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Gene: Slc30a6 (solute carrier family 30 member 6) Rattus norvegicus

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Symbol:

Slc30a6

Name:

solute carrier family 30 member 6

RGD ID:

1309250

Description:

Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in regulation of zinc ion transport and zinc ion import into Golgi lumen. Predicted to act upstream of or within Golgi to endosome transport. Located in Golgi apparatus. Orthologous to human SLC30A6 (solute carrier family 30 member 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC298786; solute carrier family 30 (zinc transporter), member 6; zinc transporter 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	26,772,804 - 26,802,656 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	26,772,804 - 26,802,656 (-)	Ensembl				GRCr8
mRatBN7.2	6	21,020,931 - 21,050,785 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	21,020,931 - 21,050,785 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	21,351,774 - 21,381,790 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	21,667,616 - 21,697,632 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	21,148,067 - 21,178,084 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	22,197,003 - 22,226,364 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	22,197,040 - 22,226,421 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	32,084,482 - 32,113,757 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	20,956,126 - 20,985,614 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	20,580,463 - 20,609,620 (-)	NCBI		Celera
RGSC_v3.1	6	20,959,289 - 20,988,567 (-)	NCBI
Cytogenetic Map	6	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acrolein (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

folic acid (ISO)

gentamycin (EXP)

iron dichloride (ISO)

ketamine (EXP)

lead diacetate (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

nickel atom (ISO)

ochratoxin A (ISO)

ozone (ISO)

paracetamol (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

testosterone (ISO)

thiram (ISO)

titanium dioxide (ISO)

Tributyltin oxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi to endosome transport (ISO)

monoatomic cation transport (IEA)

monoatomic ion transport (IEA)

regulation of zinc ion transport (IEA,ISO)

transmembrane transport (IEA)

zinc ion import into Golgi lumen (IEA,ISO)

zinc ion transport (IBA,IEA,ISO)

Cellular Component

apical plasma membrane (ISO)

cytoplasm (ISO)

cytosol (IEA)

Golgi apparatus (IBA,IDA,IEA,ISO)

membrane (IEA)

trans-Golgi network membrane (IEA,ISO)

transmembrane transporter complex (IEA,ISO)

Molecular Function

monoatomic cation transmembrane transporter activity (IEA)

protein binding (ISO)

zinc ion transmembrane transporter activity (IEA,ISO)

zinc:proton antiporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Functional characterization of a novel mammalian zinc transporter, ZnT6.	Huang L, etal., J Biol Chem. 2002 Jul 19;277(29):26389-95. doi: 10.1074/jbc.M200462200. Epub 2002 May 7.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17349999	PMID:18614015

Genomics

Comparative Map Data

Slc30a6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	26,772,804 - 26,802,656 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	26,772,804 - 26,802,656 (-)	Ensembl				GRCr8
mRatBN7.2	6	21,020,931 - 21,050,785 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	21,020,931 - 21,050,785 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	21,351,774 - 21,381,790 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	21,667,616 - 21,697,632 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	21,148,067 - 21,178,084 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	22,197,003 - 22,226,364 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	22,197,040 - 22,226,421 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	32,084,482 - 32,113,757 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	20,956,126 - 20,985,614 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	20,580,463 - 20,609,620 (-)	NCBI		Celera
RGSC_v3.1	6	20,959,289 - 20,988,567 (-)	NCBI
Cytogenetic Map	6	q13	NCBI

SLC30A6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	32,165,864 - 32,224,379 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	32,165,841 - 32,224,379 (+)	Ensembl			hg38	GRCh38
GRCh37	2	32,390,933 - 32,449,448 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	32,244,437 - 32,300,313 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	32,302,583 - 32,358,460	NCBI
Celera	2	32,235,752 - 32,294,001 (+)	NCBI		Celera
Cytogenetic Map	2	p22.3	NCBI
HuRef	2	32,130,237 - 32,188,370 (+)	NCBI		HuRef
CHM1_1	2	32,320,825 - 32,379,074 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	32,214,423 - 32,272,885 (+)	NCBI		T2T-CHM13v2.0

Slc30a6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	74,702,573 - 74,731,225 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	74,702,603 - 74,731,216 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	74,395,578 - 74,424,229 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	74,395,608 - 74,424,221 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	74,794,972 - 74,823,569 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	74,300,614 - 74,329,211 (+)	NCBI		MGSCv36	mm8
Celera	17	78,697,728 - 78,727,974 (+)	NCBI		Celera
Cytogenetic Map	17	E2	NCBI
cM Map	17	45.64	NCBI

Slc30a6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	528,234 - 567,382 (+)	Ensembl
ChiLan1.0	NW_004955441	528,256 - 567,382 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC30A6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	94,269,436 - 94,327,635 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	94,273,411 - 94,331,600 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	32,183,308 - 32,238,261 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	32,896,053 - 32,953,830 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	32,896,053 - 32,953,830 (+)	Ensembl			panPan2	panpan1.1

SLC30A6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	25,450,766 - 25,493,118 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	25,450,846 - 25,490,952 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	25,243,151 - 25,285,568 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	26,013,711 - 26,056,259 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	26,013,795 - 26,056,248 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	25,313,653 - 25,356,444 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	25,385,039 - 25,427,470 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	25,484,677 - 25,527,107 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc30a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	69,559,712 - 69,604,405 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	1,232,546 - 1,279,855 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	1,235,162 - 1,279,812 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC30A6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	107,387,860 - 107,426,337 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	107,387,875 - 107,426,330 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	114,533,649 - 114,543,704 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC30A6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	75,274,190 - 75,340,818 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	75,273,724 - 75,340,436 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	36,742,357 - 36,800,680 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc30a6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	13,786,788 - 13,832,948 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624738	13,786,757 - 13,836,123 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc30a6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	18,826,849 - 18,845,569 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc30a6
208 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	363
Count of miRNA genes:	206
Interacting mature miRNAs:	253
Transcripts:	ENSRNOT00000007919, ENSRNOT00000066118
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1975879	46975879	Rat
8693699	Alc37	Alcohol consumption QTL 37	2.6	0.224	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	13717169	27053860	Rat
8693645	Alc31	Alcohol consumption QTL 31	3.7	0.038	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	23284664	29732046	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
8552910	Pigfal5	Plasma insulin-like growth factor 1 level QTL 5	4.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	22653889	67653889	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	22288257	27729050	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	3239989	48239989	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1975879	46975879	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1975879	46975879	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	44788383	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1975879	46975879	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1975879	46975879	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	86868070	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	3239989	48239989	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	3239989	48239989	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	1	40163351	Rat
70199	Coreg1	Compensatory renal growth QTL 1	11.8		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	6	14599473	63457687	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	16089372	61967788	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	3239989	48239989	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	22288257	32981219	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	22288257	67288257	Rat
8693690	Alc35	Alcohol consumption QTL 35	2.2	0.606	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	13717169	27053860	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC139392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007919 ⟹ ENSRNOP00000007919

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	26,772,804 - 26,802,656 (-)	Ensembl
mRatBN7.2 Ensembl	6	21,020,931 - 21,050,785 (-)	Ensembl
Rnor_6.0 Ensembl	6	22,197,040 - 22,226,421 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097369 ⟹ ENSRNOP00000090521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	21,020,931 - 21,044,063 (-)	Ensembl

RefSeq Acc Id:

NM_001277279 ⟹ NP_001264208

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	26,772,804 - 26,802,656 (-)	NCBI
mRatBN7.2	6	21,020,931 - 21,050,785 (-)	NCBI
Rnor_6.0	6	22,197,003 - 22,226,364 (-)	NCBI
Rnor_5.0	6	32,084,482 - 32,113,757 (-)	NCBI
Celera	6	20,580,463 - 20,609,620 (-)	NCBI

Sequence:

show sequence

GAATTCTCAGAGCGTCTTCCGGCGGGAGCTGTACGGCTCCTTACCATGGGGACGATTCATCTCT
TTCGAAAGCCACAGAGATCCTTTTTTGGAAAGTTACTACAGGAATTTAGACTCGTAGCAGCTGA
CCGAAGGTCCTGGAAGATACTTCTTTTTGGTGCCATCAACGTGCTGTGCACTGGCTTCCTGCTC
ATGTGGTGCAGCTCTACTAACAGCATCGCTTTAACTGCTTATACTTACCTCACCATTTTTGATC
TCTTTAGTTTAATTACATGTTTAATAAGCTACTGGGTGATGATGAGGAGACCTAGCGCTGCCTA
TTCGTTTGGGTTTGAAAGACTAGAAGTCCTGGCTGTATTTGCTTCTACTGTCTTGGCACAATTG
GGAGCCCTCTTTATACTAAAAGAAAGTGCAGAACGCTTTTTGGAGCAGCCTGAGATACACACGG
GAAGATTATTAGTTGGTACTTTTGTGGCCCTTTCTTTCAACCTGTTCACGATGCTTTCTATTCG
GAATAAGCCTTTTGCTTACGTCTCTGAAGCTGCAAGTACGAGCTGGCTTCAAGAGCATGTGGCA
GACCTTAGTCGCAGCTTGTGCGGCATTATCCCAGGACTCAGCAGTATCTTCTTGCCCCGCATGA
ACCCGTTTGTTCTGATCGATCTTGCTGGGGCGCTTGCTCTGTGTATAACATACATGCTGATTGA
AATTAATAATTACTTTGCTGTAGACACTGCGTCAGCGATCGCCATTGCCCTGATGACATTTGGC
ACCATGTATCCCATGAGTGTGTACAGTGGGAAGGTGCTTCTCCAGACAACACCACCTCATGTTA
TTGGTCAGTTGGATAAACTGATTAGAGAGGTGTCTACCTTGGATGGGGTGTTAGAAGTCCGAAA
CGAACACTTTTGGACCCTTGGATTTGGCTCCTTGGCTGGATCAGTGCATGTAAGAATTCGACGA
GATGCAAACGAACAAATGGTCCTTGCTCATGTGACCAACAGGCTGTGCACGCTGGTGTCCACTC
TGACTGTTCAGATCTTCAAGGATGACTGGATTAGGCCTGCCCTGTCATCTGGGCCTGTTGCACC
CAATGTGCTAAACTTCTCAGACCACCACATAATCCCAATGCCTCTTTTAAAGAACAATGATGAG
AGGACCCCTGTCACATCCACCCCAGCCAAGCCCAGCAGCCCACCTCCGGAGTTTGCATTTAATA
CGCCTGGGAAAAATGTGAGCCCAGTCATTCTTCTGAACACACAGACAAGGCCATATGGTTTGGG
TCTTAATCGTGGACACACACCATACAGCAGTATGTTCAGCCAAGGACTTGCGTTTCCAGGAGTT
GGAGCAGGTCAGGGATTGAGGCCCACCTTCCCACATATACCAAGCAGGTACGGAATCAACAGGA
TGGGACAGCCAAGACCCTGATGGACTCTTAACGTACTGTTATGGGAGTGTCGACTCCTTGCCTT
CCAGTGTATTTAGTCATCCAGTTGCATTGACTGTTCAACCACTTATGTGTCAGATTATTCCAAG
CTTGTTCATATTTCATAAAACCTATAAACTATATTTTTGTAAAACATTCTTGTGGCAGTGAGGT
CTTTGAAACGTCATGGGTGTGTGTCAGATAGGTCTCCTTCAAGAAGTCTGAATGCCAGCTGCTT
TGTAACCGCCAACGCTGTGACACTCTGGCCGTGCGGTGGGTAGATCTGTATCTTACTACAAACT
CATAATTCCTTCAGTACAATTTATAAACATGCTTCATGTATGGTGCCCATCTAAGGAAATGAAA
ACATTAGTGTCTATTTGAAAAGTAAAATCTCTTTTATAGCTTTTTTAAGCCTAATTACTGCATT
TTTTTTGAGGTCCTCCCGAATCATTTGTTAAATAAAAAGTAAAAGTTTCTATTGGAA

hide sequence

RefSeq Acc Id:

XM_039111896 ⟹ XP_038967824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	26,773,137 - 26,802,533 (-)	NCBI
mRatBN7.2	6	21,020,939 - 21,050,689 (-)	NCBI

RefSeq Acc Id:

XM_039111898 ⟹ XP_038967826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	26,773,137 - 26,785,353 (-)	NCBI
mRatBN7.2	6	21,021,275 - 21,033,480 (-)	NCBI

RefSeq Acc Id:

XM_063261613 ⟹ XP_063117683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	26,773,137 - 26,795,763 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001264208	(Get FASTA)	NCBI Sequence Viewer
	XP_038967824	(Get FASTA)	NCBI Sequence Viewer
	XP_038967826	(Get FASTA)	NCBI Sequence Viewer
	XP_063117683	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67086	(Get FASTA)	NCBI Sequence Viewer
	EDM02839	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007919
	ENSRNOP00000007919.8

RefSeq Acc Id:

NP_001264208 ⟸ NM_001277279

- UniProtKB:

B2RZA8 (UniProtKB/TrEMBL), F7FK99 (UniProtKB/TrEMBL), A0A8J8YBF1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGTIHLFRKPQRSFFGKLLQEFRLVAADRRSWKILLFGAINVLCTGFLLMWCSSTNSIALTAYT
YLTIFDLFSLITCLISYWVMMRRPSAAYSFGFERLEVLAVFASTVLAQLGALFILKESAERFLE
QPEIHTGRLLVGTFVALSFNLFTMLSIRNKPFAYVSEAASTSWLQEHVADLSRSLCGIIPGLSS
IFLPRMNPFVLIDLAGALALCITYMLIEINNYFAVDTASAIAIALMTFGTMYPMSVYSGKVLLQ
TTPPHVIGQLDKLIREVSTLDGVLEVRNEHFWTLGFGSLAGSVHVRIRRDANEQMVLAHVTNRL
CTLVSTLTVQIFKDDWIRPALSSGPVAPNVLNFSDHHIIPMPLLKNNDERTPVTSTPAKPSSPP
PEFAFNTPGKNVSPVILLNTQTRPYGLGLNRGHTPYSSMFSQGLAFPGVGAGQGLRPTFPHIPS
RYGINRMGQPRP

hide sequence

Ensembl Acc Id:

ENSRNOP00000007919 ⟸ ENSRNOT00000007919

RefSeq Acc Id:	XP_038967824 ⟸ XM_039111896
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967826 ⟸ XM_039111898
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000090521 ⟸ ENSRNOT00000097369

RefSeq Acc Id:	XP_063117683 ⟸ XM_063261613
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ABZ0 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RZA8-F1-model_v2	AlphaFold	B2RZA8	1-460	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694412

Promoter ID:

EPDNEW_R4937

Type:

multiple initiation site

Name:

Slc30a6_1

Description:

solute carrier family 30 member 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	22,226,356 - 22,226,416	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309250	AgrOrtholog
BioCyc Gene	G2FUF-38447	BioCyc
Ensembl Genes	ENSRNOG00000005856	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007919	ENTREZGENE
	ENSRNOT00000007919.9	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1510.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5621310	IMAGE-MGC_LOAD
InterPro	Cation_efflux	UniProtKB/TrEMBL
	Cation_efflux_TMD	UniProtKB/TrEMBL
	CDF_SLC30A	UniProtKB/TrEMBL
KEGG Report	rno:298786	UniProtKB/TrEMBL
MGC_CLONE	MGC:189486	IMAGE-MGC_LOAD
NCBI Gene	298786	ENTREZGENE
PANTHER	ZINC TRANSPORTER 6	UniProtKB/TrEMBL
	ZINC TRANSPORTER 6	UniProtKB/TrEMBL
Pfam	Cation_efflux	UniProtKB/TrEMBL
PhenoGen	Slc30a6	PhenoGen
RatGTEx	ENSRNOG00000005856	RatGTEx
Superfamily-SCOP	SSF161111	UniProtKB/TrEMBL
UniProt	A0A8I6ABZ0	ENTREZGENE
	A0A8J8YBF1	ENTREZGENE, UniProtKB/TrEMBL
	B2RZA8	ENTREZGENE, UniProtKB/TrEMBL
	F7FK99	ENTREZGENE
UniProt Secondary	F7FK99	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc30a6	solute carrier family 30 member 6	Slc30a6	solute carrier family 30 (zinc transporter), member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc30a6	solute carrier family 30 (zinc transporter), member 6	Slc30a6_predicted	solute carrier family 30 (zinc transporter), member 6 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc30a6_predicted	solute carrier family 30 (zinc transporter), member 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD