Ell2 (elongation factor for RNA polymerase II 2) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ell2 (elongation factor for RNA polymerase II 2) Rattus norvegicus
Analyze
Symbol: Ell2
Name: elongation factor for RNA polymerase II 2
RGD ID: 1309296
Description: Predicted to enable cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription elongation by RNA polymerase II and snRNA transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Orthologous to human ELL2 (elongation factor for RNA polymerase II 2); PARTICIPATES IN RNA polymerase II transcription elongation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: elongation factor RNA for polymerase II 2; elongation factor RNA polymerase II 2; LOC309918; RNA polymerase II elongation factor ELL2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr826,910,446 - 6,990,654 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl26,921,771 - 7,016,199 (+)EnsemblGRCr8
mRatBN7.225,189,375 - 5,258,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl25,189,971 - 5,258,781 (+)EnsemblmRatBN7.2
Rnor_6.022,456,189 - 2,525,590 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl22,456,735 - 2,524,237 (+)Ensemblrn6Rnor6.0
Rnor_5.022,449,357 - 2,519,171 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.422,724,984 - 2,794,397 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera21,661,941 - 1,730,615 (+)NCBICelera
RGSC_v3.122,745,161 - 2,813,837 (+)NCBI
Cytogenetic Map2q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
diquat  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzalutamide  (ISO)
folic acid  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
L-methionine  (ISO)
leflunomide  (EXP,ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
oxycodone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (EXP)
phenol  (ISO)
phenylmercury acetate  (ISO)
phosgene  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rimonabant  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The super elongation complex (SEC) family in transcriptional control. Luo Z, etal., Nat Rev Mol Cell Biol. 2012 Sep;13(9):543-7. doi: 10.1038/nrm3417. Epub 2012 Aug 16.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:22195968  


Genomics

Comparative Map Data
Ell2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr826,910,446 - 6,990,654 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl26,921,771 - 7,016,199 (+)EnsemblGRCr8
mRatBN7.225,189,375 - 5,258,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl25,189,971 - 5,258,781 (+)EnsemblmRatBN7.2
Rnor_6.022,456,189 - 2,525,590 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl22,456,735 - 2,524,237 (+)Ensemblrn6Rnor6.0
Rnor_5.022,449,357 - 2,519,171 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.422,724,984 - 2,794,397 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera21,661,941 - 1,730,615 (+)NCBICelera
RGSC_v3.122,745,161 - 2,813,837 (+)NCBI
Cytogenetic Map2q11NCBI
ELL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38595,885,098 - 95,961,851 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl595,885,098 - 95,961,871 (-)Ensemblhg38GRCh38
GRCh37595,220,802 - 95,297,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36595,246,558 - 95,323,531 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34595,248,856 - 95,323,531NCBI
Celera591,099,569 - 91,176,577 (-)NCBICelera
Cytogenetic Map5q15NCBI
HuRef590,411,375 - 90,488,473 (-)NCBIHuRef
CHM1_1594,653,611 - 94,730,421 (-)NCBICHM1_1
T2T-CHM13v2.0596,386,338 - 96,463,172 (-)NCBIT2T-CHM13v2.0
Ell2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391375,855,603 - 75,920,480 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1375,854,876 - 75,920,483 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381375,707,484 - 75,772,361 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1375,706,757 - 75,772,364 (+)Ensemblmm10GRCm38
MGSCv371375,844,932 - 75,909,809 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361376,172,805 - 76,238,363 (+)NCBIMGSCv36mm8
Celera1378,027,359 - 78,092,187 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.93NCBI
Ell2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541816,614,543 - 16,687,698 (+)Ensembl
ChiLan1.0NW_00495541816,615,340 - 16,686,632 (+)NCBIChiLan1.0ChiLan1.0
ELL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2419,406,161 - 19,494,138 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1517,571,196 - 17,645,446 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0519,387,443 - 19,464,150 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1519,533,442 - 19,610,079 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl519,533,442 - 19,610,079 (+)EnsemblpanPan2panpan1.1
ELL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1313,673,653 - 13,746,604 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl313,673,785 - 13,746,316 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha315,012,972 - 15,085,860 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0313,553,675 - 13,626,554 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl313,553,644 - 13,624,274 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1313,516,603 - 13,589,440 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0313,513,473 - 13,586,474 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0313,713,306 - 13,786,243 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ell2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213169,213,989 - 169,285,468 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365237,399,421 - 7,473,158 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365237,399,426 - 7,470,895 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2102,518,608 - 102,591,394 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12102,518,605 - 102,591,416 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22106,402,543 - 106,475,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1489,758,483 - 89,835,773 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl489,762,251 - 89,835,433 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604938,404,258 - 38,481,671 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ell2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474314,515,727 - 14,583,805 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ell2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13222,150,379 - 222,219,159 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ell2
165 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:30
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000032974
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat

Markers in Region
RH140637  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.225,190,510 - 5,190,722 (+)MAPPERmRatBN7.2
Rnor_6.022,457,326 - 2,457,537NCBIRnor6.0
Rnor_5.022,450,494 - 2,450,705UniSTSRnor5.0
RGSC_v3.422,726,126 - 2,726,337UniSTSRGSC3.4
Celera21,663,078 - 1,663,289UniSTS
Cytogenetic Map2q11UniSTS
AU048745  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q32UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map13q26UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map1q54UniSTS
Cytogenetic Map1q36UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map13p13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map10q31UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map3p13UniSTS
RH135451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.225,204,172 - 5,204,299 (+)MAPPERmRatBN7.2
mRatBN7.2181,707,140 - 1,707,267 (+)MAPPERmRatBN7.2
Rnor_6.0181,876,354 - 1,876,480NCBIRnor6.0
Rnor_6.022,470,983 - 2,471,109NCBIRnor6.0
Rnor_5.0181,909,115 - 1,909,241UniSTSRnor5.0
Rnor_5.022,464,151 - 2,464,277UniSTSRnor5.0
RGSC_v3.422,739,783 - 2,739,909UniSTSRGSC3.4
RGSC_v3.4182,011,415 - 2,011,541UniSTSRGSC3.4
Celera181,588,827 - 1,588,953UniSTS
Celera21,675,742 - 1,675,868UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000032974   ⟹   ENSRNOP00000035042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,854 - 7,005,810 (+)Ensembl
mRatBN7.2 Ensembl25,189,971 - 5,257,287 (+)Ensembl
Rnor_6.0 Ensembl22,456,735 - 2,524,237 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108554   ⟹   ENSRNOP00000087256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,855 - 6,990,648 (+)Ensembl
mRatBN7.2 Ensembl25,190,036 - 5,258,781 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110538   ⟹   ENSRNOP00000080636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,771 - 7,005,828 (+)Ensembl
mRatBN7.2 Ensembl25,189,971 - 5,257,898 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119227   ⟹   ENSRNOP00000088047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,819 - 6,990,648 (+)Ensembl
mRatBN7.2 Ensembl25,190,577 - 5,258,781 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000122072   ⟹   ENSRNOP00000109297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,922,101 - 6,990,648 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138691   ⟹   ENSRNOP00000102589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,835 - 7,003,682 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142200   ⟹   ENSRNOP00000101351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,823 - 6,989,591 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148337   ⟹   ENSRNOP00000099166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,771 - 7,004,727 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148619   ⟹   ENSRNOP00000103484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,922,447 - 7,005,809 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169024   ⟹   ENSRNOP00000100570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl26,921,771 - 7,016,199 (+)Ensembl
RefSeq Acc Id: NM_001427210   ⟹   NP_001414139
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr826,921,852 - 6,990,652 (+)NCBI
RefSeq Acc Id: XM_008760604   ⟹   XP_008758826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr826,922,058 - 6,990,654 (+)NCBI
mRatBN7.225,190,163 - 5,258,781 (+)NCBI
Rnor_6.022,473,889 - 2,525,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103371   ⟹   XP_038959299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr826,937,474 - 6,990,654 (+)NCBI
mRatBN7.225,206,172 - 5,258,781 (+)NCBI
RefSeq Acc Id: XR_010063598
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr826,910,446 - 6,989,013 (+)NCBI
RefSeq Acc Id: XP_008758826   ⟸   XM_008760604
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A5C9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035042   ⟸   ENSRNOT00000032974
RefSeq Acc Id: XP_038959299   ⟸   XM_039103371
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A5C9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080636   ⟸   ENSRNOT00000110538
Ensembl Acc Id: ENSRNOP00000088047   ⟸   ENSRNOT00000119227
Ensembl Acc Id: ENSRNOP00000087256   ⟸   ENSRNOT00000108554
RefSeq Acc Id: NP_001414139   ⟸   NM_001427210
- UniProtKB: A0A8I6A5G5 (UniProtKB/TrEMBL),   A6I4E9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100570   ⟸   ENSRNOT00000169024
Ensembl Acc Id: ENSRNOP00000109297   ⟸   ENSRNOT00000122072
Ensembl Acc Id: ENSRNOP00000099166   ⟸   ENSRNOT00000148337
Ensembl Acc Id: ENSRNOP00000103484   ⟸   ENSRNOT00000148619
Ensembl Acc Id: ENSRNOP00000101351   ⟸   ENSRNOT00000142200
Ensembl Acc Id: ENSRNOP00000102589   ⟸   ENSRNOT00000138691
Protein Domains
OCEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LSH1-F1-model_v2 AlphaFold F1LSH1 1-640 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691036
Promoter ID:EPDNEW_R1556
Type:initiation region
Name:Ell2_1
Description:elongation factor for RNA polymerase II 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.022,456,790 - 2,456,850EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309296 AgrOrtholog
BioCyc Gene G2FUF-55096 BioCyc
Ensembl Genes ENSRNOG00000027089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032974.8 UniProtKB/TrEMBL
  ENSRNOT00000108554 ENTREZGENE
  ENSRNOT00000108554.2 UniProtKB/TrEMBL
  ENSRNOT00000110538.2 UniProtKB/TrEMBL
  ENSRNOT00000119227.2 UniProtKB/TrEMBL
  ENSRNOT00000122072.1 UniProtKB/TrEMBL
  ENSRNOT00000138691.1 UniProtKB/TrEMBL
  ENSRNOT00000142200.1 UniProtKB/TrEMBL
  ENSRNOT00000148337.1 UniProtKB/TrEMBL
  ENSRNOT00000148619.1 UniProtKB/TrEMBL
  ENSRNOT00000169024.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2670 UniProtKB/TrEMBL
  6.10.140.340 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7308699 IMAGE-MGC_LOAD
InterPro E3_ELL-like UniProtKB/TrEMBL
  ELL/occludin UniProtKB/TrEMBL
  Occludin_RNApol2_elong_fac_ELL UniProtKB/TrEMBL
  RNA_pol_II_elong_fac_ELL UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
MGC_CLONE MGC:125133 IMAGE-MGC_LOAD
NCBI Gene 309918 ENTREZGENE
PANTHER PTHR23288 UniProtKB/TrEMBL
  RNA POLYMERASE II ELONGATION FACTOR ELL2 UniProtKB/TrEMBL
Pfam ELL UniProtKB/TrEMBL
  Occludin_ELL UniProtKB/TrEMBL
PhenoGen Ell2 PhenoGen
PROSITE OCEL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027089 RatGTEx
Superfamily-SCOP occludin/ELL-like UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A8I5ZQ21_RAT UniProtKB/TrEMBL
  A0A8I6A5C9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5G5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L0I9_RAT UniProtKB/TrEMBL
  A0ABK0LCT4_RAT UniProtKB/TrEMBL
  A0ABK0LEU8_RAT UniProtKB/TrEMBL
  A0ABK0LI66_RAT UniProtKB/TrEMBL
  A0ABK0LKZ7_RAT UniProtKB/TrEMBL
  A0ABK0LQM3_RAT UniProtKB/TrEMBL
  A6I4E8_RAT UniProtKB/TrEMBL
  A6I4E9 ENTREZGENE, UniProtKB/TrEMBL
  F1LSH1_RAT UniProtKB/TrEMBL
  Q2NL49_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Ell2  elongation factor for RNA polymerase II 2  Ell2  elongation factor RNA for polymerase II 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-27 Ell2  elongation factor RNA for polymerase II 2  Ell2  elongation factor RNA polymerase II 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 Ell2  elongation factor RNA polymerase II 2  Ell2_predicted  elongation factor RNA polymerase II 2 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Ell2_predicted  elongation factor RNA polymerase II 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED