Slc30a6 (solute carrier family 30 member 6) - Rat Genome Database

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Gene: Slc30a6 (solute carrier family 30 member 6) Chinchilla lanigera
Analyze
Symbol: Slc30a6
Name: solute carrier family 30 member 6
RGD ID: 8717592
Description: ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN Golgi to endosome transport (ortholog); regulation of zinc ion transport (ortholog); zinc ion import into Golgi lumen (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Autoinflammation with Infantile Enterocolitis (ortholog); familial cold autoinflammatory syndrome 4 (ortholog); FOUND IN Golgi apparatus (ortholog); trans-Golgi network membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 30 (zinc transporter), member 6; zinc transporter 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955441528,234 - 567,382 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955441528,256 - 567,382 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slc30a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955441528,234 - 567,382 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955441528,256 - 567,382 (+)NCBIChiLan1.0ChiLan1.0
SLC30A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38232,165,864 - 32,224,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl232,165,841 - 32,224,379 (+)EnsemblGRCh38hg38GRCh38
GRCh37232,390,933 - 32,449,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36232,244,437 - 32,300,313 (+)NCBINCBI36Build 36hg18NCBI36
Build 34232,302,583 - 32,358,460NCBI
Celera232,235,752 - 32,294,001 (+)NCBICelera
Cytogenetic Map2p22.3NCBI
HuRef232,130,237 - 32,188,370 (+)NCBIHuRef
CHM1_1232,320,825 - 32,379,074 (+)NCBICHM1_1
T2T-CHM13v2.0232,214,423 - 32,272,885 (+)NCBIT2T-CHM13v2.0
Slc30a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391774,702,573 - 74,731,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1774,702,603 - 74,731,216 (+)EnsemblGRCm39 Ensembl
GRCm381774,395,578 - 74,424,229 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1774,395,608 - 74,424,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv371774,794,972 - 74,823,569 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361774,300,614 - 74,329,211 (+)NCBIMGSCv36mm8
Celera1778,697,728 - 78,727,974 (+)NCBICelera
Cytogenetic Map17E2NCBI
cM Map1745.64NCBI
Slc30a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8626,772,804 - 26,802,656 (-)NCBIGRCr8
mRatBN7.2621,020,931 - 21,050,785 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl621,020,931 - 21,050,785 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,351,774 - 21,381,790 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0621,667,616 - 21,697,632 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0621,148,067 - 21,178,084 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0622,197,003 - 22,226,364 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl622,197,040 - 22,226,421 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0632,084,482 - 32,113,757 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4620,956,126 - 20,985,614 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1620,959,289 - 20,988,567 (-)NCBI
Celera620,580,463 - 20,609,620 (-)NCBICelera
Cytogenetic Map6q13NCBI
SLC30A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21294,269,436 - 94,327,635 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A94,273,411 - 94,331,600 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A32,183,308 - 32,238,261 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A32,896,053 - 32,953,830 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A32,896,053 - 32,953,830 (+)Ensemblpanpan1.1panPan2
SLC30A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11725,450,766 - 25,493,118 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1725,450,846 - 25,490,952 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1725,243,151 - 25,285,568 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01726,013,711 - 26,056,259 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1726,013,795 - 26,056,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11725,313,653 - 25,356,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01725,385,039 - 25,427,470 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01725,484,677 - 25,527,107 (+)NCBIUU_Cfam_GSD_1.0
Slc30a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629269,559,712 - 69,604,405 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364931,232,546 - 1,279,855 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364931,235,162 - 1,279,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3107,387,860 - 107,426,337 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13107,387,875 - 107,426,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23114,533,649 - 114,543,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC30A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11475,274,190 - 75,340,818 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1475,273,724 - 75,340,436 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604536,742,357 - 36,800,680 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473813,786,788 - 13,832,948 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473813,786,757 - 13,836,123 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007872   ⟹   ENSCLAP00000007752
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955441528,234 - 567,382 (+)Ensembl
RefSeq Acc Id: XM_005390837   ⟹   XP_005390894
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955441528,256 - 567,382 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517595   ⟹   XP_013373049
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955441528,256 - 567,382 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390894 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373049 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007752
  ENSCLAP00000007752.1
Reference Protein Sequences
RefSeq Acc Id: XP_005390894   ⟸   XM_005390837
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373049   ⟸   XM_013517595
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YLM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007752   ⟸   ENSCLAT00000007872


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005442 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007872 ENTREZGENE
  ENSCLAT00000007872.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1510.10 UniProtKB/TrEMBL
InterPro Cation_efflux UniProtKB/TrEMBL
  Cation_efflux_TMD_sf UniProtKB/TrEMBL
NCBI Gene Slc30a6 ENTREZGENE
PANTHER ZINC TRANSPORTER 6 UniProtKB/TrEMBL
  ZINC TRANSPORTER 6 UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/TrEMBL
Superfamily-SCOP SSF161111 UniProtKB/TrEMBL
UniProt A0A8C2YLM8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc30a6  solute carrier family 30 member 6    solute carrier family 30 (zinc transporter), member 6  Symbol and/or name change 5135510 APPROVED