LOC102158443 (zinc finger protein 606) - Rat Genome Database

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Gene: LOC102158443 (zinc finger protein 606) Sus scrofa
Analyze
Symbol: LOC102158443 (Ensembl: ZNF606)
Name: zinc finger protein 606
RGD ID: 14171832
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH genetic disease (ortholog); substance-related disorder (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ZNF606
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl662,695,610 - 62,719,642 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1662,695,595 - 62,739,737 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,292,730 - 57,378,697 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC102158443
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl662,695,610 - 62,719,642 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1662,695,595 - 62,739,737 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,292,730 - 57,378,697 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF606
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381957,977,053 - 58,003,346 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1957,977,076 - 58,003,349 (-)EnsemblGRCh38hg38GRCh38
GRCh371958,488,421 - 58,514,714 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,180,252 - 63,206,526 (-)NCBINCBI36Build 36hg18NCBI36
Build 341963,180,528 - 63,208,125NCBI
Celera1955,531,922 - 55,558,196 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1954,799,593 - 54,825,790 (-)NCBIHuRef
CHM1_11958,482,306 - 58,508,543 (-)NCBICHM1_1
T2T-CHM13v2.01961,073,997 - 61,100,289 (-)NCBIT2T-CHM13v2.0
Zfp606
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,212,208 - 12,230,162 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,212,220 - 12,230,162 (+)EnsemblGRCm39 Ensembl
GRCm38712,478,280 - 12,496,235 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,478,293 - 12,496,235 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,063,654 - 13,081,584 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,384,250 - 11,401,423 (+)NCBIMGSCv36mm8
Celera710,108,086 - 10,126,016 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.52NCBI
Zfp606
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,054,118 - 82,097,574 (+)NCBIGRCr8
mRatBN7.2172,981,920 - 73,022,423 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl172,981,989 - 73,008,072 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0166,229,845 - 66,256,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,231,763 - 66,254,989 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,026,500 - 67,053,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,566,807 - 72,590,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,658,180 - 72,668,798 (+)NCBI
Celera160,783,929 - 60,810,595 (-)NCBICelera
Cytogenetic Map1q21NCBI
Znf606
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955584699,005 - 715,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955584697,831 - 715,748 (-)NCBIChiLan1.0ChiLan1.0
ZNF606
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,256,318 - 64,282,656 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,042,590 - 66,071,145 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01954,988,920 - 55,021,520 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11963,816,742 - 63,849,779 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1963,816,751 - 63,842,318 (-)Ensemblpanpan1.1panPan2
ZNF606
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,891,865 - 99,916,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,892,630 - 99,914,350 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1100,248,387 - 100,319,496 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,494,387 - 100,565,712 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1100,536,028 - 100,558,442 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11100,139,536 - 100,210,635 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,851,943 - 99,922,801 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,607,042 - 100,678,155 (+)NCBIUU_Cfam_GSD_1.0
Znf606
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409349153,168 - 173,287 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936897534,642 - 553,051 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936897532,116 - 553,557 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF606
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,304,214 - 50,329,513 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660453,560,344 - 3,594,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf606
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624832492,352 - 509,231 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624832489,758 - 518,498 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LOC102158443
535 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 2 21 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000061223   ⟹   ENSSSCP00000057623
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl662,695,610 - 62,719,642 (-)Ensembl
RefSeq Acc Id: XM_005664934   ⟹   XP_005664991
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,695,604 - 62,739,736 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998895   ⟹   XP_013854349
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,695,604 - 62,739,736 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998897   ⟹   XP_013854351
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,695,604 - 62,739,736 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998898   ⟹   XP_013854352
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,695,604 - 62,739,737 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998899   ⟹   XP_013854353
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,695,595 - 62,717,379 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013854353   ⟸   XM_013998899
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013854352   ⟸   XM_013998898
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005664991   ⟸   XM_005664934
- Peptide Label: isoform X1
- UniProtKB: F1SC26 (UniProtKB/TrEMBL),   A0A8D0VP68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013854351   ⟸   XM_013998897
- Peptide Label: isoform X1
- UniProtKB: F1SC26 (UniProtKB/TrEMBL),   A0A8D0VP68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013854349   ⟸   XM_013998895
- Peptide Label: isoform X1
- UniProtKB: F1SC26 (UniProtKB/TrEMBL),   A0A8D0VP68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000057623   ⟸   ENSSSCT00000061223
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003995 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015054243 UniProtKB/TrEMBL
  ENSSSCG00030015014 UniProtKB/TrEMBL
  ENSSSCG00035059940 UniProtKB/TrEMBL
  ENSSSCG00045003593 UniProtKB/TrEMBL
  ENSSSCG00050054769 UniProtKB/TrEMBL
  ENSSSCG00055022516 UniProtKB/TrEMBL
  ENSSSCG00065027627 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000061223 ENTREZGENE
  ENSSSCT00000061223.3 UniProtKB/TrEMBL
  ENSSSCT00015072479.1 UniProtKB/TrEMBL
  ENSSSCT00030020724.1 UniProtKB/TrEMBL
  ENSSSCT00035080334.1 UniProtKB/TrEMBL
  ENSSSCT00045005882.1 UniProtKB/TrEMBL
  ENSSSCT00050074706.1 UniProtKB/TrEMBL
  ENSSSCT00055044174.1 UniProtKB/TrEMBL
  ENSSSCT00055044267.1 UniProtKB/TrEMBL
  ENSSSCT00065037212.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:102158443 UniProtKB/TrEMBL
NCBI Gene LOC102158443 ENTREZGENE
PANTHER IP01201P-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8D0VP68 ENTREZGENE, UniProtKB/TrEMBL
  F1SC26 ENTREZGENE, UniProtKB/TrEMBL