Taf1d (TATA-box binding protein associated factor, RNA polymerase I subunit D) - Rat Genome Database

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Gene: Taf1d (TATA-box binding protein associated factor, RNA polymerase I subunit D) Rattus norvegicus
Analyze
Symbol: Taf1d
Name: TATA-box binding protein associated factor, RNA polymerase I subunit D
RGD ID: 1309627
Description: Predicted to enable identical protein binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in cytosol; microtubule cytoskeleton; and nucleolus. Predicted to be part of RNA polymerase transcription factor SL1 complex. Predicted to be active in nucleoplasm. Orthologous to human TAF1D (TATA-box binding protein associated factor, RNA polymerase I subunit D); PARTICIPATES IN RNA polymerase I transcription pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Josd3; Josephin domain containing 3; LOC363017; RGD1309627; similar to RIKEN cDNA 4930553M18; TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D; TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa; TATA box-binding protein-associated factor 1D; TATA box-binding protein-associated factor RNA polymerase I subunit D; TBP-associated factor 1D; transcription initiation factor SL1/TIF-IB subunit D
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,427,894 - 20,438,046 (+)NCBIGRCr8
mRatBN7.2812,146,511 - 12,156,647 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,146,605 - 12,156,618 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx816,128,314 - 16,138,377 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,426,064 - 14,436,127 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,409,533 - 12,419,603 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,861,242 - 13,871,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,861,459 - 13,871,354 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,800,779 - 13,811,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,107,144 - 12,117,177 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1812,108,474 - 12,117,177 (+)NCBI
Celera813,614,324 - 13,624,354 (+)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
cyclosporin A  (ISO)
DDT  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
fluoranthene  (ISO)
FR900359  (ISO)
glafenine  (EXP)
glyphosate  (EXP)
inulin  (ISO)
leflunomide  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methoxyacetic acid  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP,ISO)
methylparaben  (ISO)
Monobutylphthalate  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
sodium fluoride  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. TFIIB-related factors in RNA polymerase I transcription. Knutson BA and Hahn S, Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):265-73. doi: 10.1016/j.bbagrm.2012.08.003. Epub 2012 Aug 30.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Taf1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,427,894 - 20,438,046 (+)NCBIGRCr8
mRatBN7.2812,146,511 - 12,156,647 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,146,605 - 12,156,618 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx816,128,314 - 16,138,377 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,426,064 - 14,436,127 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,409,533 - 12,419,603 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,861,242 - 13,871,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,861,459 - 13,871,354 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,800,779 - 13,811,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,107,144 - 12,117,177 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1812,108,474 - 12,117,177 (+)NCBI
Celera813,614,324 - 13,624,354 (+)NCBICelera
Cytogenetic Map8q12NCBI
TAF1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381193,730,194 - 93,741,495 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1193,729,948 - 93,784,391 (-)EnsemblGRCh38hg38GRCh38
GRCh371193,463,360 - 93,474,661 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,108,743 - 93,114,310 (-)NCBINCBI36Build 36hg18NCBI36
Celera1190,760,547 - 90,766,156 (-)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1189,546,328 - 89,551,937 (-)NCBIHuRef
CHM1_11193,352,108 - 93,357,722 (-)NCBICHM1_1
T2T-CHM13v2.01193,646,573 - 93,657,877 (-)NCBIT2T-CHM13v2.0
Taf1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,217,485 - 15,228,293 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl915,217,510 - 15,228,287 (+)EnsemblGRCm39 Ensembl
GRCm38915,305,953 - 15,316,997 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,306,214 - 15,316,991 (+)EnsemblGRCm38mm10GRCm38
MGSCv37915,110,658 - 15,121,441 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36915,056,653 - 15,067,390 (+)NCBIMGSCv36mm8
Celera912,585,532 - 12,595,986 (+)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.78NCBI
Taf1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414799,138 - 803,005 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955414799,124 - 806,242 (+)NCBIChiLan1.0ChiLan1.0
TAF1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2994,589,953 - 94,601,305 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11195,683,871 - 95,695,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,752,779 - 88,763,136 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,241,125 - 92,250,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,241,126 - 92,250,416 (-)Ensemblpanpan1.1panPan2
TAF1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1217,013,383 - 7,023,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha217,028,356 - 7,038,468 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0217,193,612 - 7,203,729 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1216,979,781 - 6,989,893 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0217,044,183 - 7,054,293 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0217,093,040 - 7,103,156 (+)NCBIUU_Cfam_GSD_1.0
Taf1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494778,837,681 - 78,849,777 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366741,046,610 - 1,050,177 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366741,044,519 - 1,053,744 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,160,795 - 26,167,288 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,154,910 - 26,167,282 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2929,682,286 - 29,689,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1184,982,364 - 84,993,601 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl184,988,280 - 84,994,290 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604340,807,611 - 40,818,849 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,402,356 - 38,405,172 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473538,397,922 - 38,407,255 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Taf1d
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:34
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000014605
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat

Markers in Region
RH130449  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q12UniSTS
RH132383  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2812,156,863 - 12,157,070 (+)MAPPERmRatBN7.2
Rnor_6.0813,871,572 - 13,871,778NCBIRnor6.0
Rnor_5.0813,811,137 - 13,811,343UniSTSRnor5.0
RGSC_v3.4812,117,394 - 12,117,600UniSTSRGSC3.4
Celera813,624,571 - 13,624,777UniSTS
RH 3.4 Map8111.9UniSTS
Cytogenetic Map8q12UniSTS
RH138545  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2812,159,526 - 12,159,676 (+)MAPPERmRatBN7.2
Rnor_6.0813,874,235 - 13,874,384NCBIRnor6.0
Rnor_5.0813,813,806 - 13,813,955UniSTSRnor5.0
RGSC_v3.4812,120,057 - 12,120,206UniSTSRGSC3.4
Celera813,627,234 - 13,627,383UniSTS
RH 3.4 Map8111.1UniSTS
Cytogenetic Map8q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 47 31 19 31 8 8 74 35 41 11 8
Low 6 10 10 10 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001393862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_172024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014605   ⟹   ENSRNOP00000014605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,146,605 - 12,152,372 (+)Ensembl
Rnor_6.0 Ensembl813,862,651 - 13,871,354 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078161   ⟹   ENSRNOP00000068730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,146,605 - 12,152,134 (+)Ensembl
Rnor_6.0 Ensembl813,861,459 - 13,867,749 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096680   ⟹   ENSRNOP00000096126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,146,605 - 12,156,618 (+)Ensembl
RefSeq Acc Id: NM_001393862   ⟹   NP_001380791
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,976 - 20,434,795 (+)NCBI
mRatBN7.2812,146,577 - 12,153,396 (+)NCBI
RefSeq Acc Id: NR_172024
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,976 - 20,438,046 (+)NCBI
mRatBN7.2812,146,577 - 12,156,647 (+)NCBI
RefSeq Acc Id: XM_063265684   ⟹   XP_063121754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,894 - 20,434,193 (+)NCBI
RefSeq Acc Id: XM_063265685   ⟹   XP_063121755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,964 - 20,434,193 (+)NCBI
RefSeq Acc Id: XM_063265686   ⟹   XP_063121756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265687   ⟹   XP_063121757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,428,029 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265688   ⟹   XP_063121758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265689   ⟹   XP_063121759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265690   ⟹   XP_063121760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265691   ⟹   XP_063121761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265692   ⟹   XP_063121762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265693   ⟹   XP_063121763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265694   ⟹   XP_063121764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265695   ⟹   XP_063121765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265696   ⟹   XP_063121766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265697   ⟹   XP_063121767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265698   ⟹   XP_063121768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265699   ⟹   XP_063121769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265700   ⟹   XP_063121770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265701   ⟹   XP_063121771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265702   ⟹   XP_063121772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265704   ⟹   XP_063121774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265705   ⟹   XP_063121775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
RefSeq Acc Id: XM_063265706   ⟹   XP_063121776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,427,896 - 20,438,032 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001380791 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121754 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121755 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121756 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121757 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121758 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121759 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121760 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121761 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121762 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121763 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121764 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121765 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121766 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121767 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121768 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121769 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121770 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121771 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121772 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121774 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121775 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121776 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87647 (Get FASTA)   NCBI Sequence Viewer  
  EDL78438 (Get FASTA)   NCBI Sequence Viewer  
  EDL78439 (Get FASTA)   NCBI Sequence Viewer  
  EDL78440 (Get FASTA)   NCBI Sequence Viewer  
  EDL78441 (Get FASTA)   NCBI Sequence Viewer  
  EDL78442 (Get FASTA)   NCBI Sequence Viewer  
  EDL78443 (Get FASTA)   NCBI Sequence Viewer  
  EDL78444 (Get FASTA)   NCBI Sequence Viewer  
  EDL78445 (Get FASTA)   NCBI Sequence Viewer  
  EDL78446 (Get FASTA)   NCBI Sequence Viewer  
  EDL78447 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014605.5
  ENSRNOP00000068730.2
  ENSRNOP00000096126
  ENSRNOP00000096126.1
GenBank Protein Q5M948 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000014605   ⟸   ENSRNOT00000014605
RefSeq Acc Id: ENSRNOP00000068730   ⟸   ENSRNOT00000078161
RefSeq Acc Id: ENSRNOP00000096126   ⟸   ENSRNOT00000096680
RefSeq Acc Id: NP_001380791   ⟸   NM_001393862
- UniProtKB: Q5M948 (UniProtKB/Swiss-Prot),   A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121754   ⟸   XM_063265684
- Peptide Label: isoform X1
- UniProtKB: A6JNC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121756   ⟸   XM_063265686
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121771   ⟸   XM_063265701
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121765   ⟸   XM_063265695
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121768   ⟸   XM_063265698
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121772   ⟸   XM_063265702
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121767   ⟸   XM_063265697
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121761   ⟸   XM_063265691
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121769   ⟸   XM_063265699
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121774   ⟸   XM_063265704
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121758   ⟸   XM_063265688
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121766   ⟸   XM_063265696
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121775   ⟸   XM_063265705
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121770   ⟸   XM_063265700
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121760   ⟸   XM_063265690
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121762   ⟸   XM_063265692
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121763   ⟸   XM_063265693
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121759   ⟸   XM_063265689
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121776   ⟸   XM_063265706
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121764   ⟸   XM_063265694
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121755   ⟸   XM_063265685
- Peptide Label: isoform X1
- UniProtKB: A6JNC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121757   ⟸   XM_063265687
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANJ9 (UniProtKB/TrEMBL),   A6JNC0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M948-F1-model_v2 AlphaFold Q5M948 1-285 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309627 AgrOrtholog
BioCyc Gene G2FUF-31664 BioCyc
Ensembl Genes ENSRNOG00000010921 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014605.7 UniProtKB/TrEMBL
  ENSRNOT00000078161.2 UniProtKB/TrEMBL
  ENSRNOT00000096680 ENTREZGENE
  ENSRNOT00000096680.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7311303 IMAGE-MGC_LOAD
InterPro TAF1D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:363017 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105574 IMAGE-MGC_LOAD
NCBI Gene 363017 ENTREZGENE
PANTHER PTHR14562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TAF1D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Taf1d PhenoGen
RatGTEx ENSRNOG00000010921 RatGTEx
UniProt A0A0G2JTJ0_RAT UniProtKB/TrEMBL
  A0A8I6ANJ9 ENTREZGENE, UniProtKB/TrEMBL
  A6JNC0 ENTREZGENE, UniProtKB/TrEMBL
  A6JNC6 ENTREZGENE, UniProtKB/TrEMBL
  G3V7G4_RAT UniProtKB/TrEMBL
  Q5M948 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Taf1d  TATA-box binding protein associated factor, RNA polymerase I subunit D  Taf1d  TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-27 Taf1d  TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D  Taf1d  TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-17 Taf1d  TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa  Josd3  Josephin domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Josd3  Josephin domain containing 3  RGD1309627  similar to RIKEN cDNA 4930553M18  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1309627  similar to RIKEN cDNA 4930553M18  RGD1309627_predicted  similar to RIKEN cDNA 4930553M18 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309627_predicted  similar to RIKEN cDNA 4930553M18 (predicted)  LOC363017_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363017_predicted  similar to RIKEN cDNA 4930553M18 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL