Advanced Search (OLGA)

Gene: Fars2 (phenylalanyl-tRNA synthetase 2, mitochondrial) Rattus norvegicus

Analyze

Symbol:

Fars2

Name:

phenylalanyl-tRNA synthetase 2, mitochondrial

RGD ID:

1309416

Description:

Predicted to enable phenylalanine-tRNA ligase activity and tRNA binding activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and tRNA processing. Located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 14 and hereditary spastic paraplegia 77. Orthologous to human FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial); PARTICIPATES IN aminoacyl-tRNA biosynthetic pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fars1; LOC306879; phenylalanine--tRNA ligase; phenylalanine--tRNA ligase, mitochondrial; phenylalanine-tRNA synthetase 1 (mitochondrial); phenylalanine-tRNA synthetase 2 (mitochondrial); phenylalanyl-tRNA synthetase, mitochondrial; pheRS

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Fars2 (phenylalanine-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fars2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fars2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fars2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fars2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FANCL (FA complementation group L)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fars2 (phenylalanine-tRNA synthetase 2, mitochondrial)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fars2 (phenylalanyl-tRNA synthetase 2, mitochondrial)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MSF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MSF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	PheRS-m	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fars-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fars2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	28,524,737 - 28,951,818 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	28,524,738 - 28,951,591 (-)	Ensembl				GRCr8
mRatBN7.2	17	28,319,215 - 28,746,217 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	28,319,280 - 28,746,337 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	28,172,413 - 28,606,316 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	29,775,948 - 30,209,861 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	28,156,059 - 28,582,258 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	29,006,981 - 29,438,906 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	29,006,988 - 29,438,668 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	30,910,287 - 31,335,424 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	34,595,255 - 35,048,596 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	27,926,270 - 28,350,728 (-)	NCBI		Celera
RGSC_v3.1	17	34,598,096 - 35,051,437 (-)	NCBI
Cytogenetic Map	17	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

combined oxidative phosphorylation deficiency 14 (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 77 (ISO)

intellectual disability (ISO)

Leigh disease (ISO)

mitochondrial encephalomyopathy (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrotoluene (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3-chloropropane-1,2-diol (EXP)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

inulin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

N-Nitrosopyrrolidine (ISO)

nickel sulfate (ISO)

O-methyleugenol (ISO)

ouabain (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

streptozocin (ISO)

tamoxifen (ISO)

teriflunomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phenylalanyl-tRNA aminoacylation (IBA,IEA,ISO,ISS)

translation (IEA)

tRNA aminoacylation (IEA)

tRNA processing (IEA,ISO,ISS)

Cellular Component

cytoplasm (IBA,IEA)

mitochondrial matrix (IEA)

mitochondrion (IBA,IDA,IEA)

Molecular Function

aminoacyl-tRNA ligase activity (IEA)

ATP binding (IEA)

ligase activity (IEA)

nucleotide binding (IEA)

phenylalanine-tRNA ligase activity (IBA,IEA,ISO,ISS)

protein binding (ISO)

tRNA binding (IEA,ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

aminoacyl-tRNA biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8.	A Newly Identified Missense Mutation in FARS2 Causes Autosomal-Recessive Spastic Paraplegia.	Yang Y, etal., Hum Mutat. 2016 Feb;37(2):165-9. doi: 10.1002/humu.22930. Epub 2015 Dec 10.

Additional References at PubMed

PMID:10329163	PMID:15489334	PMID:18614015	PMID:38362779

Genomics

Comparative Map Data

Fars2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	28,524,737 - 28,951,818 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	28,524,738 - 28,951,591 (-)	Ensembl				GRCr8
mRatBN7.2	17	28,319,215 - 28,746,217 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	28,319,280 - 28,746,337 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	28,172,413 - 28,606,316 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	29,775,948 - 30,209,861 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	28,156,059 - 28,582,258 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	29,006,981 - 29,438,906 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	29,006,988 - 29,438,668 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	30,910,287 - 31,335,424 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	34,595,255 - 35,048,596 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	27,926,270 - 28,350,728 (-)	NCBI		Celera
RGSC_v3.1	17	34,598,096 - 35,051,437 (-)	NCBI
Cytogenetic Map	17	p12	NCBI

FARS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	5,249,934 - 5,771,583 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	5,261,044 - 5,829,192 (+)	Ensembl			hg38	GRCh38
GRCh37	6	5,261,240 - 5,771,816 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	5,206,583 - 5,716,815 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	5,206,725 - 5,716,815	NCBI
Celera	6	6,488,372 - 6,998,947 (+)	NCBI		Celera
Cytogenetic Map	6	p25.1	NCBI
HuRef	6	5,135,999 - 5,646,422 (+)	NCBI		HuRef
CHM1_1	6	5,264,226 - 5,774,754 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	5,119,147 - 5,640,982 (+)	NCBI		T2T-CHM13v2.0

Fars2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	36,301,373 - 36,721,569 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	36,301,395 - 36,910,254 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	36,117,428 - 36,537,595 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	36,117,412 - 36,726,280 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	36,209,280 - 36,629,462 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	36,124,876 - 36,545,059 (+)	NCBI		MGSCv36	mm8
Celera	13	37,233,059 - 37,656,949 (+)	NCBI		Celera
Cytogenetic Map	13	A3.3	NCBI
cM Map	13	14.44	NCBI

Fars2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	7,877,824 - 8,241,742 (-)	Ensembl
ChiLan1.0	NW_004955465	7,878,115 - 8,345,749 (-)	NCBI	ChiLan1.0	ChiLan1.0

FARS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	19,889,702 - 20,402,181 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	15,894,194 - 16,406,206 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	5,096,453 - 5,608,362 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	5,279,111 - 5,790,110 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	5,387,291 - 5,792,749 (+)	Ensembl			panPan2	panpan1.1

FARS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	5,389,694 - 5,887,911 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	5,460,664 - 5,948,574 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	5,394,516 - 5,893,227 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	5,458,863 - 5,962,520 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	5,458,887 - 6,023,559 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	5,324,623 - 5,823,834 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	5,350,375 - 5,849,465 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	6,683,189 - 7,182,810 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fars2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	18,434,776 - 18,936,050 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936534	6,703,749 - 7,087,658 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936534	6,703,760 - 7,205,204 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FARS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	3,262,396 - 3,557,407 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	3,193,433 - 3,557,413 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FARS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	66,356,479 - 66,921,276 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	66,543,452 - 66,898,446 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	5,208,363 - 5,718,281 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fars2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	19,550,103 - 19,928,538 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624756	19,550,198 - 20,016,561 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fars2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	55,222,038 - 55,594,407 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fars2
2964 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	124
Count of miRNA genes:	97
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000021660
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9266755	40968173	Rat
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22660799	55604694	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21498994	50592236	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23286322	64246472	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
1331720	Rf43	Renal function QTL 43	2.881		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	17	15537025	28637951	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	10604694	55604694	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	8574342	32199534	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27233445	65155015	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat

Markers in Region

D17Got38

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	28,634,837 - 28,634,931 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	29,327,419 - 29,327,512	NCBI	Rnor6.0
Rnor_5.0	17	31,224,244 - 31,224,337	UniSTS	Rnor5.0
RGSC_v3.4	17	34,936,490 - 34,936,584	RGD	RGSC3.4
RGSC_v3.4	17	34,936,491 - 34,936,584	UniSTS	RGSC3.4
Celera	17	28,239,714 - 28,239,807	UniSTS
RGSC_v3.1	17	34,939,332 - 34,939,425	RGD
RH 3.4 Map	17	327.6	RGD
RH 3.4 Map	17	327.6	UniSTS
RH 2.0 Map	17	253.3	RGD
Cytogenetic Map	17	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC078956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021660 ⟹ ENSRNOP00000021660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	28,524,738 - 28,951,551 (-)	Ensembl
mRatBN7.2 Ensembl	17	28,319,281 - 28,746,096 (-)	Ensembl
Rnor_6.0 Ensembl	17	29,006,988 - 29,438,668 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080031 ⟹ ENSRNOP00000069318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	28,524,738 - 28,951,591 (-)	Ensembl
mRatBN7.2 Ensembl	17	28,319,280 - 28,746,160 (-)	Ensembl
Rnor_6.0 Ensembl	17	29,025,996 - 29,360,822 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096528 ⟹ ENSRNOP00000095619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	28,524,738 - 28,800,752 (-)	Ensembl
mRatBN7.2 Ensembl	17	28,319,280 - 28,595,119 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108459 ⟹ ENSRNOP00000092101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	28,319,289 - 28,746,337 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113971 ⟹ ENSRNOP00000079964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	28,543,594 - 28,951,591 (-)	Ensembl
mRatBN7.2 Ensembl	17	28,329,644 - 28,746,160 (-)	Ensembl

RefSeq Acc Id:

NM_001013139 ⟹ NP_001013157

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,551 (-)	NCBI
mRatBN7.2	17	28,319,280 - 28,746,096 (-)	NCBI
Rnor_6.0	17	29,006,983 - 29,438,668 (-)	NCBI
Rnor_5.0	17	30,910,287 - 31,335,424 (-)	NCBI
RGSC_v3.4	17	34,595,255 - 35,048,596 (-)	RGD
Celera	17	27,926,270 - 28,350,728 (-)	RGD

Sequence:

show sequence

GTTAAGCTCAGCGACTACCGATTGAACGTGTGGCCGCGTTGCGGACTTCGAAACACCCGCGTTT
GTGTTTCCCCGGCGTAGGCTGGGGTACTGTTTCCTGTGAAGGCCGCCTGACTCTGCATTCTCAC
AAGCAAGTGCACAGGCTTCCAGGCCCCACCTCGGAGAGTTTGTGAGAAGCTTCTATAATGGTCT
GTTTGGCCTTCATCAGAGCTGCCCATGAGCACCTCTACCTGGTGAGGAAAGTCAGTCATGTCTG
CAGATGTCATCAACATCGGGCTTGGGGCTCAAGGCCAGCTGCATCGCAGTTTGCTGTCCAAGGT
GCTCCAGGCCGTGTGCTGGAGCTGCTTGGTAAATCCTACCCTCAAGATGACCACACTAACCTCA
CCCAGAAAGTCCTTTCCAAGGTGGGCAGGAACCTGCACAACCAGAAGTTCCACCCTCTGTGGCT
GATTAAGGAGCGGGTGAAGGAGCACTTCTACCAGCAGTACATGGGGCGATCCAGGACACCTCTG
TTCTCCGTCTATGACCAGCTTTCCCCAGTGGTCACCACCTGGCAGAACTTCGATAGCCTGCTAA
TCCCAGCTGACCACCCCAGCAGGAAGAAGGGGGACAACTATTACTTGAATCGGGGACACATGCT
GAGAGCACACACATCAGCACATCAGTGGGACTTGCTGCATGCGGGGCTCAATGCCTTCCTCGTG
GTAGGTGATGTGTATCGGCGTGACCAGATTGATTCCCAGCACTACCCAGTTTTCCACCAGCTGG
AGGGCGTCCGACTCTTCTCCAAGCATGAGTTATTTGCTGGTGTAAAGGATGGAGAAAGCTTGCA
GCTCTTTGAAGAAAGTTCTCGTTCTGCTCATAAGCAAGAGACACACACCATGGAGGCTGTGAAG
CTTGTGGAATTTGACCTTAAACAAGTACTCACTAGGCTTGTGACACATCTTTTTGGAGATGGGC
TGGAGGTCCGGTGGGTGGACTGCTACTTTCCCTTTACCCACCCTTCCTTCGAGATGGAGATCAA
CTTCCGTGGAGAATGGCTTGAAGTCCTCGGCTGCGGGGTGATGGAACAACAGCTTGTCAATTCA
GCTGGTGCTCAGGATCGGATCGGCTGGGCTTTTGGCCTGGGATTAGAGAGACTGGCTATGGTCC
TCTACGACATCCCGGACATCCGCCTTTTCTGGAGTGAGGATGAGCGCTTCCTGAAGCAGTTCCG
CCTATCAGACATCAATCAAAGCGTCAAGTTTCAGAGATGGTTCTTCCAAGAAGAAAGGGCCACA
GGAATACAAAGGAAGATGGGAAGACAGCTCTGTCCTTTTAGCAAGTACCCCGCTGTGTTCAATG
ACATTTCATTCTGGCTGCCCTCCGAGAACTACACGGAGAATGATTTCTATGACATTGTCCGAAC
AGTCGGAGGAGACCTGGTGGAAAAGGTTGATCTTATAGACAAGTTTGAACATCCAAAGACACAC
AGAACCAGCCATTGCTACCGCATTACCTACCGGCACATGGAACGGACACTGTCCCAGAGAGAAG
TCAGCAGTGTCCACCAGGCTGTGCAGGAGGCCGCTGTGCAGCTACTGGGTGTGGAAGGCCGTTT
TTGATATCATGCATTACATAGGCTGCAGCCCTCACGGAGCTCCAGGACTCGCCAGAAAGGGGAA
ACACATTGTTTGTGAACTGGAGTGTCTGTCCTCGTTTGATAAATGGGTCTGCTTTAGGACTTTC
AGGAAATAAAGGATCACTTTTTAGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253823 ⟹ XP_006253885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,818 (-)	NCBI
mRatBN7.2	17	28,319,435 - 28,746,217 (-)	NCBI
Rnor_6.0	17	29,007,192 - 29,438,789 (-)	NCBI
Rnor_5.0	17	30,910,287 - 31,335,424 (-)	NCBI

Sequence:

show sequence

AGTTATTGACTTCCTGGAGCACCGGCTTTTCTCTGGGCGAGCGGCACAAGGGACCTCGGGCCCG
GGCCTCTTTCCGTCAAGATGGCGGCGCCCAGCGCGCACAGTGTCTGGGTAGCTTGAGGTTAAGC
TCAGCGACTACCGATTGAACGTGTGGCCGCGTTGCGGACTTCGAAACACCCGCGTTTGTGTTTC
CCCGGCGTAGGCTGGGGTACTGTTTCCTGTGAAGGCCGCCTGACTCTGCATTCTCACAAGCAAG
TGCACAGGCTTCCAGGCCCCACCTCGGAGAGTTTGTGAGAAGCTTCTATAATGGTCTGTTTGGC
CTTCATCAGAGCTGCCCATGAGCACCTCTACCTGGTGAGGAAAGTCAGTCATGTCTGCAGATGT
CATCAACATCGGGCTTGGGGCTCAAGGCCAGCTGCATCGCAGTTTGCTGTCCAAGGTGCTCCAG
GCCGTGTGCTGGAGCTGCTTGGTAAATCCTACCCTCAAGATGACCACACTAACCTCACCCAGAA
AGTCCTTTCCAAGGTGGGCAGGAACCTGCACAACCAGAAGTTCCACCCTCTGTGGCTGATTAAG
GAGCGGGTGAAGGAGCACTTCTACCAGCAGTACATGGGGCGATCCAGGACACCTCTGTTCTCCG
TCTATGACCAGCTTTCCCCAGTGGTCACCACCTGGCAGAACTTCGATAGCCTGCTAATCCCAGC
TGACCACCCCAGCAGGAAGAAGGGGGACAACTATTACTTGAATCGGGGACACATGCTGAGAGCA
CACACATCAGCACATCAGTGGGACTTGCTGCATGCGGGGCTCAATGCCTTCCTCGTGGTAGGTG
ATGTGTATCGGCGTGACCAGATTGATTCCCAGCACTACCCAGTTTTCCACCAGCTGGAGGGCGT
CCGACTCTTCTCCAAGCATGAGTTATTTGCTGGTGTAAAGGATGGAGAAAGCTTGCAGCTCTTT
GAAGAAAGTTCTCGTTCTGCTCATAAGCAAGAGACACACACCATGGAGGCTGTGAAGCTTGTGG
AATTTGACCTTAAACAAGTACTCACTAGGCTTGTGACACATCTTTTTGGAGATGGGCTGGAGGT
CCGGTGGGTGGACTGCTACTTTCCCTTTACCCACCCTTCCTTCGAGATGGAGATCAACTTCCGT
GGAGAATGGCTTGAAGTCCTCGGCTGCGGGGTGATGGAACAACAGCTTGTCAATTCAGCTGGTG
CTCAGGATCGGATCGGCTGGGCTTTTGGCCTGGGATTAGAGAGACTGGCTATGGTCCTCTACGA
CATCCCGGACATCCGCCTTTTCTGGAGTGAGGATGAGCGCTTCCTGAAGCAGTTCCGCCTATCA
GACATCAATCAAAGCGTCAAGTTTCAGAGATGGTTCTTCCAAGAAGAAAGGGCCACAGGAATAC
AAAGGAAGATGGGAAGACAGCTCTGTCCTTTTAGCAAGTACCCCGCTGTGTTCAATGACATTTC
ATTCTGGCTGCCCTCCGAGAACTACACGGAGAATGATTTCTATGACATTGTCCGAACAGTCGGA
GGAGACCTGGTGGAAAAGGTTGATCTTATAGACAAGTTTGAACATCCAAAGATTATGGTGTATG
AGGCAGTGATCACAGTGAAGAGACACGTTTTCATGAAGCTTCAGTGTGGAAGAGGCAAATGCCA
AAGATGTAACGGAGTGTTGAAGCCCAGTGGAGAGCAGGCTGCTTTGAGACAGATTCAACTTCAG
CTATGAAAACACCATTGAGAGAAGAGGAAAGGTCCCAGGAGTGATGAGGACACACAGAACCAGC
CATTGCTACCGCATTACCTACCGGCACATGGAACGGACACTGTCCCAGAGAGAAGTCAGCAGTG
TCC

hide sequence

RefSeq Acc Id:

XM_006253825 ⟹ XP_006253887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,688 (-)	NCBI
mRatBN7.2	17	28,319,280 - 28,746,211 (-)	NCBI
Rnor_6.0	17	29,006,981 - 29,438,789 (-)	NCBI
Rnor_5.0	17	30,910,287 - 31,335,424 (-)	NCBI

Sequence:

show sequence

AGTTATTGACTTCCTGGAGCACCGGCTTTTCTCTGGGCGAGCGGCACAAGGGACCTCGGGCCCG
GGCCTCTTTCCGTCAAGATGGCGGCGCCCAGCGCGCACAGTGTCTGGGTAGCTTGAGGTTAAGC
TCAGCGACTACCGATTGAACGTGTGGCCGCGTTGCGGACTTCGAAACACCCGCGTTTGTGTTTC
CCCGGCGTAGGCTGGGGTACTGTTTCCTGTGAAGGCCGCCTGACTCTGCATTCTCACAAGCAAG
TGCACAGGCTTCCAGGCCCCACCTCGGAGAGTTTGTGAGAAGCTTCTATAATGGTCTGTTTGGC
CTTCATCAGAGCTGCCCATGAGCACCTCTACCTGGTGAGGAAAGTCAGTCATGTCTGCAGATGT
CATCAACATCGGGCTTGGGGCTCAAGGCCAGCTGCATCGCAGTTTGCTGTCCAAGGTGCTCCAG
GCCGTGTGCTGGAGCTGCTTGGTAAATCCTACCCTCAAGATGACCACACTAACCTCACCCAGAA
AGTCCTTTCCAAGGTGGGCAGGAACCTGCACAACCAGAAGTTCCACCCTCTGTGGCTGATTAAG
GAGCGGGTGAAGGAGCACTTCTACCAGCAGTACATGGGGCGATCCAGGACACCTCTGTTCTCCG
TCTATGACCAGCTTTCCCCAGTGGTCACCACCTGGCAGAACTTCGATAGCCTGCTAATCCCAGC
TGACCACCCCAGCAGGAAGAAGGGGGACAACTATTACTTGAATCGGGGACACATGCTGAGAGCA
CACACATCAGCACATCAGTGGGACTTGCTGCATGCGGGGCTCAATGCCTTCCTCGTGGTAGGTG
ATGTGTATCGGCGTGACCAGATTGATTCCCAGCACTACCCAGTTTTCCACCAGCTGGAGGGCGT
CCGACTCTTCTCCAAGCATGAGTTATTTGCTGGTGTAAAGGATGGAGAAAGCTTGCAGCTCTTT
GAAGAAAGTTCTCGTTCTGCTCATAAGCAAGAGACACACACCATGGAGGCTGTGAAGCTTGTGG
AATTTGACCTTAAACAAGTACTCACTAGGCTTGTGACACATCTTTTTGGAGATGGGCTGGAGGT
CCGGTGGGTGGACTGCTACTTTCCCTTTACCCACCCTTCCTTCGAGATGGAGATCAACTTCCGT
GGAGAATGGCTTGAAGTCCTCGGCTGCGGGGTGATGGAACAACAGCTTGTCAATTCAGCTGGTG
CTCAGGATCGGATCGGCTGGGCTTTTGGCCTGGGATTAGAGAGACTGGCTATGGTCCTCTACGA
CATCCCGGACATCCGCCTTTTCTGGAGTGAGGATGAGCGCTTCCTGAAGCAGTTCCGCCTATCA
GACATCAATCAAAGCGTCAAGTTTCAGCCTTTTAGCAAGTACCCCGCTGTGTTCAATGACATTT
CATTCTGGCTGCCCTCCGAGAACTACACGGAGAATGATTTCTATGACATTGTCCGAACAGTCGG
AGGAGACCTGGTGGAAAAGGTTGATCTTATAGACAAGTTTGAACATCCAAAGACACACAGAACC
AGCCATTGCTACCGCATTACCTACCGGCACATGGAACGGACACTGTCCCAGAGAGAAGTCAGCA
GTGTCCACCAGGCTGTGCAGGAGGCCGCTGTGCAGCTACTGGGTGTGGAAGGCCGTTTTTGATA
TCATGCATTACACAGGCTGCAGCCCTCACGGAGCTCCAGGACTCGCCAGAAAGGGGAAACACAT
TGTTTGTGAACTGGAGTGTCTGTCCTCGTTTGATAAATGGGTCTGCTTTAGGACTTTCAGGAAA
TAAAGGATCACTTTTTAGAAGCATT

hide sequence

RefSeq Acc Id:

XM_006253826 ⟹ XP_006253888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,659,202 - 28,951,818 (-)	NCBI
mRatBN7.2	17	28,471,430 - 28,746,216 (-)	NCBI
Rnor_6.0	17	29,159,736 - 29,438,789 (-)	NCBI
Rnor_5.0	17	30,910,287 - 31,335,424 (-)	NCBI

Sequence:

show sequence

AGTTATTGACTTCCTGGAGCACCGGCTTTTCTCTGGGCGAGCGGCACAAGGGACCTCGGGCCCG
GGCCTCTTTCCGTCAAGATGGCGGCGCCCAGCGCGCACAGTGTCTGGGTAGCTTGAGGTTAAGC
TCAGCGACTACCGATTGAACGTGTGGCCGCGTTGCGGACTTCGAAACACCCGCGTTTGTGTTTC
CCCGGCGTAGGCTGGGGTACTGTTTCCTGTGAAGGCCGCCTGACTCTGCATTCTCACAAGCAAG
TGCACAGGCTTCCAGGCCCCACCTCGGAGAGTTTGTGAGAAGCTTCTATAATGGTCTGTTTGGC
CTTCATCAGAGCTGCCCATGAGCACCTCTACCTGGTGAGGAAAGTCAGTCATGTCTGCAGATGT
CATCAACATCGGGCTTGGGGCTCAAGGCCAGCTGCATCGCAGTTTGCTGTCCAAGGTGCTCCAG
GCCGTGTGCTGGAGCTGCTTGGTAAATCCTACCCTCAAGATGACCACACTAACCTCACCCAGAA
AGTCCTTTCCAAGGTGGGCAGGAACCTGCACAACCAGAAGTTCCACCCTCTGTGGCTGATTAAG
GAGCGGGTGAAGGAGCACTTCTACCAGCAGTACATGGGGCGATCCAGGACACCTCTGTTCTCCG
TCTATGACCAGCTTTCCCCAGTGGTCACCACCTGGCAGAACTTCGATAGCCTGCTAATCCCAGC
TGACCACCCCAGCAGGAAGAAGGGGGACAACTATTACTTGAATCGGGGACACATGCTGAGAGCA
CACACATCAGCACATCAGTGGGACTTGCTGCATGCGGGGCTCAATGCCTTCCTCGTGGTAGGTG
ATGTGTATCGGCGTGACCAGATTGATTCCCAGCACTACCCAGTTTTCCACCAGCTGGAGGGCGT
CCGACTCTTCTCCAAGCATGAGTTATTTGCTGGTGTAAAGGATGGAGAAAGCTTGCAGCTCTTT
GAAGAAAGTTCTCGTTCTGCTCATAAGCAAGAGACACACACCATGGAGGCTGTGAAGCTTGTGG
AATTTGACCTTAAACAAGTACTCACTAGGCTTGTGACACATCTTTTTGGAGATGGGCTGGAGGT
CCGGTGGGTGGACTGCTACTTTCCCTTTACCCACCCTTCCTTCGAGATGGAGATCAACTTCCGT
GGAGAATGGCTTGAAGTCCTCGGCTGCGGGGTGATGGAACAACAGCTTGTCAATTCAGCTGGTG
CTCAGGATCGGATCGGCTGGGCTTTTGGCCTGGGATTAGAGAGACTGGCTATGGTCCTCTACGA
CATCCCGGACATCCGCCTTTTCTGGAGTGAGGATGAGCGCTTCCTGAAGCAGTTCCGCCTATCA
GACATCAATCAAAGCGTCAAGTTTCAGGTGCTGGTGGTGGCCCTGGCAGCAGTCCCTGGGAAAG
AACCCTTTCTATGGAATCCCTACATTCGCTGTTTTCATAGATTACCTGGCAAGGATCTGCTAAC
CTCCTTGGCCCAGGAGATTCCTGCGGTGGAGGTGGGGCTGCTGTCCTGGGGATTGCAGAAACAG
CAAGTCCAGCTCAGTAAAATCCACACGTCCAGTGGTAGATGGCATCTGCTGTACTGAGCCGTTC
CAGAGTTAGAGAAGTAGAAGATTGTATGATAAAACATCTTTAGTCCCTTTAATTCCCATACTGT
AATCAGGTACTCATTCTAGCCTGCCATCTTACCTGGAGGTAGAAAACCCTTTAAAGAAGACATC
TGTGGACATTCTCTAAACATTCCATCCTCACTCAAAATTATGAGCCCTGGGGGTAACCTACCCT
TGTCCAAATTGTGCTGTTTGACGCACTTTTATACTCTGTTTCACTAGTCTCAGGAGACAATAAT
ATTTCCATTCATGTTGGGTTGTTAAGTGGGACCATATGTGTACTAAATATGTGTTGTTAAATTA
TATATTCTATGAATACTATGTGCTTAAGAGCTTAAAACTAATTTTTGATGGGTAGGGGAGGAAA
TGCTAGAAATGCTCAAGGCCAATGGTCATGGCTGGTGGTTTATTTTCCAATGAAAATGAGAAAA
GGTAACCCTGGTCTCTCTAGGATGTGCTGTCCCCACTTCTGCAAAAGATACTGTTAGTGCTGAG
TTGAATCCAACACAAATGTGGGAACCAAGCATTGGATGTAAAGAAGTGAAGGGGTCCAGTGTCA
CAGGCTTAGGGACTCTGGGTTTTGGGTGGTAGAACATTGCAGCCCCTTTAAAATACAGCCACTA
CTGTAGCCACAAAGACAGTCCAAACCCAGTAAAGTTCACTCACCTGGTTGTAATAGATAAGTTG
GAAACCCACGTGACACTGACCCTCCTATGTTAATAGATCGTGCATCTGAAAACACAAAGCAACA
TAATATTGGCCAATGAGCTGCCAGTTCTACAAGCTCTGTATGAAACCAGCTGGTGAGATTGCAA
AACAGCTTTCCTATTTGTCTTTTTTCTCACGTCTGCCCTTTCCCTTTGCTTACGAGGAAAGCCC
ATGCCTTCTTCTTTTAAACCAGTATATTCCACCATTAAACTTCTCCTCCTCCCAGGAGGCCTTA
TGCTGAGTATCTCTTGTAAGTAATCAACATTCATTTCATTGTCAGTAGGTAACAGACTTTCTAG
AATTCCTTGTGAGGATCCACAAATCTAATGCTGGACTCCCTGCACATCCTTGACGATCTTCAAG
GGTCATCAAGTCAGATCTCAGACTGAGGTCAGTTTGTGTCCCAGGATCTTAGCTGCCTGTTTTC
TGCACTTTTGTCCTCACACCTTGGCCATAGGGGTCATCTCTTTGGAATCAATACTCTATCAGAT
GAACTATTTTTTTCTAGCATCCCAGGATACTTTTAGCTTTCCCTTTTCTGTTTTTCCCTAGAGA
GCTGGCCCTCGCTATTCACTAGGTTGTGGTGGGTGTTTCTCAACTTCTTCACAGGCTGTATTTG
TCTTGTCATCATAGAGCCTGGAACACACCTTCCTGACCTATGGTTTGTGGTAGGATTATTGACT
TCACAGTGCTGCAAAAGTGATGTATATCCAGGAGAAACTGCCTTGGTTTGGTACAGTGACACAC
ACCTATAGTCCCAGCCCTCAGCATAGTGATAGGATTACCAGTTTGAGCTCAGCCTGAATGGTAT
AAGAACATGTTCCCAAAGCAAGTCTAAATGAAACACAAACTGTAGTTGTGAGTTGTGTCCATGT
GTACATGTGTTCCCATGCTTACCGTGGTGCTGGGGATGAAGCATGCTAGACAAGTGTTCTGCCA
CCAACTACATCTCAGCCTTCAGTGTGAACATTGATCTCTCCCCAGGCTGACAGGACGTGCTCAG
ATCCTCTTTTGTGATGCTGGGTGGCCGGAAGCAACCACGATCCTCTTCAGTGGTGTAGCCATGA
GTCAAAACAACCTACACTCTACAGGGGACTATATTGCCCACATTATCTTTCAGATGTTATGTTT
TGATATTTTTCAACACAATATATGAGTATTTACAAAATACTCATCTCTGAATATATGGGAGGTA
TTCAACACTTAACCATGAAATCAACTTTATTTTACTGTAGCTACTGTAAATGCCTTCTGAGTGG
TTCCTGAGGCCAGCTATGATTCTCTCTAGGTCATGTATATTCCAAGATGGTGATGAAGTTCTTG
TGTCTAAGACTGTGTGTGTATGAAGAGCCTGGGGCTGCAGCTGACTTGCCCAGTGCCCACCCTG
ATCTACATGGCTTGAATGCAATGCCGGAAGCTCCTCAGCCTCTCTGCTCCCATGTCGGCATCCA
CAGTTGGGATCTGGTGTGGGCTTTGTGGAAATCACTGGAACAGTATTTACCACAGTCAGCACAC
AGTAAATGCTCTCGAGTTGGGGGATTAATCGTTCTAGCACATAATGTTCAGCAGCCCTGGCTCA
TCTCTGCCAGTCACCTCAATAATAAAAATCATTTTTTTAATTTTGAAAACAGCACAACTCATAG
CTTCATCAGCAGTGGTGTATTTTTCAGCCTGCAGGCTGGCTTTGGTCACCTCTCCAGATGCGCT
GGGCTGCAGCAGTCCTCAGTGACTGCATAAGCTTGAGATGAAGCACCATGGGACACAGCACATC
TGAGAGTGCCAGTGGCTTCTGCAGAGCCTGGATGCTGACACTGGGAACACACTATCAGGAAAGT
GTTTTGTGAAAATAAATGCTGCATATATTTCTTTTTGACAAGTCATTTCCAAGTGGAATTTTAT
TTTCTGCATTTTGTGGATAAATGTGATTTAAAAGCTTTATGTGTAGAGATACAGGACATTTTTG
AAAAAGGAACGAGTAAATGAGCTGGCAGTCTTAATGATCAGAAGCAGAGACTCTGTCGTCAGAC
AGGCTGGGGTCATAGCTCCACGTAGAGGCTATGTGACTTTGGTGAAGTCAGTGCACTCTAGTTT
CTTTTCTATAAGCTGAGAAAACCATAATTCATATCTGCTAAGATGGGTTTTGATTACTATTTGT
TAAGATGTGTATAGACTCCTTAGATAAGTACCTAGCACACTGAAAGGGCACAAATATGCCAATA
TATTTAAAAGTGACAGTCCTACACATCTGGGTCTTGTGGGTAGACGTGATGTGAGGACGCATGT
GAAGCCAGTGAACAGTGAGATTCCATGTTTCAGACTGAACCTGGAGCACTGGAGCCTGGGGCAC
TGGCTCCCAATTCATTGGGGTTTCTTGAGCATCTTTCCATAACAACAAATATTAGTGCCCCCTG
CACCAGGGTGGCTCTGGCTGATTAGGGGCTCACGTACACAGCCAGTTGAGAACCCAGCACTATC
ATGTGCTCTAGATTCATGAAGTCATGACCATCGTCTCCAACGCAGAGGTCTTCCTTCAGTTAGG
AAGTCA

hide sequence

RefSeq Acc Id:

XM_039095689 ⟹ XP_038951617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,558,487 - 28,951,818 (-)	NCBI
mRatBN7.2	17	28,359,133 - 28,746,216 (-)	NCBI

RefSeq Acc Id:

XM_063276391 ⟹ XP_063132461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,663 (-)	NCBI

RefSeq Acc Id:

XM_063276393 ⟹ XP_063132463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,799 (-)	NCBI

RefSeq Acc Id:

XM_063276394 ⟹ XP_063132464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,799 (-)	NCBI

RefSeq Acc Id:

XM_063276395 ⟹ XP_063132465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,663 (-)	NCBI

RefSeq Acc Id:

XM_063276396 ⟹ XP_063132466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,817 (-)	NCBI

RefSeq Acc Id:

XM_063276397 ⟹ XP_063132467

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,664 (-)	NCBI

RefSeq Acc Id:

XM_063276398 ⟹ XP_063132468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,664 (-)	NCBI

RefSeq Acc Id:

XM_063276399 ⟹ XP_063132469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,818 (-)	NCBI

RefSeq Acc Id:

XM_063276400 ⟹ XP_063132470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,951,659 (-)	NCBI

RefSeq Acc Id:

XM_063276401 ⟹ XP_063132471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,653 (-)	NCBI

RefSeq Acc Id:

XM_063276403 ⟹ XP_063132473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,799 (-)	NCBI

RefSeq Acc Id:

XM_063276404 ⟹ XP_063132474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,817 (-)	NCBI

RefSeq Acc Id:

XM_063276405 ⟹ XP_063132475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,799 (-)	NCBI

RefSeq Acc Id:

XM_063276406 ⟹ XP_063132476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,654 (-)	NCBI

RefSeq Acc Id:

XM_063276407 ⟹ XP_063132477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,737 - 28,951,654 (-)	NCBI

RefSeq Acc Id:

XM_063276408 ⟹ XP_063132478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,524,891 - 28,862,870 (-)	NCBI

RefSeq Acc Id:

XR_010058866

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	28,558,487 - 28,951,818 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013157	(Get FASTA)	NCBI Sequence Viewer
	NP_001427175	(Get FASTA)	NCBI Sequence Viewer
	NP_001427176	(Get FASTA)	NCBI Sequence Viewer
	NP_001427177	(Get FASTA)	NCBI Sequence Viewer
	NP_001427178	(Get FASTA)	NCBI Sequence Viewer
	NP_001427179	(Get FASTA)	NCBI Sequence Viewer
	XP_006253885	(Get FASTA)	NCBI Sequence Viewer
	XP_006253887	(Get FASTA)	NCBI Sequence Viewer
	XP_006253888	(Get FASTA)	NCBI Sequence Viewer
	XP_038951617	(Get FASTA)	NCBI Sequence Viewer
	XP_063132461	(Get FASTA)	NCBI Sequence Viewer
	XP_063132463	(Get FASTA)	NCBI Sequence Viewer
	XP_063132464	(Get FASTA)	NCBI Sequence Viewer
	XP_063132465	(Get FASTA)	NCBI Sequence Viewer
	XP_063132466	(Get FASTA)	NCBI Sequence Viewer
	XP_063132467	(Get FASTA)	NCBI Sequence Viewer
	XP_063132468	(Get FASTA)	NCBI Sequence Viewer
	XP_063132469	(Get FASTA)	NCBI Sequence Viewer
	XP_063132470	(Get FASTA)	NCBI Sequence Viewer
	XP_063132471	(Get FASTA)	NCBI Sequence Viewer
	XP_063132473	(Get FASTA)	NCBI Sequence Viewer
	XP_063132474	(Get FASTA)	NCBI Sequence Viewer
	XP_063132475	(Get FASTA)	NCBI Sequence Viewer
	XP_063132476	(Get FASTA)	NCBI Sequence Viewer
	XP_063132477	(Get FASTA)	NCBI Sequence Viewer
	XP_063132478	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78956	(Get FASTA)	NCBI Sequence Viewer
	EDL98284	(Get FASTA)	NCBI Sequence Viewer
	EDL98285	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021660
	ENSRNOP00000021660.5
	ENSRNOP00000069318
	ENSRNOP00000079964
GenBank Protein	Q6AYQ3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013157 ⟸ NM_001013139

- UniProtKB:

Q6AYQ3 (UniProtKB/Swiss-Prot), A0A8I6AGZ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVCLAFIRAAHEHLYLVRKVSHVCRCHQHRAWGSRPAASQFAVQGAPGRVLELLGKSYPQDDHT
NLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMGRSRTPLFSVYDQLSPVVTTWQNFDS
LLIPADHPSRKKGDNYYLNRGHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRRDQIDSQHYPVFH
QLEGVRLFSKHELFAGVKDGESLQLFEESSRSAHKQETHTMEAVKLVEFDLKQVLTRLVTHLFG
DGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLA
MVLYDIPDIRLFWSEDERFLKQFRLSDINQSVKFQRWFFQEERATGIQRKMGRQLCPFSKYPAV
FNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSHCYRITYRHMERTLSQ
REVSSVHQAVQEAAVQLLGVEGRF

hide sequence

RefSeq Acc Id:

XP_006253887 ⟸ XM_006253825

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVCLAFIRAAHEHLYLVRKVSHVCRCHQHRAWGSRPAASQFAVQGAPGRVLELLGKSYPQDDHT
NLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMGRSRTPLFSVYDQLSPVVTTWQNFDS
LLIPADHPSRKKGDNYYLNRGHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRRDQIDSQHYPVFH
QLEGVRLFSKHELFAGVKDGESLQLFEESSRSAHKQETHTMEAVKLVEFDLKQVLTRLVTHLFG
DGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLA
MVLYDIPDIRLFWSEDERFLKQFRLSDINQSVKFQPFSKYPAVFNDISFWLPSENYTENDFYDI
VRTVGGDLVEKVDLIDKFEHPKTHRTSHCYRITYRHMERTLSQREVSSVHQAVQEAAVQLLGVE
GRF

hide sequence

RefSeq Acc Id:	XP_006253885 ⟸ XM_006253823
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVCLAFIRAAHEHLYLVRKVSHVCRCHQHRAWGSRPAASQFAVQGAPGRVLELLGKSYPQDDHT NLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMGRSRTPLFSVYDQLSPVVTTWQNFDS LLIPADHPSRKKGDNYYLNRGHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRRDQIDSQHYPVFH QLEGVRLFSKHELFAGVKDGESLQLFEESSRSAHKQETHTMEAVKLVEFDLKQVLTRLVTHLFG DGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLA MVLYDIPDIRLFWSEDERFLKQFRLSDINQSVKFQRWFFQEERATGIQRKMGRQLCPFSKYPAV FNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKIMVYEAVITVKRHVFMKLQCG RGKCQRCNGVLKPSGEQAALRQIQLQL hide sequence

RefSeq Acc Id:	XP_006253888 ⟸ XM_006253826
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVCLAFIRAAHEHLYLVRKVSHVCRCHQHRAWGSRPAASQFAVQGAPGRVLELLGKSYPQDDHT NLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMGRSRTPLFSVYDQLSPVVTTWQNFDS LLIPADHPSRKKGDNYYLNRGHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRRDQIDSQHYPVFH QLEGVRLFSKHELFAGVKDGESLQLFEESSRSAHKQETHTMEAVKLVEFDLKQVLTRLVTHLFG DGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLA MVLYDIPDIRLFWSEDERFLKQFRLSDINQSVKFQVLVVALAAVPGKEPFLWNPYIRCFHRLPG KDLLTSLAQEIPAVEVGLLSWGLQKQQVQLSKIHTSSGRWHLLY hide sequence

Ensembl Acc Id:

ENSRNOP00000069318 ⟸ ENSRNOT00000080031

Ensembl Acc Id:

ENSRNOP00000021660 ⟸ ENSRNOT00000021660

RefSeq Acc Id:	XP_038951617 ⟸ XM_039095689
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000079964 ⟸ ENSRNOT00000113971

Ensembl Acc Id:

ENSRNOP00000095619 ⟸ ENSRNOT00000096528

Ensembl Acc Id:

ENSRNOP00000092101 ⟸ ENSRNOT00000108459

RefSeq Acc Id:	XP_063132474 ⟸ XM_063276404
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AGZ1 (UniProtKB/TrEMBL), A6J7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132473 ⟸ XM_063276403
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063132475 ⟸ XM_063276405
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063132477 ⟸ XM_063276407
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AGZ1 (UniProtKB/TrEMBL), A6J7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132476 ⟸ XM_063276406
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AGZ1 (UniProtKB/TrEMBL), A6J7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132471 ⟸ XM_063276401
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063132469 ⟸ XM_063276399
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063132466 ⟸ XM_063276396
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132464 ⟸ XM_063276394
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132463 ⟸ XM_063276393
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132468 ⟸ XM_063276398
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132467 ⟸ XM_063276397
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132461 ⟸ XM_063276391
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132465 ⟸ XM_063276395
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132470 ⟸ XM_063276400
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZNT2 (UniProtKB/TrEMBL), A0A0G2JV20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132478 ⟸ XM_063276408
- Peptide Label:	isoform X6

Protein Domains

Aminoacyl-transfer RNA synthetases class-II family FDX-ACB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYQ3-F1-model_v2	AlphaFold	Q6AYQ3	1-472	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700400

Promoter ID:

EPDNEW_R10923

Type:

initiation region

Name:

Fars2_1

Description:

phenylalanyl-tRNA synthetase 2, mitochondrial

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	29,438,714 - 29,438,774	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309416	AgrOrtholog
BioCyc Gene	G2FUF-9635	BioCyc
BioCyc Pathway	TRNA-CHARGING-PWY [tRNA charging]	BioCyc
BioCyc Pathway Image	TRNA-CHARGING-PWY	BioCyc
Ensembl Genes	ENSRNOG00000016135	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000021660	ENTREZGENE
	ENSRNOT00000021660.8	UniProtKB/Swiss-Prot
	ENSRNOT00000080031	ENTREZGENE
	ENSRNOT00000113971	ENTREZGENE
Gene3D-CATH	3.30.70.380	UniProtKB/Swiss-Prot
	Bira Bifunctional Protein, Domain 2	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7110464	IMAGE-MGC_LOAD
InterPro	aa-tRNA-synth_II	UniProtKB/Swiss-Prot
	aa-tRNA-synth_II/BPL/LPL	UniProtKB/Swiss-Prot
	Fdx_antiC-bd	UniProtKB/Swiss-Prot
	Fdx_antiC-bd_sf	UniProtKB/Swiss-Prot
	Phe-tRNA-synth_IIc_mito	UniProtKB/Swiss-Prot
	Phenylalanyl-tRNA_Synthase	UniProtKB/Swiss-Prot
KEGG Report	rno:306879	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93815	IMAGE-MGC_LOAD
NCBI Gene	306879	ENTREZGENE
PANTHER	PHENYLALANYL-TRNA SYNTHETASE	UniProtKB/Swiss-Prot
	PTHR11538:SF41	UniProtKB/Swiss-Prot
Pfam	FDX-ACB	UniProtKB/Swiss-Prot
	tRNA-synt_2d	UniProtKB/Swiss-Prot
PhenoGen	Fars2	PhenoGen
PROSITE	AA_TRNA_LIGASE_II	UniProtKB/Swiss-Prot
	FDX_ACB	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000016135	RatGTEx
SMART	FDX-ACB	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54991	UniProtKB/Swiss-Prot
	SSF55681	UniProtKB/Swiss-Prot
UniProt	A0A0G2JV20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZNT2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGZ1	ENTREZGENE
	A0A8I6ANQ6_RAT	UniProtKB/TrEMBL
	A6J7D4	ENTREZGENE, UniProtKB/TrEMBL
	A6J7D5_RAT	UniProtKB/TrEMBL
	Q6AYQ3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-25	Fars2	phenylalanyl-tRNA synthetase 2, mitochondrial	Fars2	phenylalanine-tRNA synthetase 2 (mitochondrial)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Fars2	phenylalanine-tRNA synthetase 2 (mitochondrial)	Fars1	phenylalanine-tRNA synthetase 1 (mitochondrial)	Symbol and Name updated	1299863	APPROVED
2005-12-06	Fars1	phenylalanine-tRNA synthetase 1 (mitochondrial)	Fars1_predicted	phenylalanine-tRNA synthetase 1 (mitochondrial) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Fars1_predicted	phenylalanine-tRNA synthetase 1 (mitochondrial) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways