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Gene: Lrrc49 (leucine rich repeat containing 49) Rattus norvegicus

Analyze

Symbol:

Lrrc49

Name:

leucine rich repeat containing 49

RGD ID:

1309466

Description:

Predicted to act upstream of or within cilium disassembly and microtubule polymerization. Predicted to be located in centriolar satellite. Orthologous to human LRRC49 (leucine rich repeat containing 49); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leucine-rich repeat-containing protein 49; LOC300763; RGD1309466; similar to hypothetical protein FLJ20156

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LRRC49 (leucine rich repeat containing 49)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Lrrc49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lrrc49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LRRC49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LRRC49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lrrc49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LRRC49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LRRC49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lrrc49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lrrc49 (leucine rich repeat containing 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	THAP10 (THAP domain containing 10)	HGNC	OrthoDB
Homo sapiens (human):	FOLR1 (folate receptor alpha)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Lrrc49 (leucine rich repeat containing 49)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lrrc49 (leucine rich repeat containing 49)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LRRC49 (leucine rich repeat containing 49)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LRRC49 (leucine rich repeat containing 49)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13708	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13708	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lrrc49	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lrrc49	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	69,948,962 - 70,056,579 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	69,948,972 - 70,079,636 (-)	Ensembl				GRCr8
mRatBN7.2	8	61,053,264 - 61,160,695 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	61,053,267 - 61,160,850 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	66,561,249 - 66,668,708 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	64,834,189 - 64,941,267 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	62,703,669 - 62,811,138 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	65,481,584 - 65,587,687 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	65,481,592 - 65,587,658 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	65,233,813 - 65,339,662 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	64,524,550 - 64,631,904 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	60,480,044 - 60,587,218 (-)	NCBI		Celera
RGSC_v3.1	8	64,543,611 - 64,650,971 (-)	NCBI
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldrin (ISO)

amphetamine (EXP)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

chloroethene (ISO)

choline (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

L-methionine (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

potassium chromate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

centriolar satellite (IEA,ISO)

microtubule (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Lrrc49
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	69,948,962 - 70,056,579 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	69,948,972 - 70,079,636 (-)	Ensembl				GRCr8
mRatBN7.2	8	61,053,264 - 61,160,695 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	61,053,267 - 61,160,850 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	66,561,249 - 66,668,708 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	64,834,189 - 64,941,267 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	62,703,669 - 62,811,138 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	65,481,584 - 65,587,687 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	65,481,592 - 65,587,658 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	65,233,813 - 65,339,662 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	64,524,550 - 64,631,904 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	60,480,044 - 60,587,218 (-)	NCBI		Celera
RGSC_v3.1	8	64,543,611 - 64,650,971 (-)	NCBI
Cytogenetic Map	8	q24	NCBI

LRRC49
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	70,853,378 - 71,053,658 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	70,853,239 - 71,053,658 (+)	Ensembl			hg38	GRCh38
GRCh37	15	71,145,717 - 71,345,997 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	68,972,041 - 69,129,490 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	15	48,075,878 - 48,233,321 (+)	NCBI		Celera
Cytogenetic Map	15	q23	NCBI
HuRef	15	48,020,472 - 48,177,963 (+)	NCBI		HuRef
CHM1_1	15	71,303,192 - 71,460,675 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	68,676,342 - 68,876,951 (+)	NCBI		T2T-CHM13v2.0

Lrrc49
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	60,494,507 - 60,595,460 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	60,476,142 - 60,595,441 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	60,587,224 - 60,688,167 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	60,568,859 - 60,688,158 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	60,435,036 - 60,535,941 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	60,385,246 - 60,485,917 (-)	NCBI		MGSCv36	mm8
Celera	9	57,812,803 - 57,913,421 (-)	NCBI		Celera
Cytogenetic Map	9	B	NCBI
cM Map	9	32.75	NCBI

Lrrc49
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	5,903,266 - 6,030,279 (-)	Ensembl
ChiLan1.0	NW_004955450	5,903,345 - 6,030,279 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRRC49
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	60,155,994 - 60,316,144 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	64,319,908 - 64,479,628 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	49,841,934 - 50,023,736 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	68,608,412 - 68,769,334 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	68,589,175 - 68,769,334 (+)	Ensembl			panPan2	panpan1.1

LRRC49
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	34,580,906 - 34,737,181 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	34,581,241 - 34,737,009 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	34,515,159 - 34,673,673 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	34,781,934 - 34,938,531 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	34,782,217 - 34,938,848 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	34,728,801 - 34,893,909 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	34,766,753 - 34,921,966 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	35,018,625 - 35,177,587 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lrrc49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	112,568,323 - 112,729,798 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	30,416,174 - 30,577,874 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	30,416,179 - 30,578,312 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC49
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	168,544,421 - 168,700,891 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	168,553,361 - 168,711,739 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	186,834,369 - 186,981,844 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC49
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	12,405,249 - 12,568,597 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	12,405,721 - 12,567,987 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	128,921,019 - 129,151,558 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc49
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	2,848,502 - 2,990,738 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624781	2,848,567 - 3,007,102 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lrrc49
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	54,881,283 - 54,987,753 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lrrc49
484 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	88
Count of miRNA genes:	68
Interacting mature miRNAs:	80
Transcripts:	ENSRNOT00000016491
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	58991697	91341052	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	63404444	108404444	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	58991697	91341052	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	62848139	107848139	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	62848139	107848139	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	62970527	107970527	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	62848139	107848139	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	62848139	107848139	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	62848139	107848139	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	62848139	107848139	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	58991697	91341052	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	62848139	107848139	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	62963099	107963099	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	62982864	107982864	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat

Markers in Region

D8Rat184

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	70,041,409 - 70,041,571 (+)	Marker Load Pipeline
mRatBN7.2	8	61,145,771 - 61,145,933 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	65,572,904 - 65,573,065	NCBI	Rnor6.0
Rnor_5.0	8	65,325,139 - 65,325,300	UniSTS	Rnor5.0
RGSC_v3.4	8	64,617,023 - 64,617,185	RGD	RGSC3.4
RGSC_v3.4	8	64,617,024 - 64,617,185	UniSTS	RGSC3.4
Celera	8	60,572,500 - 60,572,661	UniSTS
RGSC_v3.1	8	64,636,077 - 64,636,239	RGD
SHRSP x BN Map	8	43.6499	UniSTS
SHRSP x BN Map	8	43.6499	RGD
Cytogenetic Map	8	q24	UniSTS

D8Rat185

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	69,997,375 - 69,997,602 (+)	Marker Load Pipeline
mRatBN7.2	8	61,101,680 - 61,101,909 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	65,528,892 - 65,529,118	NCBI	Rnor6.0
Rnor_5.0	8	65,281,152 - 65,281,378	UniSTS	Rnor5.0
RGSC_v3.4	8	64,572,921 - 64,573,148	RGD	RGSC3.4
RGSC_v3.4	8	64,572,922 - 64,573,148	UniSTS	RGSC3.4
Celera	8	60,528,540 - 60,528,766	UniSTS
RGSC_v3.1	8	64,591,975 - 64,592,202	RGD
SHRSP x BN Map	8	43.6499	UniSTS
SHRSP x BN Map	8	43.6499	RGD
Cytogenetic Map	8	q24	UniSTS

RH133570

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	61,161,189 - 61,161,372 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	65,587,922 - 65,588,104	NCBI	Rnor6.0
Rnor_5.0	8	65,340,157 - 65,340,339	UniSTS	Rnor5.0
RGSC_v3.4	8	64,632,399 - 64,632,581	UniSTS	RGSC3.4
Celera	8	60,587,713 - 60,587,895	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH133846

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	61,053,443 - 61,053,632 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	65,481,764 - 65,481,952	NCBI	Rnor6.0
Rnor_5.0	8	65,233,993 - 65,234,181	UniSTS	Rnor5.0
RGSC_v3.4	8	64,524,730 - 64,524,918	UniSTS	RGSC3.4
Celera	8	60,480,224 - 60,480,412	UniSTS
RH 3.4 Map	8	723.8	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	80	59	6	344	180	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC160848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016491 ⟹ ENSRNOP00000016491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	69,948,972 - 70,056,333 (-)	Ensembl
mRatBN7.2 Ensembl	8	61,053,272 - 61,160,695 (-)	Ensembl
Rnor_6.0 Ensembl	8	65,481,592 - 65,587,427 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091982 ⟹ ENSRNOP00000074741

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	69,948,972 - 70,056,080 (-)	Ensembl
mRatBN7.2 Ensembl	8	61,053,272 - 61,160,243 (-)	Ensembl
Rnor_6.0 Ensembl	8	65,481,613 - 65,587,658 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109644 ⟹ ENSRNOP00000097055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	69,948,972 - 70,056,080 (-)	Ensembl
mRatBN7.2 Ensembl	8	61,053,267 - 61,160,850 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119955 ⟹ ENSRNOP00000077361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	69,948,972 - 70,079,636 (-)	Ensembl
mRatBN7.2 Ensembl	8	61,053,272 - 61,160,695 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132362 ⟹ ENSRNOP00000105989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	69,948,972 - 70,056,333 (-)	Ensembl

RefSeq Acc Id:

NM_001134469 ⟹ NP_001127941

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,964 - 70,056,333 (-)	NCBI
mRatBN7.2	8	61,053,264 - 61,160,695 (-)	NCBI
Rnor_6.0	8	65,481,584 - 65,587,427 (-)	NCBI
Rnor_5.0	8	65,233,813 - 65,339,662 (-)	NCBI
RGSC_v3.4	8	64,524,550 - 64,631,904 (-)	RGD
Celera	8	60,480,044 - 60,587,218 (-)	RGD

Sequence:

show sequence

CCTCGAAGGAGGATCGAACATCCTGGACTGTTTCCTGCCATGATTCCCGGGAAATACCGCTCCG
TTTCTGGCCGGGCTGCAAACAACGTGAACTGTGGACTTCATCTGGTTATTCAAACGTCGTCACT
TTCTGACAAAAACAAAGTTGAATTCAAGCTTAATAGAGAAACACCATCATTTCCTGGTAGACTG
TTACAGCATGACCTGGAGAGAAACTACTCAAGTAGACAAGGTGATCACATTAATCTGGTGAGCT
CATCAATGCCATCATTTCCTATTCTCCAGCGTTCTTCTGAAGAGAAAACTCTTTACTCAGACAG
GCTGACCCTAGAAAGACAAAAGTTGACTGTGTGCCCTATCATCGACGGGGAGGAGCACCTTCGT
TTGTTGAACTTTCAGCACAATTTTATAACTCGGATCCAAAATATTTCTAATCTACAGAGGCTAA
TATTCTTGGACTTATATGATAACCAGATTGAAGAAATTAGTGGGCTTTCCACTCTGAAATCCCT
TCGTGTCCTCCTGTTAGGGAAGAACAGAATCAAGAAAATCTCAAATCTGGAGAATCTAAAAAAT
TTAGATGTCTTGGACCTTCATGGAAATCAGATTACCAAAATTGAAAATGTTAATCATTTGTGTG
ACTTGAGAGTTTTAAACCTTGCCAGGAACCTCTTGAGTCATGTTGACAATCTCAACGGTCTGGA
TTCACTAACAGAACTTAACCTTCGCCACAACCAGATCACCTTCGTGAGAGATGTGGATAATTTG
CCCTGCCTCCAACGCCTCTTCCTCAGCTTCAACAATATAACTAGCTTTGAAAGTGTTTCCTGCC
TTGCTGAGTCAACTTCCCTCTCAGACATCACCTTTGATGGCAATCCAATAGCTCAAGAGTCATG
GTACAAACACACGGTCCTTCAGAATATGATGCAGCTGCGCCAGCTAGACATGAAGAGAATCACG
GAAGAAGAAAGACGCGTGGCATCTGTTGTGGCCAAAAAAGAGGAGGAGAAGAAGAGGGAGAGTC
ACAAGCAGTCCTTGCTGAAGGAGAAGAAAAGGTTAACAATTAACAACGTCGCTCGAAAGTGGGA
CTTGCAGCAACGAGTAGCCAATATCGCCATCATTCAGGACAGAAAGGACTCTGAGTCTCCTCCT
CAGGAATCCTGTCAGATCGATGGAGGCACCATCTCCGCATTTCCCGAGGAAGCAGGGTCTCTAG
ATGCGGGACTCAGCAGTGCGTTACAAGGCTTGTCTGTCACAGAAACACACTTGGTGGAGCTAGA
TGGAGAAACCCTGTCACTGTATGGCTCAGGGGCGCTGGAATGCCTAGATCGTAACTGGAGTGTT
CAAACAGCTGGCATGGTCACCACCGTCTCGTTCACATTCATCGAGTTTGATGAAATTGTCCAAG
TACTTCCCAAACTGAAGATGAAGTTTCCAAATTCTCTGCACCTTAAGTTCAGGGAGACCAACCT
TGTGATGCTGCAGCAGTTCAACGCCCTCGCGCAACTTCGTCGGGTTGACCAGTTGACAATCGAT
CCTCAGGGAAACCCAGTGGTGAACTTCACACTCTGGAAGTACTACGTGCTGTTTAGGCTCAGCC
ACTTCAGCATGCAGAAAATAAATGGAACAGAGGTGACACAAAATGACATGATAATGGCTGAAAG
GCTCTTTGGAATCTTAGCACATGTGGCATCCTCTGAGCTGCCCCAGTACCGCATGATTTCAATT
CTGGGTGATGCCAGGAAAAAGCAGTTCCGGTATCTGCTGGAGAACAAATGTAAAAAGCCTGGCA
TCCTCTGTGAGGAGACGAGTGACAGCAAGAGATTAATGGGGGAAAACACAAACCGAGCTACCCT
GAATTACACCACCCGAGAATTCTACCACGAGAAGCTGGAGGAAATAAAGGACAAGAAGAAGTTC
TGCAGGTTGTATGTAGAAGACCTGGTGAAGGAAGCCACAGCCATCAACATGAAAAATGAGGCTC
TGCAGAAGCTGTGGCCACAGATGTTCATCGAGCTTGTCAGGGATGCCGTCATAGAGATCCGCAG
CAAGGACTCCTACATGAAGCTCTGCCTGCAGCAGATCACTGACCAGAAATAGGGATGGCTCATG
CTTCAGACATGGGCAATTGGAGCTGTTTTAAAGTTGGGCAAGATGCAGGTTAGACATGATGAGA
CATCACCACTTCCGCACATACTAGAAAGAGCGGCATCAAAGCCTCGCCCCCTGCACTGTTGAGG
AGGAGGGAGGCAGGAGAGAGGGGGACTCTTTCCCACGCATGCTGACCACACAACCTTGGGGACC
CGAGCAGCAACTGGAGAAGGCCTGGCTGCTGGGTCAGAAATGCTTCTTCAGCTCCTGCTCTGAC
TGGTGTGCCTGCCCCCGTCCCAGGCACAGTGCGTGCTGATGGGCAAGCATGAGACGCCTCTACC
AACCTCCAGCTGAGACTTTTCTCTTATTTTGCCTTTTTATTTTATGTCATGATTTCAAAGCCAA
GCTTATGTTCTTTTTTATGAGTGAAAAATAAATACATTAGTAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_063265143 ⟹ XP_063121213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,056,382 (-)	NCBI

RefSeq Acc Id:

XM_063265144 ⟹ XP_063121214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,055,927 (-)	NCBI

RefSeq Acc Id:

XM_063265145 ⟹ XP_063121215

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,056,383 (-)	NCBI

RefSeq Acc Id:

XM_063265146 ⟹ XP_063121216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,055,951 (-)	NCBI

RefSeq Acc Id:

XM_063265147 ⟹ XP_063121217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,056,383 (-)	NCBI

RefSeq Acc Id:

XM_063265148 ⟹ XP_063121218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,055,915 (-)	NCBI

RefSeq Acc Id:

XM_063265149 ⟹ XP_063121219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,056,579 (-)	NCBI

RefSeq Acc Id:

XM_063265150 ⟹ XP_063121220

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,055,633 (-)	NCBI

RefSeq Acc Id:

XM_063265151 ⟹ XP_063121221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,962 - 70,053,474 (-)	NCBI

RefSeq Acc Id:

XM_063265152 ⟹ XP_063121222

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	69,948,963 - 70,037,424 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001127941	(Get FASTA)	NCBI Sequence Viewer
	NP_001423387	(Get FASTA)	NCBI Sequence Viewer
	NP_001423388	(Get FASTA)	NCBI Sequence Viewer
	NP_001423389	(Get FASTA)	NCBI Sequence Viewer
	XP_063121213	(Get FASTA)	NCBI Sequence Viewer
	XP_063121214	(Get FASTA)	NCBI Sequence Viewer
	XP_063121215	(Get FASTA)	NCBI Sequence Viewer
	XP_063121216	(Get FASTA)	NCBI Sequence Viewer
	XP_063121217	(Get FASTA)	NCBI Sequence Viewer
	XP_063121218	(Get FASTA)	NCBI Sequence Viewer
	XP_063121219	(Get FASTA)	NCBI Sequence Viewer
	XP_063121220	(Get FASTA)	NCBI Sequence Viewer
	XP_063121221	(Get FASTA)	NCBI Sequence Viewer
	XP_063121222	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI60848	(Get FASTA)	NCBI Sequence Viewer
	EDL95721	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016491
	ENSRNOP00000016491.4
	ENSRNOP00000074741
	ENSRNOP00000074741.2
	ENSRNOP00000077361
	ENSRNOP00000077361.2
	ENSRNOP00000097055
	ENSRNOP00000097055.2
	ENSRNOP00000105989
	ENSRNOP00000105989.1

RefSeq Acc Id:

NP_001127941 ⟸ NM_001134469

- UniProtKB:

B1H239 (UniProtKB/TrEMBL), A0A8I5ZJG3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIPGKYRSVSGRAANNVNCGLHLVIQTSSLSDKNKVEFKLNRETPSFPGRLLQHDLERNYSSRQ
GDHINLVSSSMPSFPILQRSSEEKTLYSDRLTLERQKLTVCPIIDGEEHLRLLNFQHNFITRIQ
NISNLQRLIFLDLYDNQIEEISGLSTLKSLRVLLLGKNRIKKISNLENLKNLDVLDLHGNQITK
IENVNHLCDLRVLNLARNLLSHVDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQRLFLSFNNI
TSFESVSCLAESTSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRVASVVAKK
EEEKKRESHKQSLLKEKKRLTINNVARKWDLQQRVANIAIIQDRKDSESPPQESCQIDGGTISA
FPEEAGSLDAGLSSALQGLSVTETHLVELDGETLSLYGSGALECLDRNWSVQTAGMVTTVSFTF
IEFDEIVQVLPKLKMKFPNSLHLKFRETNLVMLQQFNALAQLRRVDQLTIDPQGNPVVNFTLWK
YYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISILGDARKKQFRYLL
ENKCKKPGILCEETSDSKRLMGENTNRATLNYTTREFYHEKLEEIKDKKKFCRLYVEDLVKEAT
AINMKNEALQKLWPQMFIELVRDAVIEIRSKDSYMKLCLQQITDQK

hide sequence

Ensembl Acc Id:

ENSRNOP00000016491 ⟸ ENSRNOT00000016491

Ensembl Acc Id:

ENSRNOP00000074741 ⟸ ENSRNOT00000091982

Ensembl Acc Id:

ENSRNOP00000097055 ⟸ ENSRNOT00000109644

Ensembl Acc Id:

ENSRNOP00000077361 ⟸ ENSRNOT00000119955

RefSeq Acc Id:	XP_063121219 ⟸ XM_063265149
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZJG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121217 ⟸ XM_063265147
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063121215 ⟸ XM_063265145
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZJG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121213 ⟸ XM_063265143
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121216 ⟸ XM_063265146
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063121214 ⟸ XM_063265144
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K8U5 (UniProtKB/TrEMBL), A0A8I5ZJG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121218 ⟸ XM_063265148
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZJG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121220 ⟸ XM_063265150
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063121221 ⟸ XM_063265151
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6AQS1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121222 ⟸ XM_063265152
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6AQS1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105989 ⟸ ENSRNOT00000132362

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K8U5-F1-model_v2	AlphaFold	A0A0G2K8U5	1-752	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696050

Promoter ID:

EPDNEW_R6569

Type:

multiple initiation site

Name:

Lrrc49_1

Description:

leucine rich repeat containing 49

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	65,587,575 - 65,587,635	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309466	AgrOrtholog
BioCyc Gene	G2FUF-30214	BioCyc
Ensembl Genes	ENSRNOG00000012015	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016491	ENTREZGENE
	ENSRNOT00000016491.6	UniProtKB/TrEMBL
	ENSRNOT00000091982	ENTREZGENE
	ENSRNOT00000091982.3	UniProtKB/TrEMBL
	ENSRNOT00000109644	ENTREZGENE
	ENSRNOT00000109644.2	UniProtKB/TrEMBL
	ENSRNOT00000119955	ENTREZGENE
	ENSRNOT00000119955.2	UniProtKB/TrEMBL
	ENSRNOT00000132362	ENTREZGENE
	ENSRNOT00000132362.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8363379	IMAGE-MGC_LOAD
InterPro	Cilia_flagella_integrity	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_4	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
KEGG Report	rno:300763	UniProtKB/TrEMBL
MGC_CLONE	MGC:187588	IMAGE-MGC_LOAD
NCBI Gene	300763	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 49	UniProtKB/TrEMBL
	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	UniProtKB/TrEMBL
Pfam	LRR_4	UniProtKB/TrEMBL
	LRR_9	UniProtKB/TrEMBL
PhenoGen	Lrrc49	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012015	RatGTEx
SMART	LRR_SD22	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	Outer arm dynein light chain 1	UniProtKB/TrEMBL
UniProt	A0A0G2K8U5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZJG3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQS1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LQB1_RAT	UniProtKB/TrEMBL
	B1H239	ENTREZGENE, UniProtKB/TrEMBL
	F7FG58	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Lrrc49	leucine rich repeat containing 49	Lrrc49_predicted	leucine rich repeat containing 49 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Lrrc49_predicted	leucine rich repeat containing 49 (predicted)	RGD1309466_predicted	similar to hypothetical protein FLJ20156 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1309466_predicted	similar to hypothetical protein FLJ20156 (predicted)	LOC300763_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC300763_predicted	similar to hypothetical protein FLJ20156 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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