Advanced Search (OLGA)

Gene: Ing4 (inhibitor of growth family, member 4) Rattus norvegicus

Analyze

Symbol:

Ing4

Name:

inhibitor of growth family, member 4

RGD ID:

1309407

Description:

Predicted to enable histone H3K4me3 reader activity and transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in several processes, including DNA replication-dependent chromatin disassembly; positive regulation of DNA damage response, signal transduction by p53 class mediator; and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of with a negative effect on regulation of cell cycle G2/M phase transition. Predicted to be located in nucleoplasm. Predicted to be part of histone acetyltransferase complex. Predicted to be active in nucleus. Orthologous to human ING4 (inhibitor of growth family member 4); INTERACTS WITH 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

inhibitor of growth protein 4; LOC297597; MGC156688

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ING4 (inhibitor of growth family member 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ing4 (inhibitor of growth family, member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ing4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ING4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ING4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ing4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ING4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ING4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ing4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ing4 (inhibitor of growth family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ING5 (inhibitor of growth family member 5)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	ING4 (inhibitor of growth family member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ing4 (inhibitor of growth family, member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ing4 (inhibitor of growth family, member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PHO23	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	PHO23	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Ing5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ing-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	lsy-13	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	lsy-13	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YNG2	Alliance	DIOPT (InParanoid\|OMA\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ing4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	159,528,189 - 159,536,761 (+)	Ensembl				GRCr8
mRatBN7.2	4	157,841,882 - 157,850,519 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,841,951 - 157,850,265 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	164,070,998 - 164,079,555 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,853,920 - 159,862,473 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,490,206 - 158,498,766 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,554,729 - 157,563,353 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,554,794 - 157,563,352 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	224,572,418 - 224,581,191 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	161,161,044 - 161,169,603 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,578,911 - 146,587,470 (+)	NCBI		Celera
RGSC_v3.1	4	161,405,965 - 161,414,284 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

Lymphatic Metastasis (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) chloride (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

lead diacetate (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

okadaic acid (ISO)

paracetamol (ISO)

pinostrobin (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sirolimus (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

chromatin remodeling (IEA)

DNA replication-dependent chromatin disassembly (IEA,ISO)

negative regulation of cell population proliferation (IEA,ISO)

negative regulation of DNA-templated transcription (IEA,ISO)

negative regulation of growth (IEA,ISO)

positive regulation of apoptotic process (IBA,IEA,ISO)

positive regulation of DNA damage response, signal transduction by p53 class mediator (IEA,ISO)

positive regulation of DNA-templated transcription (IEA)

protein acetylation (ISO)

regulation of cell cycle (IEA,ISO)

regulation of cell cycle G2/M phase transition (ISO)

regulation of cell growth (IEA,ISO)

regulation of DNA biosynthetic process (IEA,ISO)

regulation of DNA-templated transcription (IBA,IEA,ISO)

Cellular Component

histone acetyltransferase complex (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

histone H3K14 acetyltransferase activity (IEA,ISO)

histone H3K4me3 reader activity (IEA,ISO)

histone H4K12 acetyltransferase activity (IEA,ISO)

histone H4K16 acetyltransferase activity (ISO)

histone H4K5 acetyltransferase activity (IEA,ISO)

histone H4K8 acetyltransferase activity (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

transcription coactivator activity (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11888890	PMID:12477932	PMID:12750254	PMID:15029197	PMID:15251430	PMID:16387653	PMID:16728974	PMID:17517644

Genomics

Comparative Map Data

Ing4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	159,528,189 - 159,536,761 (+)	Ensembl				GRCr8
mRatBN7.2	4	157,841,882 - 157,850,519 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,841,951 - 157,850,265 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	164,070,998 - 164,079,555 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,853,920 - 159,862,473 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,490,206 - 158,498,766 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,554,729 - 157,563,353 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,554,794 - 157,563,352 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	224,572,418 - 224,581,191 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	161,161,044 - 161,169,603 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,578,911 - 146,587,470 (+)	NCBI		Celera
RGSC_v3.1	4	161,405,965 - 161,414,284 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

ING4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	6,650,301 - 6,663,119 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	6,650,300 - 6,663,148 (-)	Ensembl			hg38	GRCh38
GRCh37	12	6,759,467 - 6,772,285 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	6,629,707 - 6,642,565 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	6,629,706 - 6,642,565	NCBI
Celera	12	8,376,682 - 8,389,327 (-)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	6,613,009 - 6,625,613 (-)	NCBI		HuRef
CHM1_1	12	6,758,703 - 6,771,307 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	6,660,668 - 6,673,486 (-)	NCBI		T2T-CHM13v2.0

Ing4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	125,016,811 - 125,026,228 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	125,016,723 - 125,026,228 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	125,039,848 - 125,049,265 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	125,039,760 - 125,049,265 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	124,989,866 - 124,999,282 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	125,005,467 - 125,014,883 (+)	NCBI		MGSCv36	mm8
Celera	6	126,709,558 - 126,718,979 (+)	NCBI		Celera
Cytogenetic Map	6	F2	NCBI
cM Map	6	59.17	NCBI

Ing4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,263,647 - 4,274,476 (-)	Ensembl
ChiLan1.0	NW_004955413	4,263,647 - 4,274,476 (-)	NCBI	ChiLan1.0	ChiLan1.0

ING4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	12,213,323 - 12,225,950 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	12,210,081 - 12,222,630 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	6,782,402 - 6,795,035 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	6,698,842 - 6,710,955 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	6,698,843 - 6,710,955 (-)	Ensembl			panPan2	panpan1.1

ING4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	38,371,656 - 38,379,251 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	38,371,766 - 38,379,029 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,237,208 - 8,244,736 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,725,270 - 38,732,113 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	27	38,598,523 - 38,606,055 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,640,052 - 38,647,581 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	7,716,102 - 7,723,646 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ing4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	102,472,892 - 102,480,697 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936709	1,140,345 - 1,149,843 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936709	1,140,485 - 1,147,982 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ING4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	64,027,855 - 64,036,773 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	64,027,789 - 64,036,671 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	66,541,628 - 66,546,214 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ING4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	6,683,994 - 6,696,888 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	6,684,897 - 6,696,852 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	1,528,890 - 1,541,474 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ing4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	3,353,489 - 3,362,430 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624860	3,353,443 - 3,362,541 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ing4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	22,846,757 - 22,855,425 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ing4
28 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	366
Count of miRNA genes:	209
Interacting mature miRNAs:	243
Transcripts:	ENSRNOT00000024116
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

RH127593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	157,850,174 - 157,850,371 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,563,009 - 157,563,205	NCBI	Rnor6.0
Rnor_5.0	4	224,580,847 - 224,581,043	UniSTS	Rnor5.0
RGSC_v3.4	4	161,169,259 - 161,169,455	UniSTS	RGSC3.4
Celera	4	146,587,126 - 146,587,322	UniSTS
RH 3.4 Map	4	997.6	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC127511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024116 ⟹ ENSRNOP00000024116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,528,189 - 159,536,761 (+)	Ensembl
mRatBN7.2 Ensembl	4	157,841,951 - 157,850,265 (+)	Ensembl
Rnor_6.0 Ensembl	4	157,554,794 - 157,563,352 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136814 ⟹ ENSRNOP00000105955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,528,189 - 159,536,761 (+)	Ensembl

RefSeq Acc Id:

NM_001079887 ⟹ NP_001073356

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,528,203 - 159,536,762 (+)	NCBI
mRatBN7.2	4	157,841,960 - 157,850,519 (+)	NCBI
Rnor_6.0	4	157,554,794 - 157,563,353 (+)	NCBI
Rnor_5.0	4	224,572,418 - 224,581,191 (+)	NCBI
RGSC_v3.4	4	161,161,044 - 161,169,603 (+)	RGD
Celera	4	146,578,911 - 146,587,470 (+)	RGD

Sequence:

show sequence

CAAGATGGCTGCTGGGATGTATTTGGAACATTATCTGGACAGTATTGAAAACCTCCCGTTTGAA
TTGCAGAGAAACTTTCAGCTCATGAGGGACCTAGACCAAAGGACAGAGGACCTGAAGGCTGAAA
TTGACAAGTTGGCCACTGAATATATGAGTAGCGCCCGCAGCCTGAGCTCCGAGGAAAAACTGGC
CCTTCTCAGACAGATCCAGGAGGCCTATGGCAAATGCAAGGAATTTGGTGACGACAAGGTGCAG
CTGGCCATGCAGACCTATGAGATGGTGGACAAACACATTCGGCGGCTGGACACAGACCTGGCCC
GTTTTGAGGCTGATCTGAAGGAAAAACAGATCGAGTCAAGTGACTATGACAGCTCTTCCAGCAA
AGGCCGGACCCAAAAGGAGAAAAAAGCTGCCCGTGCCCGTTCCAAAGGGAAAAACTCAGATGAA
GAAGCCCCCAAGGCTGCCCAGAAAAAGTTAAAACTTGTGCGCACAAGTCCTGAGTATGGGATGC
CCTCAGTGACCTTTGGCAGTGTCCACCCCTCTGATGTGTTGGATATGCCTGTGGATCCCAACGA
ACCCACATATTGCCTTTGTCACCAGGTCTCCTATGGAGAGATGATTGGCTGTGACAACCCAGAC
TGTTCCATTGAGTGGTTCCACTTTGCCTGTGTGGGGCTGACAACCAAGCCTCGAGGGAAATGGT
TTTGCCCACGCTGCTCCCAAGAACGGAAGAAGAAATAGGTTTCCTTGGATTCCATCAGAGACTT
CTTCTGAATCCCCCTGACCTGGGCTAGTGGACAGAGAGGGGTGCCTGTGCTGGGGATGGGGGTC
CAGGGAGATGGGGACAGTGCAGTACCGTCATCCCTTCTCCCTTCTCCCCATTCGGTGCTGAGGC
TGCATCCAAACCCCAGTAGAGAAGGTGCCACAGCCACTGACGGGATGTGCTCTCCTTCCCCGCC
TCGCCCTCAGAGGAAGTAGTCCCACTCACTGTCCTTTTGCCTCCGTGGGGAGGTTGGTGCTGTG
TTTCAGAGGGAGGGTCCTCTTCATTCCCCTTGCTTTGACTTAGAAGTGGGCAGTGGAGTGGGCA
CTCTCCCAGTCCCCTCAATCCTCCTTCCCCCATTGGGAACTAGGTAGGACAGACTGCCTTCTCT
GTGCTCTTCCTTTTCTCCATGGGGAGGGTCTTCTAGGTCATTTGGGCTGTGGCCTAGTTGAGTG
GTTACCCCAACCTCTATGGCCCGGGGAATTCTGCTGACTTTGAATGGGAGAGGGAAGGTGGAGC
CCAGATAGCTCACATGTAAAGGGAGTCGGGGTAGTAAATAAAAGCTATCCACGCTAGCCTCTGT
GTTTATTGTAGAGACTGTTTACGTATATGTGGTAAGCATTCTTTTTGCATTCTCTGGATTGGAT
GAGAGGCAGGAGGATGGCTTGCCAGAAATAGGACAAGACATAAAACCCAAAATGGTCTTTGTCC
TGTGGTATCCTCAGCTTCTCCACCTGGAGGGTGCCGGCATCGGGGACTCAGAACTTTGTAATTA
CGAGTACGCGCTCCGCGAAACACCTTTCACTCAATAAATCATGTATTTGCTTTAAAAAAAAAAA
AAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237349 ⟹ XP_006237411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI
mRatBN7.2	4	157,841,912 - 157,850,519 (+)	NCBI
Rnor_6.0	4	157,554,729 - 157,563,353 (+)	NCBI
Rnor_5.0	4	224,572,418 - 224,581,191 (+)	NCBI

Sequence:

show sequence

AATGGTCACAGCGCCTGTCGTTTCAGTCACTTCCGGGGAGGATCGGAAGTTGCTTTGTTTTGCT
TCAAGATGGCTGCTGGGATGTATTTGGAACATTATCTGGACAGTATTGAAAACCTCCCGTTTGA
ATTGCAGAGAAACTTTCAGCTCATGAGGGACCTAGACCAAAGGACAGAGGACCTGAAGGCTGAA
ATTGACAAGTTGGCCACTGAATATATGAGTAGCGCCCGCAGCCTGAGCTCCGAGGAAAAACTGG
CCCTTCTCAGACAGATCCAGGAGGCCTATGGCAAATGCAAGGAATTTGGTGACGACAAGGTGCA
GCTGGCCATGCAGACCTATGAGATGGTGGACAAACACATTCGGCGGCTGGACACAGACCTGGCC
CGTTTTGAGGCTGATCTGAAGGAAAAACAGATCGAGTCAAGTGACTATGACAGCTCTTCCAGCA
AAGGCAAAAGGAAAGGCCGGACCCAAAAGGAGAAAAAAGCTGCCCGTGCCCGTTCCAAAGGGAA
AAACTCAGATGAAGAAGCCCCCAAGGCTGCCCAGAAAAAGTTAAAACTTGTGCGCACAAGTCCT
GAGTATGGGATGCCCTCAGTGACCTTTGGCAGTGTCCACCCCTCTGATGTGTTGGATATGCCTG
TGGATCCCAACGAACCCACATATTGCCTTTGTCACCAGGTCTCCTATGGAGAGATGATTGGCTG
TGACAACCCAGACTGTTCCATTGAGTGGTTCCACTTTGCCTGTGTGGGGCTGACAACCAAGCCT
CGAGGGAAATGGTTTTGCCCACGCTGCTCCCAAGAACGGAAGAAGAAATAGGTTTCCTTGGATT
CCATCAGAGACTTCTTCTGAATCCCCCTGACCTGGGCTAGTGGACAGAGAGGGGTGCCTGTGCT
GGGGATGGGGGTCCAGGGAGATGGGGACAGTGCAGTACCGTCATCCCTTCTCCCTTCTCCCCAT
TCGGTGCTGAGGCTGCATCCAAACCCCAGTAGAGAAGGTGCCACAGCCACTGACGGGATGTGCT
CTCCTTCCCCGCCTCGCCCTCAGAGGAAGTAGTCCCACTCACTGTCCTTTTGCCTCCGTGGGGA
GGTTGGTGCTGTGTTTCAGAGGGAGGGTCCTCTTCATTCCCCTTGCTTTGACTTAGAAGTGGGC
AGTGGAGTGGGCACTCTCCCAGTCCCCTCAATCCTCCTTCCCCCATTGGGAACTAGGTAGGACA
GACTGCCTTCTCTGTGCTCTTCCTTTTCTCCATGGGGAGGGTCTTCTAGGTCATTTGGGCTGTG
GCCTAGTTGAGTGGTTACCCCAACCTCTATGGCCCGGGGAATTCTGCTGACTTTGAATGGGAGA
GGGAAGGTGGAGCCCAGATAGCTCACATGTAAAGGGAGTCGGGGTAGTAAATAAAAGCTATCCA
CGCTAGCCTCTGTGTTTATTGTAGAGACTGTTTACGTATATGTGGTAAGCATTCTTTTTGCATT
CTCTGGATTGGATGAGAGGCAGGAGGATGGCTTGCCAGAAATAGGACAAGACATAAAACCCAAA
ATGGTCTTTGTCCTGTGGTATCCTCAGCTTCTCCACCTGGAGGGTGCCGGCATCGGGGACTCAG
AACTTTGTAATTACGAGTACGCGCTCCGCGAAACACCTTTCACTCAATAAATCATGTATTTGCT
TTA

hide sequence

RefSeq Acc Id:

XM_006237350 ⟹ XP_006237412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI
mRatBN7.2	4	157,841,912 - 157,850,519 (+)	NCBI
Rnor_6.0	4	157,554,729 - 157,563,353 (+)	NCBI
Rnor_5.0	4	224,572,418 - 224,581,191 (+)	NCBI

Sequence:

show sequence

AATGGTCACAGCGCCTGTCGTTTCAGTCACTTCCGGGGAGGATCGGAAGTTGCTTTGTTTTGCT
TCAAGATGGCTGCTGGGATGTATTTGGAACATTATCTGGACAGTATTGAAAACCTCCCGTTTGA
ATTGCAGAGAAACTTTCAGCTCATGAGGGACCTAGACCAAAGGACAGAGGACCTGAAGGCTGAA
ATTGACAAGTTGGCCACTGAATATATGAGTAGCGCCCGCAGCCTGAGCTCCGAGGAAAAACTGG
CCCTTCTCAGACAGATCCAGGAGGCCTATGGCAAATGCAAGGAATTTGGTGACGACAAGGTGCA
GCTGGCCATGCAGACCTATGAGATGGTGGACAAACACATTCGGCGGCTGGACACAGACCTGGCC
CGTTTTGAGGCTGATCTGAAGGAAAAACAGATCGAGTCAAGTGACTATGACAGCTCTTCCAGCA
AAGGCAAAAGGAGCCGGACCCAAAAGGAGAAAAAAGCTGCCCGTGCCCGTTCCAAAGGGAAAAA
CTCAGATGAAGAAGCCCCCAAGGCTGCCCAGAAAAAGTTAAAACTTGTGCGCACAAGTCCTGAG
TATGGGATGCCCTCAGTGACCTTTGGCAGTGTCCACCCCTCTGATGTGTTGGATATGCCTGTGG
ATCCCAACGAACCCACATATTGCCTTTGTCACCAGGTCTCCTATGGAGAGATGATTGGCTGTGA
CAACCCAGACTGTTCCATTGAGTGGTTCCACTTTGCCTGTGTGGGGCTGACAACCAAGCCTCGA
GGGAAATGGTTTTGCCCACGCTGCTCCCAAGAACGGAAGAAGAAATAGGTTTCCTTGGATTCCA
TCAGAGACTTCTTCTGAATCCCCCTGACCTGGGCTAGTGGACAGAGAGGGGTGCCTGTGCTGGG
GATGGGGGTCCAGGGAGATGGGGACAGTGCAGTACCGTCATCCCTTCTCCCTTCTCCCCATTCG
GTGCTGAGGCTGCATCCAAACCCCAGTAGAGAAGGTGCCACAGCCACTGACGGGATGTGCTCTC
CTTCCCCGCCTCGCCCTCAGAGGAAGTAGTCCCACTCACTGTCCTTTTGCCTCCGTGGGGAGGT
TGGTGCTGTGTTTCAGAGGGAGGGTCCTCTTCATTCCCCTTGCTTTGACTTAGAAGTGGGCAGT
GGAGTGGGCACTCTCCCAGTCCCCTCAATCCTCCTTCCCCCATTGGGAACTAGGTAGGACAGAC
TGCCTTCTCTGTGCTCTTCCTTTTCTCCATGGGGAGGGTCTTCTAGGTCATTTGGGCTGTGGCC
TAGTTGAGTGGTTACCCCAACCTCTATGGCCCGGGGAATTCTGCTGACTTTGAATGGGAGAGGG
AAGGTGGAGCCCAGATAGCTCACATGTAAAGGGAGTCGGGGTAGTAAATAAAAGCTATCCACGC
TAGCCTCTGTGTTTATTGTAGAGACTGTTTACGTATATGTGGTAAGCATTCTTTTTGCATTCTC
TGGATTGGATGAGAGGCAGGAGGATGGCTTGCCAGAAATAGGACAAGACATAAAACCCAAAATG
GTCTTTGTCCTGTGGTATCCTCAGCTTCTCCACCTGGAGGGTGCCGGCATCGGGGACTCAGAAC
TTTGTAATTACGAGTACGCGCTCCGCGAAACACCTTTCACTCAATAAATCATGTATTTGCTTTA

hide sequence

RefSeq Acc Id:

XM_039107453 ⟹ XP_038963381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI
mRatBN7.2	4	157,841,912 - 157,850,519 (+)	NCBI

RefSeq Acc Id:

XR_005503203

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI
mRatBN7.2	4	157,841,882 - 157,850,519 (+)	NCBI

RefSeq Acc Id:

XR_005503204

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI
mRatBN7.2	4	157,841,886 - 157,850,519 (+)	NCBI

RefSeq Acc Id:

XR_005503205

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,528,183 - 159,536,762 (+)	NCBI
mRatBN7.2	4	157,841,891 - 157,850,519 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001073356	(Get FASTA)	NCBI Sequence Viewer
	XP_006237411	(Get FASTA)	NCBI Sequence Viewer
	XP_006237412	(Get FASTA)	NCBI Sequence Viewer
	XP_038963381	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI27512	(Get FASTA)	NCBI Sequence Viewer
	EDM01883	(Get FASTA)	NCBI Sequence Viewer
	EDM01884	(Get FASTA)	NCBI Sequence Viewer
	EDM01885	(Get FASTA)	NCBI Sequence Viewer
	EDM01886	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024116
	ENSRNOP00000024116.8
	ENSRNOP00000105955.1

RefSeq Acc Id:

NP_001073356 ⟸ NM_001079887

- UniProtKB:

A1L130 (UniProtKB/TrEMBL), F1LLY0 (UniProtKB/TrEMBL), A6ILQ5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLAL
LRQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKG
RTQKEKKAARARSKGKNSDEEAPKAAQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEP
TYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKKK

hide sequence

RefSeq Acc Id:	XP_006237411 ⟸ XM_006237349
- Peptide Label:	isoform X1
- UniProtKB:	A6ILQ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLAL LRQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKG KRKGRTQKEKKAARARSKGKNSDEEAPKAAQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVD PNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKKK hide sequence

RefSeq Acc Id:	XP_006237412 ⟸ XM_006237350
- Peptide Label:	isoform X2
- UniProtKB:	A6ILQ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLAL LRQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKG KRSRTQKEKKAARARSKGKNSDEEAPKAAQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDP NEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKKK hide sequence

Ensembl Acc Id:

ENSRNOP00000024116 ⟸ ENSRNOT00000024116

RefSeq Acc Id:	XP_038963381 ⟸ XM_039107453
- Peptide Label:	isoform X3
- UniProtKB:	A0A8J8YN55 (UniProtKB/TrEMBL), A6ILQ5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105955 ⟸ ENSRNOT00000136814

Protein Domains

Inhibitor of growth protein N-terminal histone- PHD-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A1L130-F1-model_v2	AlphaFold	A1L130	1-245	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693401

Promoter ID:

EPDNEW_R3926

Type:

multiple initiation site

Name:

Ing4_1

Description:

inhibitor of growth family, member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	157,554,785 - 157,554,845	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309407	AgrOrtholog
BioCyc Gene	G2FUF-43019	BioCyc
Ensembl Genes	ENSRNOG00000023363	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024116	ENTREZGENE
	ENSRNOT00000024116.8	UniProtKB/TrEMBL
	ENSRNOT00000136814.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	6.10.140.1740	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7301640	IMAGE-MGC_LOAD
	IMAGE:7376723	IMAGE-MGC_LOAD
InterPro	ING_fam	UniProtKB/TrEMBL
	ING_N	UniProtKB/TrEMBL
	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:297597	UniProtKB/TrEMBL
MGC_CLONE	MGC:105796	IMAGE-MGC_LOAD
	MGC:156688	IMAGE-MGC_LOAD
NCBI Gene	297597	ENTREZGENE
PANTHER	INHIBITOR OF GROWTH PROTEIN 4	UniProtKB/TrEMBL
	PTHR10333	UniProtKB/TrEMBL
Pfam	ING	UniProtKB/TrEMBL
PhenoGen	Ing4	PhenoGen
PROSITE	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023363	RatGTEx
SMART	ING	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
Superfamily-SCOP	FYVE_PHD_ZnF	UniProtKB/TrEMBL
UniProt	A0A8J8YN55	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJQ3_RAT	UniProtKB/TrEMBL
	A1L130	ENTREZGENE, UniProtKB/TrEMBL
	A6ILQ5	ENTREZGENE, UniProtKB/TrEMBL
	A6ILQ6_RAT	UniProtKB/TrEMBL
	A6ILQ7_RAT	UniProtKB/TrEMBL
	F1LLY0	ENTREZGENE
UniProt Secondary	F1LLY0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ing4	inhibitor of growth family, member 4	Ing4_predicted	inhibitor of growth family, member 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ing4_predicted	inhibitor of growth family, member 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD