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Gene: Cd300lf (Cd300 molecule-like family member F) Rattus norvegicus

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Symbol:

Cd300lf

Name:

Cd300 molecule-like family member F

RGD ID:

1309733

Description:

Predicted to enable several functions, including interleukin-4 receptor binding activity; phosphatidylserine binding activity; and virus receptor activity. Predicted to be involved in several processes, including interleukin-13-mediated signaling pathway; regulation of apoptotic cell clearance; and regulation of innate immune response. Predicted to act upstream of or within osteoclast differentiation. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human CD300LF (CD300 molecule like family member f); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CD300 antigen like family member F; CD300 antigen-like family member F; CD300f; CLM-1; CMRF35-like molecule 1; LOC287818; RGD1309733; similar to DC-derived Ig-like receptor 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	100,858,924 - 100,875,111 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	100,858,924 - 100,875,022 (-)	Ensembl				GRCr8
mRatBN7.2	10	100,359,942 - 100,376,130 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	100,359,943 - 100,376,041 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	105,419,935 - 105,436,045 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	104,882,996 - 104,899,108 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	100,280,933 - 100,297,034 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	103,669,781 - 103,690,584 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	103,670,028 - 103,687,425 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	104,617,431 - 104,633,534 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	105,192,308 - 105,209,016 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	98,936,322 - 98,952,490 (-)	NCBI		Celera
RGSC_v3.1	10	105,206,811 - 105,223,520 (-)	NCBI
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxynon-2-enal (ISO)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

gardiquimod (ISO)

genistein (ISO)

hydrogen peroxide (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

ozone (ISO)

phenobarbital (ISO)

phenylarsine oxide (ISO)

pirinixic acid (ISO)

protein kinase inhibitor (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

immune response-activating signaling pathway (IBA)

immune system process (IEA)

interleukin-13-mediated signaling pathway (ISO,ISS)

negative regulation of apoptotic cell clearance (ISO,ISS)

negative regulation of mast cell activation (ISO,ISS)

negative regulation of MyD88-dependent toll-like receptor signaling pathway (ISO,ISS)

osteoclast differentiation (ISO)

positive regulation of apoptotic cell clearance (ISO,ISS)

positive regulation of interleukin-4-mediated signaling pathway (ISO,ISS)

symbiont entry into host cell (IEA)

TRIF-dependent toll-like receptor signaling pathway (ISO,ISS)

Cellular Component

plasma membrane (IBA,IEA)

Molecular Function

ceramide binding (ISO,ISS)

identical protein binding (ISO)

interleukin-4 receptor binding (ISO,ISS)

lipid binding (IEA)

phosphatidylserine binding (ISO,ISS)

protein binding (ISO)

transmembrane signaling receptor activity (IBA)

virus receptor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14662855	PMID:15489334	PMID:21865548	PMID:22043923	PMID:23123064	PMID:24035150	PMID:26124135	PMID:26768664	PMID:27540007	PMID:27681626

Genomics

Comparative Map Data

Cd300lf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	100,858,924 - 100,875,111 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	100,858,924 - 100,875,022 (-)	Ensembl				GRCr8
mRatBN7.2	10	100,359,942 - 100,376,130 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	100,359,943 - 100,376,041 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	105,419,935 - 105,436,045 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	104,882,996 - 104,899,108 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	100,280,933 - 100,297,034 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	103,669,781 - 103,690,584 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	103,670,028 - 103,687,425 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	104,617,431 - 104,633,534 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	105,192,308 - 105,209,016 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	98,936,322 - 98,952,490 (-)	NCBI		Celera
RGSC_v3.1	10	105,206,811 - 105,223,520 (-)	NCBI
Cytogenetic Map	10	q32.1	NCBI

CD300LF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	74,694,317 - 74,712,923 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	74,694,308 - 74,712,981 (-)	Ensembl			hg38	GRCh38
GRCh37	17	72,690,456 - 72,709,062 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	70,202,047 - 70,220,703 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	69,283,430 - 69,302,299 (-)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	68,099,344 - 68,117,994 (-)	NCBI		HuRef
CHM1_1	17	72,755,167 - 72,773,817 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	75,585,036 - 75,603,637 (-)	NCBI		T2T-CHM13v2.0

Cd300lf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	115,007,040 - 115,024,834 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	115,007,040 - 115,024,818 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	115,116,214 - 115,135,372 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	115,116,214 - 115,133,992 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	114,977,528 - 114,995,306 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	114,932,308 - 114,950,047 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	116,004,510 - 116,022,249 (-)	NCBI		MGSCv36	mm8
Celera	11	126,881,268 - 126,898,514 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	80.59	NCBI

Cd300lf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955553	1,488,501 - 1,610,555 (-)	Ensembl
ChiLan1.0	NW_004955553	1,596,406 - 1,610,479 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100977992
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	90,708,290 - 90,751,987 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	95,537,723 - 95,574,692 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	68,638,855 - 68,658,017 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	74,197,131 - 74,215,038 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	74,197,131 - 74,215,038 (-)	Ensembl			panPan2	panpan1.1

CD300LF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	5,700,915 - 5,714,868 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	6,380,206 - 6,394,146 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	6,372,867 - 6,386,842 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	6,373,036 - 6,445,136 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	6,409,628 - 6,423,621 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	6,520,312 - 6,534,278 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	6,580,677 - 6,594,632 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CD300LF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	6,501,151 - 6,521,135 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	6,490,151 - 6,510,003 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD300LF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	46,944,701 - 46,963,559 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	46,944,921 - 46,962,770 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	17,729,380 - 17,748,450 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cd300lf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	4,573,010 - 4,587,592 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624801	4,573,010 - 4,587,632 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cd300lf
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	68,966,742 - 68,982,760 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cd300lf
33 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	78
Count of miRNA genes:	68
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000039284
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	97202388	107556066	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	97202388	107556066	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	62	157	91	90	59	90	59	6	344	185	11	130	76	91	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC093593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU057984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU062903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HQ263412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039284 ⟹ ENSRNOP00000033887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,858,924 - 100,875,022 (-)	Ensembl
mRatBN7.2 Ensembl	10	100,359,943 - 100,376,041 (-)	Ensembl
Rnor_6.0 Ensembl	10	103,670,028 - 103,687,425 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000064284 ⟹ ENSRNOP00000059445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	100,360,631 - 100,376,006 (-)	Ensembl
Rnor_6.0 Ensembl	10	103,670,470 - 103,685,844 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098715 ⟹ ENSRNOP00000078696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	100,360,610 - 100,369,818 (-)	Ensembl

RefSeq Acc Id:

NM_001025111 ⟹ NP_001020282

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,022 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,041 (-)	NCBI
Rnor_6.0	10	103,669,781 - 103,685,879 (-)	NCBI
Rnor_5.0	10	104,617,431 - 104,633,534 (+)	NCBI
RGSC_v3.4	10	105,192,308 - 105,209,016 (-)	RGD
Celera	10	98,936,322 - 98,952,490 (-)	RGD

Sequence:

show sequence

CATGTAGCCTGCTCTTGCTGGCAGGCTCCCCCAAGGTGATCCGGTGAGAGAAGATGCATTTGTC
ATTGCTGGCTCTCTTTCTCTTCTGGATCTCAGGCTGCTTCACTGCTCAGGATCCAGTCACAGGT
CCAGAGGAGGTGAGCGGTTACGAGCAGGGCTCCCTGACAGTGTGGTGTCGATATGGCTCATGGT
GGAAGGATTACAGCAAGTACTGGTGCCGAGGACCTAAGAGGAGTTCCTGTGAGATTCGAGTTGA
AACCGATGCATCAGAGCGCTTGGTGAAGGAGAACCATGTGTCCATCAGGGACGACCAGACAAAC
TTCACCTTCACAGTGACCATGGAGGACCTGAGGATGAGCGATGCTGGCATTTACTGGTGTGGAA
TTACAAAGGCTGGATATGATCACATGTTTAAAGTTCATGTGAGCATTAACCCAGTGCCAACAAC
GCCCACCACCACCTCCACCACCACCATCTTCACAGTGACAACCACTGTAAAAGAGACCAGCACG
CTTTCAACGCAGACCAGCCACTACTCTGATAACAGGTATGACAGTGGTGGTGTCGGCGACGGTA
ATGGGTTTCTGGATCTCAGCGTGCTCCTCCCAGTCATCTCTGCAGCCCTGTTGCTTCTCTTGCT
GGTGGTCTCACTAATTGCTTGGAGGATGGTGAGGAGACAGAAGAAAGCTGCTGGACCACCCTCA
GGGCAGGCTGATTCTGTGACTCACATCTTGTGTCCCCCCAAACCCCATGTACAGCCTCTGGAGG
ATGATCTCTGTTATGCAAACCTGTCACTGCAGCAGCCCAGAACCTCCCCTTTGAAAAAGGGCTC
CTCCATGTCCTCCTCTGGCAAGGACCACCAAGAGGAAGTGGAATACGTCACCATGGCTCCCTTC
CCTAGGGAGGAGATTTCATACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAGGAACCTACTTACA
GCAACACTGCCTGCCTTGTCACCCATGGTCCCAGGACAAACCTTGGAGAGGAGACCACAGAGTA
CAGCAGCATCAGGAGGCCCATGCCTTGATCTTGGTCCCTGAAGGTGGCCCGGGAGCATGCGTTT
GCACATCGGCCTCTGTGCCTGCTTCCTTACCAGGCCTGGCGGGCGACTGAAACTCTGAACGTTC
ATCTCTCATGGTCTTCAGCTCTACCTTGAGCTTGGAGTTCAGCCTTGGGGGGCTCCAGTGAATT
AAGGCTCCTTCCACATCTCTCCACATAGAGCCAACGCACCTTGGAAGGTACCAGGCAGGCTGCT
TCAGGGATGCTGTGTAATTCATAACGGTGGCAATAATAATGGCAACCAACCTTTATTTATTGTT
ATTCATACGGGTGCCCCTCCCGGACATTTTCATCCTCATACCCAAAATCTGTGAATTATTCTTA
CAAAGGAAGACAGATATATATGTGTTTAAGTTAGGGATTTTGAGATTTAAGTCTGTTATTATCC
AAGTAGGTCCCATATAAAGCTACAAGGGTCCCTTTAAAGGGGAATAGAGCAAGTCAGAGAAAAA
GGGGGAGGGGGAGGGGAGAGGAAGGGAGAAAGAGGGGAGGAGAGAGAGGGGGTGGAGAGAGGCG
ACAACAGAAGCAGAAGGTGGAGGGATACAGCAGGAGCCAGGATGCTGTGCGTCCAGCAGTCAAC
CAAGACAAGTATCAGACAGACCCCTGGGTGGGACATCTTAGAGCCATTAGTCCTGCTAGGGTTG
TTGAATTGACTGTGTACTTTCAGAATTGTACAAGAATAAAGCTGTATTGTTTTCATTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGG

hide sequence

RefSeq Acc Id:

NM_001394215 ⟹ NP_001381144

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,022 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,041 (-)	NCBI

RefSeq Acc Id:

XM_008768337 ⟹ XP_008766559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,111 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,130 (-)	NCBI
Rnor_6.0	10	103,670,022 - 103,688,342 (-)	NCBI

Sequence:

show sequence

CACATGTGTGATTGTTACATGTGCTTGTGAAATCCAGAAGAGTACATTAGCGTCCTTGGAGCTG
GGATAATAGATGGTTATGAGCTGTCTGACATGACACTGGGAACCAATCTCAGTCTACCGGAAGA
GCACTGTGCCCTTTTAAATACTGAACCATCCCTCTGCCCCCTATTTTTAATTTTGTATGTCTTT
CTATGTCTGTGTATGGGTAGTACACGTGAGTGCAGGTACCCAGGGAGGCCAGAAGAGGGCCTTG
GGTCCCCTCGAGTTACAGTTACAAGTGAGCCATTGTAGGTGCTGGGAACTGAACCTGGGTTCTC
TACAGGGCAGTATGTGGTTTTAACTGCTAAGGTATCTCTCCAGCCCCAGCCTTTGGCTATTGGT
CACCATAGTCTACTTTTTTCCTTTTAAAGTTGCGTTTGTTTACTTATTTATTTACCCCTATGGA
TAGCACACAGATGCACACAAACACACGTGCACATATCCACACACATGGATGGACGCATGTACGC
ATAGCATTGCATGTCACATACAGGCACTATAGGAGTGTACACAGCTCTCTCCACAAATAATATA
CACAATGTGCACACGTGCACACACACACTTTGAACACACATAGTGCTTTGGGGAAGGGAGAGTC
TTCGGTGTTCTGTTCTACAGGAGCTCATGTCTAGCCTGGAACTTACTATGTAGTTGAGACTGGC
CTTGAATTGCTGACCTTCAGGTGTGCACCACTATGAATGGCTTCAGTGCCCTGTTTCACCAATG
GGGACATGGCAGCCTGGGTGGGCTGGGGGTAGGGTAACTGAGTTATGGAGAAATCAATGACCCA
GCCGTATCTGGGGTCTCCAATGGGTCTCTCAGAATCCAAAGGCCCCCTGTTTAAGAGGCAGTCT
CGCTATAATTCACAGAGGCTTGGATTAGTCAGTGTTCCTGATTCACAGAGTGGTCCTCCATCTT
GGATGGTCCAGTTTGAGAGGACCAGGATCAAAGGATCTGGTCATTGGCTCCTGTCTGTCAGGCA
GTTCTGCTTTTTATTTTTCCCCTCTTTCTACCTCTGCTCAGTCAGTCCTAGACCCTCCATGAGC
ATGTCCCCGTCGTTTTCAGGGTTTCCCTAGTCTGTTGACCACTCCCCTGAAAGGCATCTACATG
TTGTGGGGGAGGAGAAGGACGCTTCTCTTGCTGCACCCTGGGAAGAAACCTGTTTGATCCACAG
CCGGGAAGTGGCTAAAGGAGGAAGTAACAGAGTGAGAGTGAGGGAAATCAGAGGCCCAGGAGAC
TCAGGAGTGGAGCATGTAGCCTGCTCTTGCTGGCAGGCTCCCCCAAGGTGATCCGGTGAGAGAA
GATGCATTTGTCATTGCTGGCTCTCTTTCTCTTCTGGATCTCAGGCTGCTTCACTGCTCAGGAT
CCAGTCACAGGTCCAGAGGAGGTGAGCGGTTACGAGCAGGGCTCCCTGACAGTGTGGTGTCGAT
ATGGCTCATGGTGGAAGGATTACAGCAAGTACTGGTGCCGAGGACCTAAGAGGAGTTCCTGTGA
GATTCGAGTTGAAACCGATGCATCAGAGCGCTTGGTGAAGGAGAACCATGTGTCCATCAGGGAC
GACCAGACAAACTTCACCTTCACAGTGACCATGGAGGACCTGAGGATGAGCGATGCTGGCATTT
ACTGGTGTGGAATTACAAAGGCTGGATATGATCACATGTTTAAAGTTCATGTGAGCATTAACCC
AGTGCCAACAACGCCCACCACCACCTCCACCACCACCATCTTCACAGTGACAACCACTGTAAAA
GAGACCAGCACGCTTTCAACGCAGACCAGCCACTACTCTGATAACAGGTATGACAGTGGTGGTG
TCGGCGACGGTAATGGGTTTCTGGATCTCAGCGTGCTCCTCCCAGTCATCTCTGCAGCCCTGTT
GCTTCTCTTGCTGGTGGTCTCACTAATTGCTTGGAGGATGGTGAGGAGACAGAAGAAAGCTGCT
GGACCACCCTCAGGGCAGGTAAAAGTGTCCCAGAGGCCAGACGAAGAGACCAGCAGGCTTCTCT
CTCCCTCTTTTCCTTGTTTTTTCACCTCTTTGGAGCCTCCTCTGGAGGATGATCTCTGTTATGC
AAACCTGTCACTGCAGCAGCCCAGAACCTCCCCTTTGAAAAAGGGCTCCTCCATGTCCTCCTCT
GGCAAGGACCACCAAGAGGAAGTGGAATACGTCACCATGGCTCCCTTCCCTAGGGAGGAGATTT
CATACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAGGAACCTACTTACAGCAACACTGCCTGCCT
TGTCACCCATGGTCCCAGGACAAACCTTGGAGAGGAGACCACAGAGTACAGCAGCATCAGGAGG
CCCATGCCTTGATCTTGGTCCCTGAAGGTGGCCCGGGAGCATGCGTTTGCACATCGGCCTCTGT
GCCTGCTTCCTTACCAGGCCTGGCGGGCGACTGAAACTCTGAACGTTCATCTCTCATGGTCTTC
AGCTCTACCTTGAGCTTGGAGTTCAGCCTTGGGGGGCTCCAGTGAATTAAGGCTCCTTCCACAT
CTCTCCACATAGAGCCAACGCACCTTGGAAGGTACCAGGCAGGCTGCTTCAGGGATGCTGTGTA
ATTCATAACGGTGGCAATAATAATGGCAACCAACCTTTATTTATTGTTATTCATACGGGTGCCC
CTCCCGGACATTTTCATCCTCATACCCAAAATCTGTGAATTATTCTTACAAAGGAAGACAGATA
TATATGTGTTTAAGTTAGGGATTTTGAGATTTAAGTCTGTTATTATCCAAGTAGGTCCCATATA
AAGCTACAAGGGTCCCTTTAAAGGGGAATAGAGCAAGTCAGAGAAAAAGGGGGAGGGG

hide sequence

RefSeq Acc Id:

XM_008768338 ⟹ XP_008766560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,111 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,130 (-)	NCBI
Rnor_6.0	10	103,670,022 - 103,688,341 (-)	NCBI

Sequence:

show sequence

ACATGTGTGATTGTTACATGTGCTTGTGAAATCCAGAAGAGTACATTAGCGTCCTTGGAGCTGG
GATAATAGATGGTTATGAGCTGTCTGACATGACACTGGGAACCAATCTCAGTCTACCGGAAGAG
CACTGTGCCCTTTTAAATACTGAACCATCCCTCTGCCCCCTATTTTTAATTTTGTATGTCTTTC
TATGTCTGTGTATGGGTAGTACACGTGAGTGCAGGTACCCAGGGAGGCCAGAAGAGGGCCTTGG
GTCCCCTCGAGTTACAGTTACAAGTGAGCCATTGTAGGTGCTGGGAACTGAACCTGGGTTCTCT
ACAGGGCAGTATGTGGTTTTAACTGCTAAGGTATCTCTCCAGCCCCAGCCTTTGGCTATTGGTC
ACCATAGTCTACTTTTTTCCTTTTAAAGTTGCGTTTGTTTACTTATTTATTTACCCCTATGGAT
AGCACACAGATGCACACAAACACACGTGCACATATCCACACACATGGATGGACGCATGTACGCA
TAGCATTGCATGTCACATACAGGCACTATAGGAGTGTACACAGCTCTCTCCACAAATAATATAC
ACAATGTGCACACGTGCACACACACACTTTGAACACACATAGTGCTTTGGGGAAGGGAGAGTCT
TCGGTGTTCTGTTCTACAGGAGCTCATGTCTAGCCTGGAACTTACTATGTAGTTGAGACTGGCC
TTGAATTGCTGACCTTCAGGTGTGCACCACTATGAATGGCTTCAGTGCCCTGTTTCACCAATGG
GGACATGGCAGCCTGGGTGGGCTGGGGGTAGGGTAACTGAGTTATGGAGAAATCAATGACCCAG
CCGTATCTGGGGTCTCCAATGGGTCTCTCAGAATCCAAAGGCCCCCTGTTTAAGAGGCAGTCTC
GCTATAATTCACAGAGGCTTGGATTAGTCAGTGTTCCTGATTCACAGAGTGGTCCTCCATCTTG
GATGGTCCAGTTTGAGAGGACCAGGATCAAAGGATCTGGTCATTGGCTCCTGTCTGTCAGGCAG
TTCTGCTTTTTATTTTTCCCCTCTTTCTACCTCTGCTCAGTCAGTCCTAGACCCTCCATGAGCA
TGTCCCCGTCGTTTTCAGGGTTTCCCTAGTCTGTTGACCACTCCCCTGAAAGGCATCTACATGT
TGTGGGGGAGGAGAAGGACGCTTCTCTTGCTGCACCCTGGGAAGAAACCTGTTTGATCCACAGC
CGGGAAGTGGCTAAAGGAGGAAGTAACAGAGTGAGAGTGAGGGAAATCAGAGGCCCAGGAGACT
CAGGAGTGGAGCATGTAGCCTGCTCTTGCTGGCAGGCTCCCCCAAGGTGATCCGGTGAGAGAAG
ATGCATTTGTCATTGCTGGCTCTCTTTCTCTTCTGGATCTCAGGCTGCTTCACTGCTCAGGATC
CAGTCACAGGTCCAGAGGAGGTGAGCGGTTACGAGCAGGGCTCCCTGACAGTGTGGTGTCGATA
TGGCTCATGGTGGAAGGATTACAGCAAGTACTGGTGCCGAGGACCTAAGAGGAGTTCCTGTGAG
ATTCGAGTTGAAACCGATGCATCAGAGCGCTTGGTGAAGGAGAACCATGTGTCCATCAGGGACG
ACCAGACAAACTTCACCTTCACAGTGACCATGGAGGACCTGAGGATGAGCGATGCTGGCATTTA
CTGGTGTGGAATTACAAAGGCTGGATATGATCACATGTTTAAAGTTCATGTGAGCATTAACCCA
GTGACAACCACTGTAAAAGAGACCAGCACGCTTTCAACGCAGACCAGCCACTACTCTGATAACA
GGTATGACAGTGGTGGTGTCGGCGACGGTAATGGGTTTCTGGATCTCAGCGTGCTCCTCCCAGT
CATCTCTGCAGCCCTGTTGCTTCTCTTGCTGGTGGTCTCACTAATTGCTTGGAGGATGGTGAGG
AGACAGAAGAAAGCTGCTGGACCACCCTCAGGGCAGGTAAAAGTGTCCCAGAGGCCAGACGAAG
AGACCAGCAGGCTTCTCTCTCCCTCTTTTCCTTGTTTTTTCACCTCTTTGGAGCCTCCTCTGGA
GGATGATCTCTGTTATGCAAACCTGTCACTGCAGCAGCCCAGAACCTCCCCTTTGAAAAAGGGC
TCCTCCATGTCCTCCTCTGGCAAGGACCACCAAGAGGAAGTGGAATACGTCACCATGGCTCCCT
TCCCTAGGGAGGAGATTTCATACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAGGAACCTACTTA
CAGCAACACTGCCTGCCTTGTCACCCATGGTCCCAGGACAAACCTTGGAGAGGAGACCACAGAG
TACAGCAGCATCAGGAGGCCCATGCCTTGATCTTGGTCCCTGAAGGTGGCCCGGGAGCATGCGT
TTGCACATCGGCCTCTGTGCCTGCTTCCTTACCAGGCCTGGCGGGCGACTGAAACTCTGAACGT
TCATCTCTCATGGTCTTCAGCTCTACCTTGAGCTTGGAGTTCAGCCTTGGGGGGCTCCAGTGAA
TTAAGGCTCCTTCCACATCTCTCCACATAGAGCCAACGCACCTTGGAAGGTACCAGGCAGGCTG
CTTCAGGGATGCTGTGTAATTCATAACGGTGGCAATAATAATGGCAACCAACCTTTATTTATTG
TTATTCATACGGGTGCCCCTCCCGGACATTTTCATCCTCATACCCAAAATCTGTGAATTATTCT
TACAAAGGAAGACAGATATATATGTGTTTAAGTTAGGGATTTTGAGATTTAAGTCTGTTATTAT
CCAAGTAGGTCCCATATAAAGCTACAAGGGTCCCTTTAAAGGGGAATAGAGCAAGTCAGAGAAA
AAGGGGGAGGGG

hide sequence

RefSeq Acc Id:

XM_008768339 ⟹ XP_008766561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,107 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,125 (-)	NCBI
Rnor_6.0	10	103,670,022 - 103,688,339 (-)	NCBI

Sequence:

show sequence

ATGTGTGATTGTTACATGTGCTTGTGAAATCCAGAAGAGTACATTAGCGTCCTTGGAGCTGGGA
TAATAGATGGTTATGAGCTGTCTGACATGACACTGGGAACCAATCTCAGTCTACCGGAAGAGCA
CTGTGCCCTTTTAAATACTGAACCATCCCTCTGCCCCCTATTTTTAATTTTGTATGTCTTTCTA
TGTCTGTGTATGGGTAGTACACGTGAGTGCAGGTACCCAGGGAGGCCAGAAGAGGGCCTTGGGT
CCCCTCGAGTTACAGTTACAAGTGAGCCATTGTAGGTGCTGGGAACTGAACCTGGGTTCTCTAC
AGGGCAGTATGTGGTTTTAACTGCTAAGGTATCTCTCCAGCCCCAGCCTTTGGCTATTGGTCAC
CATAGTCTACTTTTTTCCTTTTAAAGTTGCGTTTGTTTACTTATTTATTTACCCCTATGGATAG
CACACAGATGCACACAAACACACGTGCACATATCCACACACATGGATGGACGCATGTACGCATA
GCATTGCATGTCACATACAGGCACTATAGGAGTGTACACAGCTCTCTCCACAAATAATATACAC
AATGTGCACACGTGCACACACACACTTTGAACACACATAGTGCTTTGGGGAAGGGAGAGTCTTC
GGTGTTCTGTTCTACAGGAGCTCATGTCTAGCCTGGAACTTACTATGTAGTTGAGACTGGCCTT
GAATTGCTGACCTTCAGGTGTGCACCACTATGAATGGCTTCAGTGCCCTGTTTCACCAATGGGG
ACATGGCAGCCTGGGTGGGCTGGGGGTAGGGTAACTGAGTTATGGAGAAATCAATGACCCAGCC
GTATCTGGGGTCTCCAATGGGTCTCTCAGAATCCAAAGGCCCCCTGTTTAAGAGGCAGTCTCGC
TATAATTCACAGAGGCTTGGATTAGTCAGTGTTCCTGATTCACAGAGTGGTCCTCCATCTTGGA
TGGTCCAGTTTGAGAGGACCAGGATCAAAGGATCTGGTCATTGGCTCCTGTCTGTCAGGCAGTT
CTGCTTTTTATTTTTCCCCTCTTTCTACCTCTGCTCAGTCAGTCCTAGACCCTCCATGAGCATG
TCCCCGTCGTTTTCAGGGTTTCCCTAGTCTGTTGACCACTCCCCTGAAAGGCATCTACATGTTG
TGGGGGAGGAGAAGGACGCTTCTCTTGCTGCACCCTGGGAAGAAACCTGTTTGATCCACAGCCG
GGAAGTGGCTAAAGGAGGAAGTAACAGAGTGAGAGTGAGGGAAATCAGAGGCCCAGGAGACTCA
GGAGTGGAGCATGTAGCCTGCTCTTGCTGGCAGGCTCCCCCAAGGTGATCCGGTGAGAGAAGAT
GCATTTGTCATTGCTGGCTCTCTTTCTCTTCTGGATCTCAGGCTGCTTCACTGCTCAGGATCCA
GTCACAGGTCCAGAGGAGGTGAGCGGTTACGAGCAGGGCTCCCTGACAGTGTGGTGTCGATATG
GCTCATGGTGGAAGGATTACAGCAAGTACTGGTGCCGAGGACCTAAGAGGAGTTCCTGTGAGAT
TCGAGTTGAAACCGATGCATCAGAGCGCTTGGTGAAGGAGAACCATGTGTCCATCAGGGACGAC
CAGACAAACTTCACCTTCACAGTGACCATGGAGGACCTGAGGATGAGCGATGCTGGCATTTACT
GGTGTGGAATTACAAAGGCTGGATATGATCACATGTTTAAAGTTCATGTGAGCATTAACCCAGC
AACCCAGTCACCCACTACAGTGCCAACAACGCCCACCACCACCTCCACCACCACCATCTTCACA
GTGACAACCACTGTAAAAGAGACCAGCACGCTTTCAACGCAGACCAGCCACTACTCTGATAACA
GGTATGACAGTGGTGGTGTCGGCGACGGTAATGGGTTTCTGGATCTCAGCGTGCTCCTCCCAGT
CATCTCTGCAGCCCTGTTGCTTCTCTTGCTGGTGGTCTCACTAATTGCTTGGAGGATGGTGAGG
AGACAGAAGAAAGCTGCTGGACCACCCTCAGGGCAGCCTCTGGAGGATGATCTCTGTTATGCAA
ACCTGTCACTGCAGCAGCCCAGAACCTCCCCTTTGAAAAAGGGCTCCTCCATGTCCTCCTCTGG
CAAGGACCACCAAGAGGAAGTGGAATACGTCACCATGGCTCCCTTCCCTAGGGAGGAGATTTCA
TACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAGGAACCTACTTACAGCAACACTGCCTGCCTTG
TCACCCATGGTCCCAGGACAAACCTTGGAGAGGAGACCACAGAGTACAGCAGCATCAGGAGGCC
CATGCCTTGATCTTGGTCCCTGAAGGTGGCCCGGGAGCATGCGTTTGCACATCGGCCTCTGTGC
CTGCTTCCTTACCAGGCCTGGCGGGCGACTGAAACTCTGAACGTTCATCTCTCATGGTCTTCAG
CTCTACCTTGAGCTTGGAGTTCAGCCTTGGGGGGCTCCAGTGAATTAAGGCTCCTTCCACATCT
CTCCACATAGAGCCAACGCACCTTGGAAGGTACCAGGCAGGCTGCTTCAGGGATGCTGTGTAAT
TCATAACGGTGGCAATAATAATGGCAACCAACCTTTATTTATTGTTATTCATACGGGTGCCCCT
CCCGGACATTTTCATCCTCATACCCAAAATCTGTGAATTATTCTTACAAAGGAAGACAGATATA
TATGTGTTTAAGTTAGGGATTTTGAGATTTAAGTCTGTTATTATCCAAGTAGGTCCCATATAAA
GCTACAAGGGTCCCTTTAAAGGGGAATAGAGCAAGTCAGAGAAAAAGGGGGAGGGG

hide sequence

RefSeq Acc Id:

XM_008768340 ⟹ XP_008766562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,111 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,129 (-)	NCBI
Rnor_6.0	10	103,670,022 - 103,688,340 (-)	NCBI

Sequence:

show sequence

CATGTGTGATTGTTACATGTGCTTGTGAAATCCAGAAGAGTACATTAGCGTCCTTGGAGCTGGG
ATAATAGATGGTTATGAGCTGTCTGACATGACACTGGGAACCAATCTCAGTCTACCGGAAGAGC
ACTGTGCCCTTTTAAATACTGAACCATCCCTCTGCCCCCTATTTTTAATTTTGTATGTCTTTCT
ATGTCTGTGTATGGGTAGTACACGTGAGTGCAGGTACCCAGGGAGGCCAGAAGAGGGCCTTGGG
TCCCCTCGAGTTACAGTTACAAGTGAGCCATTGTAGGTGCTGGGAACTGAACCTGGGTTCTCTA
CAGGGCAGTATGTGGTTTTAACTGCTAAGGTATCTCTCCAGCCCCAGCCTTTGGCTATTGGTCA
CCATAGTCTACTTTTTTCCTTTTAAAGTTGCGTTTGTTTACTTATTTATTTACCCCTATGGATA
GCACACAGATGCACACAAACACACGTGCACATATCCACACACATGGATGGACGCATGTACGCAT
AGCATTGCATGTCACATACAGGCACTATAGGAGTGTACACAGCTCTCTCCACAAATAATATACA
CAATGTGCACACGTGCACACACACACTTTGAACACACATAGTGCTTTGGGGAAGGGAGAGTCTT
CGGTGTTCTGTTCTACAGGAGCTCATGTCTAGCCTGGAACTTACTATGTAGTTGAGACTGGCCT
TGAATTGCTGACCTTCAGGTGTGCACCACTATGAATGGCTTCAGTGCCCTGTTTCACCAATGGG
GACATGGCAGCCTGGGTGGGCTGGGGGTAGGGTAACTGAGTTATGGAGAAATCAATGACCCAGC
CGTATCTGGGGTCTCCAATGGGTCTCTCAGAATCCAAAGGCCCCCTGTTTAAGAGGCAGTCTCG
CTATAATTCACAGAGGCTTGGATTAGTCAGTGTTCCTGATTCACAGAGTGGTCCTCCATCTTGG
ATGGTCCAGTTTGAGAGGACCAGGATCAAAGGATCTGGTCATTGGCTCCTGTCTGTCAGGCAGT
TCTGCTTTTTATTTTTCCCCTCTTTCTACCTCTGCTCAGTCAGTCCTAGACCCTCCATGAGCAT
GTCCCCGTCGTTTTCAGGGTTTCCCTAGTCTGTTGACCACTCCCCTGAAAGGCATCTACATGTT
GTGGGGGAGGAGAAGGACGCTTCTCTTGCTGCACCCTGGGAAGAAACCTGTTTGATCCACAGCC
GGGAAGTGGCTAAAGGAGGAAGTAACAGAGTGAGAGTGAGGGAAATCAGAGGCCCAGGAGACTC
AGGAGTGGAGCATGTAGCCTGCTCTTGCTGGCAGGCTCCCCCAAGGTGATCCGGTGAGAGAAGA
TGCATTTGTCATTGCTGGCTCTCTTTCTCTTCTGGATCTCAGGCTGCTTCACTGCTCAGGATCC
AGTCACAGGTCCAGAGGAGGTGAGCGGTTACGAGCAGGGCTCCCTGACAGTGTGGTGTCGATAT
GGCTCATGGTGGAAGGATTACAGCAAGTACTGGTGCCGAGGACCTAAGAGGAGTTCCTGTGAGA
TTCGAGTTGAAACCGATGCATCAGAGCGCTTGGTGAAGGAGAACCATGTGTCCATCAGGGACGA
CCAGACAAACTTCACCTTCACAGTGACCATGGAGGACCTGAGGATGAGCGATGCTGGCATTTAC
TGGTGTGGAATTACAAAGGCTGGATATGATCACATGTTTAAAGTTCATGTGAGCATTAACCCAG
GTAAGAGGTATGACAGTGGTGGTGTCGGCGACGGTAATGGGTTTCTGGATCTCAGCGTGCTCCT
CCCAGTCATCTCTGCAGCCCTGTTGCTTCTCTTGCTGGTGGTCTCACTAATTGCTTGGAGGATG
GTGAGGAGACAGAAGAAAGCTGCTGGACCACCCTCAGGGCAGGTAAAAGTGTCCCAGAGGCCAG
ACGAAGAGACCAGCAGGCTTCTCTCTCCCTCTTTTCCTTGTTTTTTCACCTCTTTGGAGCCTCC
TCTGGAGGATGATCTCTGTTATGCAAACCTGTCACTGCAGCAGCCCAGAACCTCCCCTTTGAAA
AAGGGCTCCTCCATGTCCTCCTCTGGCAAGGACCACCAAGAGGAAGTGGAATACGTCACCATGG
CTCCCTTCCCTAGGGAGGAGATTTCATACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAGGAACC
TACTTACAGCAACACTGCCTGCCTTGTCACCCATGGTCCCAGGACAAACCTTGGAGAGGAGACC
ACAGAGTACAGCAGCATCAGGAGGCCCATGCCTTGATCTTGGTCCCTGAAGGTGGCCCGGGAGC
ATGCGTTTGCACATCGGCCTCTGTGCCTGCTTCCTTACCAGGCCTGGCGGGCGACTGAAACTCT
GAACGTTCATCTCTCATGGTCTTCAGCTCTACCTTGAGCTTGGAGTTCAGCCTTGGGGGGCTCC
AGTGAATTAAGGCTCCTTCCACATCTCTCCACATAGAGCCAACGCACCTTGGAAGGTACCAGGC
AGGCTGCTTCAGGGATGCTGTGTAATTCATAACGGTGGCAATAATAATGGCAACCAACCTTTAT
TTATTGTTATTCATACGGGTGCCCCTCCCGGACATTTTCATCCTCATACCCAAAATCTGTGAAT
TATTCTTACAAAGGAAGACAGATATATATGTGTTTAAGTTAGGGATTTTGAGATTTAAGTCTGT
TATTATCCAAGTAGGTCCCATATAAAGCTACAAGGGTCCCTTTAAAGGGGAATAGAGCAAGTCA
GAGAAAAAGGGGGAGGGG

hide sequence

RefSeq Acc Id:

XM_008768342 ⟹ XP_008766564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,106 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,124 (-)	NCBI
Rnor_6.0	10	103,670,022 - 103,688,336 (-)	NCBI

Sequence:

show sequence

TGTGATTGTTACATGTGCTTGTGAAATCCAGAAGAGTACATTAGCGTCCTTGGAGCTGGGATAA
TAGATGGTTATGAGCTGTCTGACATGACACTGGGAACCAATCTCAGTCTACCGGAAGAGCACTG
TGCCCTTTTAAATACTGAACCATCCCTCTGCCCCCTATTTTTAATTTTGTATGTCTTTCTATGT
CTGTGTATGGGTAGTACACGTGAGTGCAGGTACCCAGGGAGGCCAGAAGAGGGCCTTGGGTCCC
CTCGAGTTACAGTTACAAGTGAGCCATTGTAGGTGCTGGGAACTGAACCTGGGTTCTCTACAGG
GCAGTATGTGGTTTTAACTGCTAAGGTATCTCTCCAGCCCCAGCCTTTGGCTATTGGTCACCAT
AGTCTACTTTTTTCCTTTTAAAGTTGCGTTTGTTTACTTATTTATTTACCCCTATGGATAGCAC
ACAGATGCACACAAACACACGTGCACATATCCACACACATGGATGGACGCATGTACGCATAGCA
TTGCATGTCACATACAGGCACTATAGGAGTGTACACAGCTCTCTCCACAAATAATATACACAAT
GTGCACACGTGCACACACACACTTTGAACACACATAGTGCTTTGGGGAAGGGAGAGTCTTCGGT
GTTCTGTTCTACAGGAGCTCATGTCTAGCCTGGAACTTACTATGTAGTTGAGACTGGCCTTGAA
TTGCTGACCTTCAGGTGTGCACCACTATGAATGGCTTCAGTGCCCTGTTTCACCAATGGGGACA
TGGCAGCCTGGGTGGGCTGGGGGTAGGGTAACTGAGTTATGGAGAAATCAATGACCCAGCCGTA
TCTGGGGTCTCCAATGGGTCTCTCAGAATCCAAAGGCCCCCTGTTTAAGAGGCAGTCTCGCTAT
AATTCACAGAGGCTTGGATTAGTCAGTGTTCCTGATTCACAGAGTGGTCCTCCATCTTGGATGG
TCCAGTTTGAGAGGACCAGGATCAAAGGATCTGGTCATTGGCTCCTGTCTGTCAGGCAGTTCTG
CTTTTTATTTTTCCCCTCTTTCTACCTCTGCTCAGTCAGTCCTAGACCCTCCATGAGCATGTCC
CCGTCGTTTTCAGGGTTTCCCTAGTCTGTTGACCACTCCCCTGAAAGGCATCTACATGTTGTGG
GGGAGGAGAAGGACGCTTCTCTTGCTGCACCCTGGGAAGAAACCTGTTTGATCCACAGCCGGGA
AGTGGCTAAAGGAGGAAGTAACAGAGTGAGAGTGAGGGAAATCAGAGGCCCAGGAGACTCAGGA
GTGGAGCATGTAGCCTGCTCTTGCTGGCAGGCTCCCCCAAGGTGATCCGGTGAGAGAAGATGCA
TTTGTCATTGCTGGCTCTCTTTCTCTTCTGGATCTCAGGCTGCTTCACTGCTCAGGATCCAGTC
ACAGGTCCAGAGGAGGTGAGCGGTTACGAGCAGGGCTCCCTGACAGTGTGGTGTCGATATGGCT
CATGGTGGAAGGATTACAGCAAGTACTGGTGCCGAGGACCTAAGAGGAGTTCCTGTGAGATTCG
AGTTGAAACCGATGCATCAGAGCGCTTGGTGAAGGAGAACCATGTGTCCATCAGGGACGACCAG
ACAAACTTCACCTTCACAGTGACCATGGAGGACCTGAGGATGAGCGATGCTGGCATTTACTGGT
GTGGAATTACAAAGGCTGGATATGATCACATGTTTAAAGTTCATGTGAGCATTAACCCAGGTAA
GAGGTATGACAGTGGTGGTGTCGGCGACGGTAATGGGTTTCTGGATCTCAGCGTGCTCCTCCCA
GTCATCTCTGCAGCCCTGTTGCTTCTCTTGCTGGTGGTCTCACTAATTGCTTGGAGGATGGTGA
GGAGACAGAAGAAAGCTGCTGGACCACCCTCAGGGCAGCCTCTGGAGGATGATCTCTGTTATGC
AAACCTGTCACTGCAGCAGCCCAGAACCTCCCCTTTGAAAAAGGGCTCCTCCATGTCCTCCTCT
GGCAAGGACCACCAAGAGGAAGTGGAATACGTCACCATGGCTCCCTTCCCTAGGGAGGAGATTT
CATACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAGGAACCTACTTACAGCAACACTGCCTGCCT
TGTCACCCATGGTCCCAGGACAAACCTTGGAGAGGAGACCACAGAGTACAGCAGCATCAGGAGG
CCCATGCCTTGATCTTGGTCCCTGAAGGTGGCCCGGGAGCATGCGTTTGCACATCGGCCTCTGT
GCCTGCTTCCTTACCAGGCCTGGCGGGCGACTGAAACTCTGAACGTTCATCTCTCATGGTCTTC
AGCTCTACCTTGAGCTTGGAGTTCAGCCTTGGGGGGCTCCAGTGAATTAAGGCTCCTTCCACAT
CTCTCCACATAGAGCCAACGCACCTTGGAAGGTACCAGGCAGGCTGCTTCAGGGATGCTGTGTA
ATTCATAACGGTGGCAATAATAATGGCAACCAACCTTTATTTATTGTTATTCATACGGGTGCCC
CTCCCGGACATTTTCATCCTCATACCCAAAATCTGTGAATTATTCTTACAAAGGAAGACAGATA
TATATGTGTTTAAGTTAGGGATTTTGAGATTTAAGTCTGTTATTATCCAAGTAGGTCCCATATA
AAGCTACAAGGGTCCCTTTAAAGGGGAATAGAGCAAGTCAGAGAAAAAGGGGGAGGGG

hide sequence

RefSeq Acc Id:

XM_017597155 ⟹ XP_017452644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,111 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,376,130 (-)	NCBI
Rnor_6.0	10	103,670,022 - 103,686,735 (-)	NCBI

Sequence:

show sequence

AGGTGGGGGGACGGCCCTGGGATGCTCACTAAATTTCTGGGGAATACAGGTTAACTCCATATCT
ATTACCCAGTAGTTGGGGCAGATCAACAAGAGTGCTCTCAAAGCAGAGCCCTGTGGGTATGTAG
ATCCCTGTTCATACATCCTGAGCCCCTCTCTTTGTAATTTTGTAACGGGTAAAGGTGCTGAGGG
TCAGACACCCTTATGTTAGGCAAGAGCAGAGCAATACTTCCTCCCCTCCTCTTAGCCAGGTATC
ACTATGTAGCCCAGGCTAGTCTGGAACTTACCACGTAGCTCAGCTTCAAGTCAAACTTTGAATC
CCCCTGTTTCTGCCTCTTAAATTCTTGGATTACAGCTGTGCCTGCCACCCATGATAAGGCTGGC
TTTTTTCTTTTCTTTTCTTTTTTTCAGAGCTGAACCCAGGGCCTTGTACTTGCTAGGCAAGCGC
CCTACCAGTGAGCTTAAACCCCCAACCCAAGGCTGGCTTTTGACACCTCCTCAGCGCCCTCAGC
TCTCCCCACTCCAGTCTGTTCTAGAGCCTCTCTTCTTGGCACCCCTCAGCCTAATGAAGTTCTG
GCCTCCATCAACTCTAGCTCTAGCTGAAGCCATCCAGAATTAGCGGACTTGCATGTAAAGGGTA
GGAGGCCCCAGTTCTCTTTCCAGAGAAGTCACTGCAGTGCCGAGGAGGGTGAAGTTTCTCAAAG
GCCTTTTCACAAGTCCGAATTTCTTGCATTACACTTCTCTCACCCTACCTCCTTCCTCTTTTGC
TTTTATTTGCCAGCGGGAAGTGGCTAAAGGAGGAAGTAACAGAGTGAGAGTGAGGGAAATCAGA
GGCCCAGGAGACTCAGGAGTGGAGCATGTAGCCTGCTCTTGCTGGCAGGCTCCCCCAAGGTGAT
CCGGTGAGAGAAGATGCATTTGTCATTGCTGGCTCTCTTTCTCTTCTGGATCTCAGGCTGCTTC
ACTGCTCAGGATCCAGTCACAGGTCCAGAGGAGGTGAGCGGTTACGAGCAGGGCTCCCTGACAG
TGTGGTGTCGATATGGCTCATGGTGGAAGGATTACAGCAAGTACTGGTGCCGAGGACCTAAGAG
GAGTTCCTGTGAGATTCGAGTTGAAACCGATGCATCAGAGCGCTTGGTGAAGGAGAACCATGTG
TCCATCAGGGACGACCAGACAAACTTCACCTTCACAGTGACCATGGAGGACCTGAGGATGAGCG
ATGCTGGCATTTACTGGTGTGGAATTACAAAGGCTGGATATGATCACATGTTTAAAGTTCATGT
GAGCATTAACCCAGCAACCCAGTCACCCACTACAGTGCCAACAACGCCCACCACCACCTCCACC
ACCACCATCTTCACAGTGACAACCACTGTAAAAGAGACCAGCACGCTTTCAACGCAGACCAGCC
ACTACTCTGATAACAGGTATGACAGTGGTGGTGTCGGCGACGGTAATGGGTTTCTGGATCTCAG
CGTGCTCCTCCCAGTCATCTCTGCAGCCCTGTTGCTTCTCTTGCTGGTGGTCTCACTAATTGCT
TGGAGGATGGTGAGGAGACAGAAGAAAGCTGCTGGACCACCCTCAGGGCAGGTAAAAGTGTCCC
AGAGGCCAGACGAAGAGACCAGCAGGCTTCTCTCTCCCTCTTTTCCTTGTTTTTTCACCTCTTT
GGAGCCTCCTCTGGAGGATGATCTCTGTTATGCAAACCTGTCACTGCAGCAGCCCAGAACCTCC
CCTTTGAAAAAGGGCTCCTCCATGTCCTCCTCTGGCAAGGACCACCAAGAGGAAGTGGAATACG
TCACCATGGCTCCCTTCCCTAGGGAGGAGATTTCATACGCTGCTCTGTCTTTGGCGAGCTTGGG
TCAGGAACCTACTTACAGCAACACTGCCTGCCTTGTCACCCATGGTCCCAGGACAAACCTTGGA
GAGGAGACCACAGAGTACAGCAGCATCAGGAGGCCCATGCCTTGATCTTGGTCCCTGAAGGTGG
CCCGGGAGCATGCGTTTGCACATCGGCCTCTGTGCCTGCTTCCTTACCAGGCCTGGCGGGCGAC
TGAAACTCTGAACGTTCATCTCTCATGGTCTTCAGCTCTACCTTGAGCTTGGAGTTCAGCCTTG
GGGGGCTCCAGTGAATTAAGGCTCCTTCCACATCTCTCCACATAGAGCCAACGCACCTTGGAAG
GTACCAGGCAGGCTGCTTCAGGGATGCTGTGTAATTCATAACGGTGGCAATAATAATGGCAACC
AACCTTTATTTATTGTTATTCATACGGGTGCCCCTCCCGGACATTTTCATCCTCATACCCAAAA
TCTGTGAATTATTCTTACAAAGGAAGACAGATATATATGTGTTTAAGTTAGGGATTTTGAGATT
TAAGTCTGTTATTATCCAAGTAGGTCCCATATAAAGCTACAAGGGTCCCTTTAAAGGGGAATAG
AGCAAGTCAGAGAAAAAGGGGGAGGGG

hide sequence

RefSeq Acc Id:

XM_039085667 ⟹ XP_038941595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,865,616 (-)	NCBI
mRatBN7.2	10	100,359,942 - 100,366,646 (-)	NCBI

RefSeq Acc Id:

XM_063268777 ⟹ XP_063124847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,858,924 - 100,875,107 (-)	NCBI

RefSeq Acc Id:

XM_063268778 ⟹ XP_063124848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,860,810 - 100,875,111 (-)	NCBI

RefSeq Acc Id:

XR_005489765

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,860,159 - 100,875,109 (-)	NCBI
mRatBN7.2	10	100,361,172 - 100,376,127 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020282	(Get FASTA)	NCBI Sequence Viewer
	NP_001381144	(Get FASTA)	NCBI Sequence Viewer
	XP_008766559	(Get FASTA)	NCBI Sequence Viewer
	XP_008766560	(Get FASTA)	NCBI Sequence Viewer
	XP_008766561	(Get FASTA)	NCBI Sequence Viewer
	XP_008766562	(Get FASTA)	NCBI Sequence Viewer
	XP_008766564	(Get FASTA)	NCBI Sequence Viewer
	XP_017452644	(Get FASTA)	NCBI Sequence Viewer
	XP_038941595	(Get FASTA)	NCBI Sequence Viewer
	XP_063124847	(Get FASTA)	NCBI Sequence Viewer
	XP_063124848	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH93593	(Get FASTA)	NCBI Sequence Viewer
	ACY00701	(Get FASTA)	NCBI Sequence Viewer
	ACY00707	(Get FASTA)	NCBI Sequence Viewer
	ADV56672	(Get FASTA)	NCBI Sequence Viewer
	EDM06561	(Get FASTA)	NCBI Sequence Viewer
	EDM06562	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033887
	ENSRNOP00000033887.6
GenBank Protein	Q566E6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001020282 ⟸ NM_001025111
- Peptide Label:	isoform 2 precursor
- UniProtKB:	Q566E6 (UniProtKB/Swiss-Prot), D0VBM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYGSWWKDYSKYWCRGPKRSSCE IRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMSDAGIYWCGITKAGYDHMFKVHVSINP VPTTPTTTSTTTIFTVTTTVKETSTLSTQTSHYSDNRYDSGGVGDGNGFLDLSVLLPVISAALL LLLLVVSLIAWRMVRRQKKAAGPPSGQADSVTHILCPPKPHVQPLEDDLCYANLSLQQPRTSPL KKGSSMSSSGKDHQEEVEYVTMAPFPREEISYAALSLASLGQEPTYSNTACLVTHGPRTNLGEE TTEYSSIRRPMP hide sequence

RefSeq Acc Id:	XP_008766559 ⟸ XM_008768337
- Peptide Label:	isoform X2
- UniProtKB:	D0VBM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYGSWWKDYSKYWCRGPKRSSCE IRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMSDAGIYWCGITKAGYDHMFKVHVSINP VPTTPTTTSTTTIFTVTTTVKETSTLSTQTSHYSDNRYDSGGVGDGNGFLDLSVLLPVISAALL LLLLVVSLIAWRMVRRQKKAAGPPSGQVKVSQRPDEETSRLLSPSFPCFFTSLEPPLEDDLCYA NLSLQQPRTSPLKKGSSMSSSGKDHQEEVEYVTMAPFPREEISYAALSLASLGQEPTYSNTACL VTHGPRTNLGEETTEYSSIRRPMP hide sequence

RefSeq Acc Id:	XP_008766560 ⟸ XM_008768338
- Peptide Label:	isoform X3
- UniProtKB:	D0VBM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYGSWWKDYSKYWCRGPKRSSCE IRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMSDAGIYWCGITKAGYDHMFKVHVSINP VTTTVKETSTLSTQTSHYSDNRYDSGGVGDGNGFLDLSVLLPVISAALLLLLLVVSLIAWRMVR RQKKAAGPPSGQVKVSQRPDEETSRLLSPSFPCFFTSLEPPLEDDLCYANLSLQQPRTSPLKKG SSMSSSGKDHQEEVEYVTMAPFPREEISYAALSLASLGQEPTYSNTACLVTHGPRTNLGEETTE YSSIRRPMP hide sequence

RefSeq Acc Id:	XP_008766562 ⟸ XM_008768340
- Peptide Label:	isoform X6
- UniProtKB:	D0VBM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYGSWWKDYSKYWCRGPKRSSCE IRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMSDAGIYWCGITKAGYDHMFKVHVSINP GKRYDSGGVGDGNGFLDLSVLLPVISAALLLLLLVVSLIAWRMVRRQKKAAGPPSGQVKVSQRP DEETSRLLSPSFPCFFTSLEPPLEDDLCYANLSLQQPRTSPLKKGSSMSSSGKDHQEEVEYVTM APFPREEISYAALSLASLGQEPTYSNTACLVTHGPRTNLGEETTEYSSIRRPMP hide sequence

RefSeq Acc Id:	XP_008766561 ⟸ XM_008768339
- Peptide Label:	isoform X4
- UniProtKB:	D0VBM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYGSWWKDYSKYWCRGPKRSSCE IRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMSDAGIYWCGITKAGYDHMFKVHVSINP ATQSPTTVPTTPTTTSTTTIFTVTTTVKETSTLSTQTSHYSDNRYDSGGVGDGNGFLDLSVLLP VISAALLLLLLVVSLIAWRMVRRQKKAAGPPSGQPLEDDLCYANLSLQQPRTSPLKKGSSMSSS GKDHQEEVEYVTMAPFPREEISYAALSLASLGQEPTYSNTACLVTHGPRTNLGEETTEYSSIRR PMP hide sequence

RefSeq Acc Id:	XP_008766564 ⟸ XM_008768342
- Peptide Label:	isoform X7
- UniProtKB:	F1M5J1 (UniProtKB/TrEMBL), D0VBM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYGSWWKDYSKYWCRGPKRSSCE IRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMSDAGIYWCGITKAGYDHMFKVHVSINP GKRYDSGGVGDGNGFLDLSVLLPVISAALLLLLLVVSLIAWRMVRRQKKAAGPPSGQPLEDDLC YANLSLQQPRTSPLKKGSSMSSSGKDHQEEVEYVTMAPFPREEISYAALSLASLGQEPTYSNTA CLVTHGPRTNLGEETTEYSSIRRPMP hide sequence

RefSeq Acc Id:	XP_017452644 ⟸ XM_017597155
- Peptide Label:	isoform X1
- UniProtKB:	D0VBM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYGSWWKDYSKYWCRGPKRSSCE IRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMSDAGIYWCGITKAGYDHMFKVHVSINP ATQSPTTVPTTPTTTSTTTIFTVTTTVKETSTLSTQTSHYSDNRYDSGGVGDGNGFLDLSVLLP VISAALLLLLLVVSLIAWRMVRRQKKAAGPPSGQVKVSQRPDEETSRLLSPSFPCFFTSLEPPL EDDLCYANLSLQQPRTSPLKKGSSMSSSGKDHQEEVEYVTMAPFPREEISYAALSLASLGQEPT YSNTACLVTHGPRTNLGEETTEYSSIRRPMP hide sequence

Ensembl Acc Id:

ENSRNOP00000059445 ⟸ ENSRNOT00000064284

Ensembl Acc Id:

ENSRNOP00000033887 ⟸ ENSRNOT00000039284

RefSeq Acc Id:	XP_038941595 ⟸ XM_039085667
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000078696 ⟸ ENSRNOT00000098715

RefSeq Acc Id:	NP_001381144 ⟸ NM_001394215
- Peptide Label:	isoform 1 precursor
- UniProtKB:	D0V9T5 (UniProtKB/TrEMBL), D0VBM0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124847 ⟸ XM_063268777
- Peptide Label:	isoform X5
- UniProtKB:	D0VBM0 (UniProtKB/TrEMBL), A0A0H2UHU2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124848 ⟸ XM_063268778
- Peptide Label:	isoform X9
- UniProtKB:	E9MW48 (UniProtKB/TrEMBL)

Protein Domains

Ig-like V-type Immunoglobulin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q566E6-F1-model_v2	AlphaFold	Q566E6	1-332	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697891

Promoter ID:

EPDNEW_R8402

Type:

single initiation site

Name:

Cd300lf_1

Description:

Cd300 molecule-like family member F

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	103,685,906 - 103,685,966	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309733	AgrOrtholog
BioCyc Gene	G2FUF-22698	BioCyc
Ensembl Genes	ENSRNOG00000021424	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000039284	ENTREZGENE
	ENSRNOT00000039284.6	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7314621	IMAGE-MGC_LOAD
InterPro	CD300_family_receptors	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
KEGG Report	rno:287818	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105599	IMAGE-MGC_LOAD
NCBI Gene	287818	ENTREZGENE
PANTHER	CMRF35-LIKE MOLECULE 1	UniProtKB/Swiss-Prot
	POLYMERIC-IMMUNOGLOBULIN RECEPTOR	UniProtKB/Swiss-Prot
Pfam	SIT	UniProtKB/Swiss-Prot
	V-set	UniProtKB/Swiss-Prot
PhenoGen	Cd300lf	PhenoGen
RatGTEx	ENSRNOG00000021424	RatGTEx
SMART	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHU2	ENTREZGENE, UniProtKB/TrEMBL
	A6HKK5_RAT	UniProtKB/TrEMBL
	A6HKK6_RAT	UniProtKB/TrEMBL
	CLM1_RAT	UniProtKB/Swiss-Prot
	D0V9T5	ENTREZGENE, UniProtKB/TrEMBL
	D0VBM0	ENTREZGENE, UniProtKB/TrEMBL
	E9MW48	ENTREZGENE, UniProtKB/TrEMBL
	F1M5J1	ENTREZGENE
	Q566E6	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-11-30	Cd300lf	Cd300 molecule-like family member F	Cd300lf	CD300 molecule-like family member f	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-06-27	Cd300lf	CD300 molecule-like family member f	Cd300lf	CD300 antigen like family member F	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Cd300lf	CD300 antigen like family member F	RGD1309733	similar to DC-derived Ig-like receptor 2	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1309733	similar to DC-derived Ig-like receptor 2	RGD1309733_predicted	similar to DC-derived Ig-like receptor 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1309733_predicted	similar to DC-derived Ig-like receptor 2 (predicted)	LOC287818_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC287818_predicted	similar to DC-derived Ig-like receptor 2 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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