)	NCBI Sequence Viewer
	XP_038956598	(Get FASTA)	NCBI Sequence Viewer
	XP_063133398	(Get FASTA)	NCBI Sequence Viewer
	XP_063133424	(Get FASTA)	NCBI Sequence Viewer
	XP_063133426	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB36813	(Get FASTA)	NCBI Sequence Viewer
	EDL75785	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074081.2

RefSeq Acc Id:

XP_006228201 ⟸ XM_006228139

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDQSDPSVSWALCPQDPAWHIEGSPEESRRQADGLQTAQDQEPVTFKDVAVAFTQEEWEQLDLV
QRTLYRDVMLETYGHLLSVGNQIAKPEVISLLEQEEPWSLEQGYPKSSCPEWMRNVESKALIPA
QSVFEEEQSSNGMVLERYIWDNPWLSRLGVLGYGDQIEMYHMNQNAGMREMVFMQKQVLSQRGS
EFCKLGTEYSQSLNLIPPQRVSQLEHFYKSDTHLETWRCNSAIMYADKVTCENIDYEKAFCQSV
QPVYPAKLQTRDNMFKCTDAVKSFNHIIQFGDHKAVHTGEKLYGYKEYHQIFNQSPSLIEHPRF
QIGGNQYEKYKEYGNIFYFSSFMEHQNIGGVEKAYKYNEWEKVFGYDSLLAQHTSTYTAEKPYE
FNKCGTSFIWSSYLIQHKKTHPGDKPYECDKCRKVFRNRSALTKHERTHTGIKPYECNKCGKAF
SWNSHLIVHTRIHTGEKPYVCNECGKSFNWNSHLIGHQRTHTGEKPFECTECGKSFSWSSHLIA
HMRMHTGEKPFKCDECEKAFRDYSALSKHERTHSGAKPYKCTECGKSFSWSSHLIAHQRTHTGE
KPYNCQECGKAFRERSALTKHEIIHSGIKPYECNKCGKSCSQMAHLVRHQRTHTGEKPYECNKC
GKSFSQSCHLVAHRRIHTGEKPYKCNQCERSFNCSSHLIAHRRTHTGEKPYRCNECGKAFNESS
SLIVHLRNHTGEKPYKCIHCEKAFCKNSSLIIHQRMHSGEKRFICNQCGRAFSGHSALLQHQKN
HSEEKL

hide sequence

Ensembl Acc Id:

ENSRNOP00000074081 ⟸ ENSRNOT00000079249

Ensembl Acc Id:

ENSRNOP00000067328 ⟸ ENSRNOT00000073006

Ensembl Acc Id:

ENSRNOP00000025981 ⟸ ENSRNOT00000025981

RefSeq Acc Id:	XP_038956593 ⟸ XM_039100665
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038956595 ⟸ XM_039100667
- Peptide Label:	isoform X1
- UniProtKB:	G3V8H6 (UniProtKB/TrEMBL), A6KQN5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038956598 ⟸ XM_039100670
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063133424 ⟸ XM_063277354
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063133426 ⟸ XM_063277356
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063133398 ⟸ XM_063277328
- Peptide Label:	isoform X1

RefSeq Acc Id:

NP_001418977 ⟸ NM_001432048

RefSeq Acc Id:

NP_001418979 ⟸ NM_001432050

RefSeq Acc Id:

NP_001418978 ⟸ NM_001432049

RefSeq Acc Id:

NP_001418980 ⟸ NM_001432051

RefSeq Acc Id:

NP_001418981 ⟸ NM_001432052

RefSeq Acc Id:

NP_001418983 ⟸ NM_001432054

RefSeq Acc Id:

NP_001418986 ⟸ NM_001432057

RefSeq Acc Id:

NP_001418985 ⟸ NM_001432056

RefSeq Acc Id:

NP_001418987 ⟸ NM_001432058

RefSeq Acc Id:

NP_001418988 ⟸ NM_001432059

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V8H6-F1-model_v2	AlphaFold	G3V8H6	1-787	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689680

Promoter ID:

EPDNEW_R203

Type:

single initiation site

Name:

Zfp606_1

Description:

zinc finger protein 606

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	66,255,053 - 66,255,113	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309810	AgrOrtholog
BioCyc Gene	G2FUF-60735	BioCyc
Ensembl Genes	ENSRNOG00000019127	Ensembl
	ENSRNOG00000079146	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079249.3	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	C2H2-ZF_domain	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	292610	ENTREZGENE
PANTHER	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	UniProtKB/TrEMBL
	GENE, 19965-RELATED	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp606	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019127	RatGTEx
	ENSRNOG00000079146	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K765_RAT	UniProtKB/TrEMBL
	A6KQN5	ENTREZGENE, UniProtKB/TrEMBL
	G3V8H6	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-19	Zfp606	zinc finger protein 606	Znf606	zinc finger protein 606	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Znf606	zinc finger protein 606	Zfp606	zinc finger protein 606	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Zfp606	zinc finger protein 606	Zfp606_predicted	zinc finger protein 606 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp606_predicted	zinc finger protein 606 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD