Tanc2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2) - Rat Genome Database

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Gene: Tanc2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2) Rattus norvegicus
Analyze
Symbol: Tanc2
Name: tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
RGD ID: 1309285
Description: A structural constituent of postsynaptic density. Involved in dense core granule cytoskeletal transport; regulation of dendritic spine development; and regulation of dendritic spine morphogenesis. Located in dendritic spine. Is active in glutamatergic synapse and postsynaptic density, intracellular component. Human ortholog(s) of this gene implicated in intellectual developmental disorder with autistic features and language delay, with or without seizures. Orthologous to human TANC2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC303599; RGD1309285; similar to KIAA1636 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81091,052,860 - 91,373,291 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1091,053,067 - 91,368,570 (+)EnsemblGRCr8
mRatBN7.21090,553,124 - 90,873,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1090,553,002 - 90,868,756 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1095,601,396 - 95,915,458 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01095,064,563 - 95,378,631 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01090,482,967 - 90,797,525 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01093,811,350 - 94,132,418 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1093,811,350 - 94,127,697 (+)Ensemblrn6Rnor6.0
Rnor_5.01093,567,079 - 93,880,565 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41094,992,107 - 95,319,058 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1089,232,884 - 89,546,990 (+)NCBICelera
RGSC_v3.11095,005,414 - 95,332,662 (+)NCBI
Cytogenetic Map10q32.1NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cisplatin  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
Geniposide  (ISO)
leflunomide  (ISO)
metformin  (EXP)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
xylitol  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Regulation of dendritic spines, spatial memory, and embryonic development by the TANC family of PSD-95-interacting proteins. Han S, etal., J Neurosci. 2010 Nov 10;30(45):15102-12. doi: 10.1523/JNEUROSCI.3128-10.2010.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-α/TANC2 Recruits DCVs to Postsynaptic Sites. Stucchi R, etal., Cell Rep. 2018 Jul 17;24(3):685-700. doi: 10.1016/j.celrep.2018.06.071.
Additional References at PubMed
PMID:25763846  


Genomics

Comparative Map Data
Tanc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81091,052,860 - 91,373,291 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1091,053,067 - 91,368,570 (+)EnsemblGRCr8
mRatBN7.21090,553,124 - 90,873,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1090,553,002 - 90,868,756 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1095,601,396 - 95,915,458 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01095,064,563 - 95,378,631 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01090,482,967 - 90,797,525 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01093,811,350 - 94,132,418 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1093,811,350 - 94,127,697 (+)Ensemblrn6Rnor6.0
Rnor_5.01093,567,079 - 93,880,565 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41094,992,107 - 95,319,058 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1089,232,884 - 89,546,990 (+)NCBICelera
RGSC_v3.11095,005,414 - 95,332,662 (+)NCBI
Cytogenetic Map10q32.1NCBI
TANC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381762,966,235 - 63,427,703 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1762,966,235 - 63,427,703 (+)Ensemblhg38GRCh38
GRCh371761,043,596 - 61,505,064 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361758,440,630 - 58,858,799 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1755,475,137 - 55,893,299 (+)NCBICelera
Cytogenetic Map17q23.2-q23.3NCBI
HuRef1756,455,117 - 56,873,425 (+)NCBIHuRef
CHM1_11761,151,133 - 61,569,236 (+)NCBICHM1_1
T2T-CHM13v2.01763,836,303 - 64,297,911 (+)NCBIT2T-CHM13v2.0
Tanc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911105,480,458 - 105,820,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11105,480,812 - 105,820,130 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3811105,589,460 - 105,929,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11105,589,986 - 105,929,304 (+)Ensemblmm10GRCm38
MGSCv3711105,451,300 - 105,790,618 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611105,406,081 - 105,745,394 (+)NCBIMGSCv36mm8
Celera11117,319,535 - 117,661,003 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1168.73NCBI
Tanc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554788,376,487 - 8,757,136 (-)Ensembl
ChiLan1.0NW_0049554788,370,813 - 8,757,132 (-)NCBIChiLan1.0ChiLan1.0
TANC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21979,129,141 - 79,601,009 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11783,946,714 - 84,418,596 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01757,037,330 - 57,509,229 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11762,185,121 - 62,656,041 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1762,239,230 - 62,650,299 (+)EnsemblpanPan2panpan1.1
TANC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1911,133,634 - 11,459,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl911,151,475 - 11,454,022 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha912,112,386 - 12,420,462 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0912,753,835 - 13,122,957 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl912,753,841 - 13,119,057 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1911,699,638 - 12,067,930 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0915,464,054 - 15,832,278 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0915,466,810 - 15,836,349 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tanc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560215,074,440 - 15,491,870 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365413,744,687 - 4,115,007 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365413,702,743 - 4,115,009 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TANC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,453,241 - 15,813,469 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11215,448,584 - 15,813,831 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21215,435,191 - 15,618,010 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TANC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11657,849,592 - 58,254,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1657,855,282 - 58,306,571 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607728,468,449 - 28,937,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tanc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624849452,884 - 940,686 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624849452,848 - 946,511 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tanc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1973,182,253 - 73,507,608 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tanc2
1872 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:73
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000055134
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103550938391417879Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108101207791729860Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)109090424595604677Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108306123692869129Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105046480295464802Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107674313395464802Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108780775896620484Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106724133498502431Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)109112727095604677Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106184349698710773Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)107369533997272278Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1081012077101828297Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)9090424595604677Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)9090424595604677Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)109090424595604677Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107304965694495280Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)109090424595604677Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)104949549294495492Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)109090424595604677Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)102980091091417879Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)108890050196620484Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105530797293608131Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)1061843496100198886Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)108982706891430246Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104994371094943710Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1061843496100198886Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104786912992869129Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108450348796432422Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107674313395604677Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108450348796432422Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat

Markers in Region
D10Rat17  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81091,127,270 - 91,127,454 (+)Marker Load Pipeline
mRatBN7.21090,627,439 - 90,627,625 (+)MAPPERmRatBN7.2
Rnor_6.01093,886,117 - 93,886,300NCBIRnor6.0
Rnor_5.01093,641,751 - 93,641,934UniSTSRnor5.0
RGSC_v3.41095,066,219 - 95,066,632RGDRGSC3.4
RGSC_v3.41095,066,310 - 95,066,493UniSTSRGSC3.4
Celera1089,307,068 - 89,307,251UniSTS
RGSC_v3.11095,080,680 - 95,080,863RGD
RH 3.4 Map10949.1RGD
RH 3.4 Map10949.1UniSTS
RH 2.0 Map101057.9RGD
SHRSP x BN Map1069.01RGD
FHH x ACI Map1075.8199RGD
Cytogenetic Map10q32.1UniSTS
D10Got141  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,627,507 - 90,627,669 (+)MAPPERmRatBN7.2
Rnor_6.01093,886,185 - 93,886,344NCBIRnor6.0
Rnor_5.01093,641,819 - 93,641,978UniSTSRnor5.0
RGSC_v3.41095,066,377 - 95,066,537RGDRGSC3.4
RGSC_v3.41095,066,378 - 95,066,537UniSTSRGSC3.4
Celera1089,307,136 - 89,307,295UniSTS
RGSC_v3.11095,080,748 - 95,080,907RGD
RH 3.4 Map10968.6UniSTS
RH 3.4 Map10968.6RGD
RH 2.0 Map101076.1RGD
Cytogenetic Map10q32.1UniSTS
D4Mit226.1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01093,642,077 - 93,642,181NCBIRnor5.0
Rnor_5.02048,505,646 - 48,505,728NCBIRnor5.0
RGSC_v3.42045,946,477 - 45,946,558UniSTSRGSC3.4
RGSC_v3.41095,066,637 - 95,066,740UniSTSRGSC3.4
Celera2054,503,381 - 54,503,462UniSTS
Celera1089,307,395 - 89,307,498UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map10q32.1UniSTS
RH94768  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,930,321 - 90,930,437 (+)MAPPERmRatBN7.2
Rnor_6.01094,084,710 - 94,084,825NCBIRnor6.0
Rnor_5.01093,840,108 - 93,840,223UniSTSRnor5.0
RGSC_v3.41095,381,340 - 95,381,455UniSTSRGSC3.4
Celera1089,608,551 - 89,608,666UniSTS
Cytogenetic Map10q32.1UniSTS
RH143651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,572,563 - 90,572,740 (+)MAPPERmRatBN7.2
Rnor_6.01093,830,681 - 93,830,857NCBIRnor6.0
Rnor_5.01093,586,315 - 93,586,491UniSTSRnor5.0
RGSC_v3.41095,011,438 - 95,011,614UniSTSRGSC3.4
Celera1089,252,215 - 89,252,391UniSTS
RH 3.4 Map10962.6UniSTS
Cytogenetic Map10q32.1UniSTS
BF399386  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,763,788 - 90,763,939 (+)MAPPERmRatBN7.2
Rnor_6.01094,021,100 - 94,021,250NCBIRnor6.0
Rnor_5.01093,776,755 - 93,776,905UniSTSRnor5.0
RGSC_v3.41095,213,260 - 95,213,410UniSTSRGSC3.4
Celera1089,443,076 - 89,443,226UniSTS
RH 3.4 Map10975.4UniSTS
Cytogenetic Map10q32.1UniSTS
RH134911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,868,507 - 90,868,726 (+)MAPPERmRatBN7.2
Rnor_6.01094,127,449 - 94,127,667NCBIRnor6.0
Rnor_5.01093,880,317 - 93,880,535UniSTSRnor5.0
RGSC_v3.41095,318,810 - 95,319,028UniSTSRGSC3.4
Celera1089,546,742 - 89,546,960UniSTS
RH 3.4 Map10976.1UniSTS
Cytogenetic Map10q32.1UniSTS
RH139051  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,738,199 - 90,738,376 (+)MAPPERmRatBN7.2
Rnor_6.01093,996,698 - 93,996,874NCBIRnor6.0
Rnor_5.01093,752,353 - 93,752,529UniSTSRnor5.0
RGSC_v3.41095,182,202 - 95,182,378UniSTSRGSC3.4
Celera1089,417,427 - 89,417,603UniSTS
RH 3.4 Map10974.6UniSTS
Cytogenetic Map10q32.1UniSTS
AA926148  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,930,958 - 90,931,170 (+)MAPPERmRatBN7.2
Rnor_6.01094,085,347 - 94,085,558NCBIRnor6.0
Rnor_5.01093,840,745 - 93,840,956UniSTSRnor5.0
RGSC_v3.41095,381,977 - 95,382,188UniSTSRGSC3.4
Celera1089,609,188 - 89,609,399UniSTS
RH 3.4 Map10975.1UniSTS
Cytogenetic Map10q32.1UniSTS
BE118743  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,809,090 - 90,809,241 (+)MAPPERmRatBN7.2
Rnor_6.01094,066,734 - 94,066,884NCBIRnor6.0
Rnor_5.01093,821,827 - 93,821,977UniSTSRnor5.0
RGSC_v3.41095,259,701 - 95,259,851UniSTSRGSC3.4
Celera1089,488,335 - 89,488,485UniSTS
RH 3.4 Map10976.1UniSTS
Cytogenetic Map10q32.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077280   ⟹   ENSRNOP00000069281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1091,053,067 - 91,368,570 (+)Ensembl
mRatBN7.2 Ensembl1090,553,232 - 90,868,756 (+)Ensembl
Rnor_6.0 Ensembl1093,811,350 - 94,127,697 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081937   ⟹   ENSRNOP00000075014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1091,053,067 - 91,368,570 (+)Ensembl
mRatBN7.2 Ensembl1090,553,002 - 90,868,756 (+)Ensembl
Rnor_6.0 Ensembl1093,811,505 - 94,127,129 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000146875   ⟹   ENSRNOP00000111586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1091,053,067 - 91,368,570 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159716   ⟹   ENSRNOP00000100647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1091,094,599 - 91,368,570 (+)Ensembl
RefSeq Acc Id: NM_001191653   ⟹   NP_001178582
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,067 - 91,368,570 (+)NCBI
mRatBN7.21090,553,232 - 90,868,756 (+)NCBI
Rnor_6.01093,811,350 - 94,127,697 (+)NCBI
Rnor_5.01093,567,079 - 93,880,565 (+)NCBI
Celera1089,232,884 - 89,546,990 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768351   ⟹   XP_008766573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
Rnor_6.01093,811,448 - 94,132,418 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768353   ⟹   XP_008766575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
Rnor_6.01093,811,448 - 94,127,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086147   ⟹   XP_038942075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086149   ⟹   XP_038942077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086150   ⟹   XP_038942078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086151   ⟹   XP_038942079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086152   ⟹   XP_038942080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,103,188 - 91,373,291 (+)NCBI
mRatBN7.21090,603,355 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086153   ⟹   XP_038942081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,052,860 - 91,373,291 (+)NCBI
mRatBN7.21090,583,248 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086154   ⟹   XP_038942082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,192 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086155   ⟹   XP_038942083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,052,860 - 91,373,291 (+)NCBI
mRatBN7.21090,583,248 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086156   ⟹   XP_038942084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,130,985 - 91,373,291 (+)NCBI
mRatBN7.21090,583,248 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086157   ⟹   XP_038942085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
mRatBN7.21090,553,124 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086158   ⟹   XP_038942086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,163,077 - 91,373,291 (+)NCBI
mRatBN7.21090,662,857 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086159   ⟹   XP_038942087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,130,983 - 91,373,291 (+)NCBI
mRatBN7.21090,583,248 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_039086160   ⟹   XP_038942088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,163,077 - 91,373,291 (+)NCBI
mRatBN7.21090,662,857 - 90,873,477 (+)NCBI
RefSeq Acc Id: XM_063269198   ⟹   XP_063125268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81091,053,185 - 91,373,291 (+)NCBI
RefSeq Acc Id: NP_001178582   ⟸   NM_001191653
- UniProtKB: F1LTE0 (UniProtKB/TrEMBL),   A6HJY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766573   ⟸   XM_008768351
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008766575   ⟸   XM_008768353
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069281   ⟸   ENSRNOT00000077280
Ensembl Acc Id: ENSRNOP00000075014   ⟸   ENSRNOT00000081937
RefSeq Acc Id: XP_038942075   ⟸   XM_039086147
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942077   ⟸   XM_039086149
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942078   ⟸   XM_039086150
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942079   ⟸   XM_039086151
- Peptide Label: isoform X6
- UniProtKB: A6HJY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942085   ⟸   XM_039086157
- Peptide Label: isoform X8
- UniProtKB: A6HJY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942082   ⟸   XM_039086154
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942084   ⟸   XM_039086156
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942083   ⟸   XM_039086155
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942087   ⟸   XM_039086159
- Peptide Label: isoform X10
- UniProtKB: A6HJY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942081   ⟸   XM_039086153
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942080   ⟸   XM_039086152
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K9J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942086   ⟸   XM_039086158
- Peptide Label: isoform X10
- UniProtKB: A6HJY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942088   ⟸   XM_039086160
- Peptide Label: isoform X10
- UniProtKB: A6HJY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125268   ⟸   XM_063269198
- Peptide Label: isoform X9
- UniProtKB: A6HJY7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100647   ⟸   ENSRNOT00000159716
Ensembl Acc Id: ENSRNOP00000111586   ⟸   ENSRNOT00000146875

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LTE0-F1-model_v2 AlphaFold F1LTE0 1-1992 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309285 AgrOrtholog
BioCyc Gene G2FUF-22982 BioCyc
Ensembl Genes ENSRNOG00000052840 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000077280 ENTREZGENE
  ENSRNOT00000081937 ENTREZGENE
  ENSRNOT00000146875 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
  1.25.40.20 UniProtKB/Swiss-Prot
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
  Dendritic_Spine_Reg/Scaffold UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  TPR_repeat UniProtKB/Swiss-Prot
KEGG Report rno:303599 UniProtKB/Swiss-Prot
NCBI Gene 303599 ENTREZGENE
PANTHER PROTEIN TANC2 UniProtKB/Swiss-Prot
  ROLLING PEBBLES, ISOFORM B UniProtKB/Swiss-Prot
Pfam Ank_2 UniProtKB/Swiss-Prot
  TPR_8 UniProtKB/Swiss-Prot
PhenoGen Tanc2 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot
  TPR UniProtKB/Swiss-Prot
  TPR_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000052840 RatGTEx
SMART ANK UniProtKB/Swiss-Prot
  TPR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot
  SSF48452 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
UniProt A0A0G2K9J0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R2A4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KZ95_RAT UniProtKB/TrEMBL
  A0ABK0LYM3_RAT UniProtKB/TrEMBL
  A6HJY7 ENTREZGENE, UniProtKB/TrEMBL
  F1LTE0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Tanc2  tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2  RGD1309285  similar to KIAA1636 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309285  similar to KIAA1636 protein   RGD1309285_predicted  similar to KIAA1636 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309285_predicted  similar to KIAA1636 protein (predicted)  LOC303599_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303599_predicted  similar to KIAA1636 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL