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Gene: Ccnt2 (cyclin T2) Rattus norvegicus

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Symbol:

Ccnt2

Name:

cyclin T2

RGD ID:

1309205

Description:

Predicted to enable several functions, including 7SK snRNA binding activity; cyclin-dependent protein serine/threonine kinase activator activity; and enzyme binding activity. Predicted to be involved in several processes, including early viral transcription; late viral transcription; and positive regulation of transcription elongation by RNA polymerase II. Predicted to be located in perinuclear region of cytoplasm. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT2 (cyclin T2); PARTICIPATES IN RNA polymerase II transcription elongation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cyclin-T2; LOC304758

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNT2 (cyclin T2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ccnt2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccnt2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNT2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCNT2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccnt2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNT2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNT2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccnt2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccnt2 (cyclin T2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CCNT2 (cyclin T2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccnt2 (cyclin T2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccnt2a (cyclin T2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	ccnt2b (cyclin T2b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	ccnt2b (cyclin T2b)	Alliance	DIOPT (PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CTK2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CycT	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CycT	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cit-1.2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	cit-1.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	cit-1.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccnt2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccnt2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	41,804,007 - 41,845,641 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	41,804,046 - 41,844,488 (+)	Ensembl				GRCr8
mRatBN7.2	13	39,251,573 - 39,293,172 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	39,251,573 - 39,292,019 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	41,837,188 - 41,877,612 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	43,125,279 - 43,165,709 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	40,388,273 - 40,428,718 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	44,475,959 - 44,516,892 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	44,475,970 - 44,515,739 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	49,560,733 - 49,601,670 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	40,498,884 - 40,540,130 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	39,627,795 - 39,667,593 (+)	NCBI		Celera
RGSC_v3.1	13	40,516,379 - 40,554,138 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

primary ovarian insufficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

Aroclor 1254 (ISO)

benzene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

caffeine (ISO)

chromium(6+) (ISO)

cobalt dichloride (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diazinon (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dieldrin (EXP)

divanadium pentaoxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

methimazole (EXP)

methylmercury chloride (ISO)

miconazole (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

resveratrol (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

testosterone (EXP)

thimerosal (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tunicamycin (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell division (IEA)

early viral transcription (IEA,ISO)

late viral transcription (IEA,ISO)

positive regulation of DNA-templated transcription, elongation (IBA)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

positive regulation of transcription elongation by RNA polymerase II (ISO)

regulation of muscle cell differentiation (ISO)

regulation of transcription by RNA polymerase II (IEA)

skeletal muscle tissue development (IEA,ISO)

Cellular Component

cyclin/CDK positive transcription elongation factor complex (IBA,IEA,ISO)

nucleus (IBA,IEA,ISO)

perinuclear region of cytoplasm (IEA,ISO)

Molecular Function

7SK snRNA binding (IEA,ISO)

chromatin binding (IEA,ISO)

cyclin-dependent protein serine/threonine kinase activator activity (IBA)

cyclin-dependent protein serine/threonine kinase regulator activity (IEA)

protein binding (ISO)

protein kinase binding (ISO)

RNA polymerase binding (IEA,ISO)

transcription coactivator binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Control of transcriptional elongation.	Kwak H and Lis JT, Annu Rev Genet. 2013;47:483-508. doi: 10.1146/annurev-genet-110711-155440. Epub 2013 Sep 11.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:9499409	PMID:11713533	PMID:12037672	PMID:15563843	PMID:16109376	PMID:16245309	PMID:16331689	PMID:18064521	PMID:21509660	PMID:23060074	PMID:33600051

Genomics

Comparative Map Data

Ccnt2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	41,804,007 - 41,845,641 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	41,804,046 - 41,844,488 (+)	Ensembl				GRCr8
mRatBN7.2	13	39,251,573 - 39,293,172 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	39,251,573 - 39,292,019 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	41,837,188 - 41,877,612 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	43,125,279 - 43,165,709 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	40,388,273 - 40,428,718 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	44,475,959 - 44,516,892 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	44,475,970 - 44,515,739 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	49,560,733 - 49,601,670 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	40,498,884 - 40,540,130 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	39,627,795 - 39,667,593 (+)	NCBI		Celera
RGSC_v3.1	13	40,516,379 - 40,554,138 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

CCNT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	134,918,822 - 134,959,342 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	134,918,235 - 134,959,342 (+)	Ensembl			hg38	GRCh38
GRCh37	2	135,676,392 - 135,716,912 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	135,392,863 - 135,431,057 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	135,510,124 - 135,548,316	NCBI
Celera	2	129,389,316 - 129,427,507 (+)	NCBI		Celera
Cytogenetic Map	2	q21.3	NCBI
HuRef	2	127,668,086 - 127,708,608 (+)	NCBI		HuRef
CHM1_1	2	135,681,212 - 135,721,765 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	135,359,158 - 135,399,741 (+)	NCBI		T2T-CHM13v2.0

Ccnt2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	127,701,901 - 127,732,574 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	127,701,901 - 127,735,798 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	127,774,164 - 127,804,837 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	127,774,164 - 127,808,061 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	129,670,741 - 129,701,414 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	129,601,710 - 129,632,383 (+)	NCBI		MGSCv36	mm8
Celera	1	130,415,607 - 130,446,300 (+)	NCBI		Celera
Cytogenetic Map	1	E3	NCBI
cM Map	1	55.8	NCBI

Ccnt2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	2,424,978 - 2,470,811 (+)	Ensembl
ChiLan1.0	NW_004955440	2,424,976 - 2,468,388 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCNT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	39,972,719 - 40,010,898 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	39,987,689 - 40,025,866 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	24,903,389 - 24,943,122 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	138,994,866 - 139,035,301 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	138,994,868 - 139,035,301 (+)	Ensembl			panPan2	panpan1.1

CCNT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	37,743,442 - 37,787,875 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	37,743,235 - 37,783,220 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	37,983,447 - 38,027,889 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	39,188,742 - 39,233,204 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	39,188,029 - 39,231,246 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	37,831,213 - 37,875,647 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	37,992,184 - 38,036,607 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	39,227,340 - 39,271,785 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	100,780,261 - 100,818,026 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	40,803,819 - 40,837,433 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	40,799,428 - 40,837,462 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	16,974,038 - 17,021,298 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	16,974,364 - 17,021,293 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	19,426,238 - 19,473,794 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	19,145,163 - 19,183,777 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	19,145,161 - 19,180,917 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666061	3,318,380 - 3,358,919 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccnt2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624732	34,307,124 - 34,357,354 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccnt2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	7,904,593 - 7,938,369 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccnt2
194 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	380
Count of miRNA genes:	222
Interacting mature miRNAs:	280
Transcripts:	ENSRNOT00000024602
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2303030	Bp327	Blood pressure QTL 327			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	43736554	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH127882

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	39,290,925 - 39,291,112 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,514,646 - 44,514,832	NCBI	Rnor6.0
Rnor_5.0	13	49,599,424 - 49,599,610	UniSTS	Rnor5.0
RGSC_v3.4	13	40,499,791 - 40,499,977	UniSTS	RGSC3.4
Celera	13	39,666,500 - 39,666,686	UniSTS
RH 3.4 Map	13	91.4	UniSTS
Cytogenetic Map	13	q12	UniSTS

RH130981

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	39,292,872 - 39,293,052 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,516,593 - 44,516,772	NCBI	Rnor6.0
Rnor_5.0	13	49,601,371 - 49,601,550	UniSTS	Rnor5.0
RGSC_v3.4	13	40,497,851 - 40,498,030	UniSTS	RGSC3.4
Celera	13	39,668,447 - 39,668,626	UniSTS
RH 3.4 Map	13	90.1	UniSTS
Cytogenetic Map	13	q12	UniSTS

BE115809

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	39,289,585 - 39,289,738 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,513,306 - 44,513,458	NCBI	Rnor6.0
Rnor_5.0	13	49,598,084 - 49,598,236	UniSTS	Rnor5.0
RGSC_v3.4	13	40,501,165 - 40,501,317	UniSTS	RGSC3.4
Celera	13	39,665,160 - 39,665,312	UniSTS
RH 3.4 Map	13	77.1	UniSTS
Cytogenetic Map	13	q12	UniSTS

RH140961

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	39,288,654 - 39,288,846 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,512,374 - 44,512,565	NCBI	Rnor6.0
Rnor_5.0	13	49,597,152 - 49,597,343	UniSTS	Rnor5.0
RGSC_v3.4	13	40,502,062 - 40,502,253	UniSTS	RGSC3.4
Celera	13	39,664,229 - 39,664,420	UniSTS
RH 3.4 Map	13	87.3	UniSTS
Cytogenetic Map	13	q12	UniSTS

RH141873

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	39,254,080 - 39,254,290 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,478,477 - 44,478,686	NCBI	Rnor6.0
Rnor_5.0	13	49,563,255 - 49,563,464	UniSTS	Rnor5.0
RGSC_v3.4	13	40,537,414 - 40,537,623	UniSTS	RGSC3.4
Celera	13	39,630,302 - 39,630,511	UniSTS
RH 3.4 Map	13	90.2	UniSTS
Cytogenetic Map	13	q12	UniSTS

BQ198886

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	39,291,044 - 39,291,202 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,514,765 - 44,514,922	NCBI	Rnor6.0
Rnor_5.0	13	49,599,543 - 49,599,700	UniSTS	Rnor5.0
RGSC_v3.4	13	40,499,701 - 40,499,858	UniSTS	RGSC3.4
Celera	13	39,666,619 - 39,666,776	UniSTS
RH 3.4 Map	13	78.5	UniSTS
Cytogenetic Map	13	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
23	13	83	217	91	90	59	153	59	6	486	279	22	195	117	124	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB294577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB294578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024602 ⟹ ENSRNOP00000024602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	41,804,046 - 41,844,488 (+)	Ensembl
mRatBN7.2 Ensembl	13	39,251,573 - 39,292,019 (+)	Ensembl
Rnor_6.0 Ensembl	13	44,475,970 - 44,515,739 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091645 ⟹ ENSRNOP00000069684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	44,475,973 - 44,512,388 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096878 ⟹ ENSRNOP00000085308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	41,804,054 - 41,843,490 (+)	Ensembl
mRatBN7.2 Ensembl	13	39,251,573 - 39,290,801 (+)	Ensembl

RefSeq Acc Id:

NM_001107171 ⟹ NP_001100641

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,804,046 - 41,844,488 (+)	NCBI
mRatBN7.2	13	39,251,573 - 39,292,019 (+)	NCBI
Rnor_6.0	13	44,475,970 - 44,515,739 (+)	NCBI
Rnor_5.0	13	49,560,733 - 49,601,670 (+)	NCBI
RGSC_v3.4	13	40,498,884 - 40,540,130 (-)	RGD
Celera	13	39,627,795 - 39,667,593 (+)	RGD

Sequence:

show sequence

GGCGGGCTAAGGGTGCGGGCGGAGGAGGAAGTGTCATGGCGTCGGGCCGTGGAGCTTCTTCTCG
CTGGTTCTTTACTCGAGAACAGCTGGAGAACACGCCGAGCCGCCGCTGCGGAGTGGAAGCGGAT
GAAGAGCTGTCGCATCGCCAGCAGGCGGCCAACCTCATCCAGGACATGGGGCAACGTCTTAATG
TCTCTCAGCTTACAATAAACACTGCGATTGTTTATATGCACAGGTTTTATATGCACCATTCTTT
CACCAAATTCAACAGAAATATAATATCACCTACCGCATTGTTTTTGGCTGCAAAAGTGGAAGAA
CAGGCTCGAAAGCTTGAACATGTTATCAAAGTAGCACACGCTTGTCTTCATCCCCTAGAGCCAC
TGCTGGATACAAAATGTGATGCATATCTTCAGCAGACTCAAGAACTGGTTTTACTTGAAACCAT
AATGCTACAAACACTGGGTTTTGAGATCACCATTGAACACCCACATACAGATGTGGTGAAATGC
ACCCAGTTAGTAAGAGCAAGCAAGGATTTGGCACAGACATCCTATTTCATGGCTACCAACAGTT
TGCATCTTACGACCTTCTGTCTTCAGTACAAACCCACAGTGATAGCATGTGTATGCATTCATTT
GGCTTGCAAATGGTCCAATTGGGAGATTCCTGTGTCAACGGATGGAAAGCACTGGTGGGAGTAT
GTGGACCCTACAGTTACCCTAGAGCTGCTAGATGAGCTAACACATGAGTTTCTACAAATATTGG
AGAAAACGCCTAGTAGGTTGAAGAGGATTCGAAACTGGAGGGCTATGGCTAAGAAACCAAAAGT
CGATGGACAAGTATCAGAGACACCACTGCTTGGTTCTTCTTTGGTCCAGAATTCCATTTTAGTA
GACAGTGTCACTGGTGTGCCTGCCAACCCAAGCTTTCAGAAGCCATCAACGTCAACGTTCCCTG
CTCCACTACCTCTAACTTCAGGAAGTACTTCTGTTCAAGATGGCCGTGCATCTGATACTGGATC
AGTGCTCGCAGGGATGCCTAGTTCCTCATACACTGTGTCATCACACCAAGAGTGGCCTCACCAT
CCAGACTCAGCCAGGACAGACCCGGTATACACACAGAAGCAGGAGGCCACTCTCTCTGGGAGCC
AGTACCTAAGCTTCCAGCAGGGACCTTCAATGGCACTGCATTCCGGATTACATCACAGGCCGGA
CAAAGTTGCTGATCATTCGTCAGCTAAGCAAGAATATACTCACAAAGGTGGGAGCAGCAAACAC
CATGGCCCCATACCTGCTACTCCTGGAGTGGTTCCTCAGAAAATGTCTTTAGATAAGTACAGAG
AGAAGCGGAAGCTGGAAACCCTTGACCTGGACTCGAGGGATCACTATATGGCTGCCCATGCAGA
GCAGCAGCACAAACATGGGCCAGCTCAGGCAGTCGCAGGCACTTCTGTCACTTCTCCCATCAAA
ATGAAGCTTCCCCTCACCAACTCCGACAAGCCTGAGAAACACTTGGCAGAGAAAAGGGAGAGGA
GTGGATCACTGAAGCTGCGGATCCCCATCCCACCGCCTGATAAAGGTCCCAGCAAGGAGGAGCT
GAAGATGAAAATCAAAGTGTCGTCCTCTGAGAGACACAGCTCTTCTGATGAAGGCAGTGGGAAG
AGCAAGCACTCGAGCCCACACATCAGCAGAGACCACAAGGAAAAGCACAAGGAGCACCCGGCCA
ACCGCCACCACAGCAGCCACAAGCATTTGCACATGCACAGCAGCGGAGGCAGCAAGCATGCTGA
CGGCATGCCACCCACTGTGCTGAGGAGTCCTGTGGGCCTGGGCCCTGAAGGCATCTCCTCCGGC
CCCAGTGCAAGGAAGAAGCTGCATATCAACGATGCCTCCCACAACCACCACTCCAAAATGAGCA
AAAGTTCCAAAAGTTCAGGTAGTTCATCTAGTTCTTCCTCTGTTAAGCAGTATCTATCCTCTCA
CAGCTCTGTTTTTAACCATCCCTTACCCCCTCCTCCCCCTGTCACATACCAGGTGGGCTACGGA
CATCTCAGCACCCTCGTGAAACTGGACAAGAAACCAGTGGAGCCCCACGGTCCTGAGGCCAATC
ACGAGTACAGTACAAGCAGCCAGCATATGGACTACAAAGACACATTCGACATGCTGGACTCGCT
GCTAAGTGCCCAAGGAATGAATATGTAACCCTTTGTTTAGGTCAACTTTTCCTTTCCTTTTTAA
TTTAAAAATGGTTGGAATGGAAAATGCCCTCCTGGTCCAGCGGTGGTGCCACTGCTTCCGTATT
TGTAAGTGCTGCTTTGTTCTTCATTCTGAAAGAAGAGATGATAGTAAACAAGCCTATCTCCACA
TACATAGTGCTACCAGGACTGTAAGCCGCTTGGAAGACGCAGCTGGGAACATTAGGGTGAATGG
CTGGCTGCTGCTAGGAACCCAAGCTGCCTCAAGCCTCTGTTGTTTAGGATTCGAGTATCGTAGC
TGGTTTTTTGTTGTTGCTTGGCTTTGAATGAGTGTCAATTGTTTTCTTTTGTGTATTTATACTT
GTATGTATGGTTTGCATGTCTCAGTGATAAAGGGATAACAGTACACTGACAACTGTTTACAAGA
AAGTGGAGAAAAATGTACATACATTTTTGTATGTTTAGATATTACCATAAATACTCAGGATCGG
AGCTGCTTGTAAGTATAACAATAGACAGAATAACTTTATTTTCTCTCGTCAGAGTCCATCACTA
ATCTAAAACACAAGTGGCACTTTTTTATGTTAACCTTAAACTCTAGGCCTTACTGAAAGCCGCT
GAGGGGACACTTCACTACTAGACGGGAATGTGGTGCCACGGGTGGTCCTTAACACTGGGAAGCA
CTCAGTTTGCCCTCAGAGATTCTGACCAGAGTGGCTGCAGAATCAGCCACTGATTTCTGAAGGC
TTGAAGAGGAAAAAAAAAAAAAATAAAGTTTACATACTCTTGATGTGAAGTGCATTTAAATGTT
TGCCGGCTTGTTGCAGTGCTGTAGAAAAGCAGCTACTAATGTGTGTGAGGATGGCTGACTTCAC
TCACAGCCGCCCTCAGTGAAGGTCAGTCCATTTCTGCAAGAACGCTGACACTACAGGTTCTGGG
TGAGCAGGGGTCACGTTTCCTTTAGCATTTGCAGTGACACCATAGTCTTGAATATATATTACTC
TTCCCCTGGGGAGAGAGAGTATGAGAGAGCGAGAGCGTGAGTGTGCGTGCGTGCGTGCGTGCGT
GCGTGCGTGCGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAGAGAGA
GAGAGATACCATATTTCTTTTTCAGGTAAATGCAGTCTTCCTTATAAAAATGAAATTAAACCTA
TGCTCTCTTGATTCTTTTATATTCTAACAATAAATAAAAAAGAAAAGATTGCTGACTGTGCATT
GTACCTGTATTTATAGCTTATGGTCATTATCAGGAAAATGTAAGAAAAAAGGCCAACCTCCGGC
AAGCCACTGCTGGGGGTTTTACATTGGTTTGCACGTCTTAGTAGGTTCTCATTGAGGTAATGCT
TGCACTGTCACCTGACGCCTGGTCAGGAGATAGACTGACTGACTTGTCTAACTTTTGGTGTAAG
CACCAATAGTATGGCTCTTGTCTCTTGCCTAATCTTGAATTTATTTCTGTGGTAAGTCTTCGCT
GTTGAGTCTCTTAAGATGGGTCGGATTCAACTTGTATTGAATCACAAGTTTTCCTTTGTATATG
AAATGTTTTGTTATAAAGCCACTGATCTGTGCACAATTGTAATTTTATTCAAGTATGTTGTGGT
TGTAAATATTAGAGTTGAGCCTTGTACTCTACTTTTATTTAGCAGTTATCTAATTTGCCAGTAG
CTATTTGTTTGTTTGTTTGTTTTAAAGAAAATTGTTGATTATTTTGTCAATGTTATTTGAACCT
GGGATGTCAGGAGCTTCTTTGTGGAAACTCAGCCAAGCAGGCTAGTGTCACTCTGTTCTTGTCT
TGCATTGGTAATCTTTGTCACTCTGATTTTTGTTGCTATGTGGTATACATTGTATCATACACAT
GATTTTGATACAGTTTGGTTTTACCGTGGTACAATTCCAAGAACTAGCATAGAATTTAAACAGA
GTACAAGGTGAGGGAGGGAAGGGTTTTGTTCTTGGTGATTTAGATGTGAAACCTCAACAGAGCA
TCATGTGAACTGACACGAGGTGTTGTGCTACTGTATCATTGGGAGTGATGCCAGGAATTCTAAT
CCGCCTTTGTAAAGAGTATCCAGAGAAGTAGTGAACTTAATTTCAGTATGACATAGAAAACAAT
GTGAATATTTAAGGTCTGGGGCTCTAGTTAAACTTCACTAAGGGTTTTCAGAAATGTGTTGTTT
TTCGTTTGTTTTTGTTTTTTTGTTGTTTTGGTTTTTTTAGCTATGGGAATAAAGGTAATTTTGT
TGAATCTTTATTGGTGCTAATGATGGACAGTTAAACAGATAGTGTATATGCCGTGGATCAGTAC
ACCTAGTGCTTCCAGAACGGACTCTGAAATGCTGTGTGTTCACTTTCACTCTGTAAATGTAATT
CTTTACAATGACTATTTATTAAAGGGCAGTCAGTTGTGATTTTTACAGGATTGTGTGAACTGTT
CAAACTCTTCAACCTCAGAACAAGATGCTAAAACCACAATGGGGGATAATTTGTGACTCCTTGT
TTCCTTTCCACTAAGGAAAACCCTCATAATTCATATCACCATGAATTTGCTTGAAAGATCTTGT
TTGCATAACATAGTTCTTTGCATGGTCCCATTAGACTCTACCAAAGAAAAAAGACTCAATAAAT
GGACATTCTATTGCGAGTCTTGTAAGTAGCCATAAATAACCAAAATAGTATCGAATTTAGATGT
GAAATTTCACATGTGCATAGTACTGTTAAGGTGATACATTTTTGATGAGTTTTTAATACTTGAA
AATAATTAAAAAGCATTATCTTTACATCATCCCATAACAGAGTGATTCATTCTTAGGGTGTGTT
TCCCTAGGTTTTCAACCTTTTTGCAAAAAACATTGTTATCAGAGGCTTCCTGTCTACCTCTCTC
AGCTAATTTTCTAAAATCAAGATGAGCTTCCTAAATATTTGCCTTAGCTACTAACACAAGCTGT
CTTCAGAACCAAAGCAAAGGAGTGTTTATTTGTGGGAGCCATCTTGGAGGCCTGCATTACAAAC
TCGGTGCCAGTGCCCACTGGTAGAGAAGGCCCCTCATGTCCTCTAGTAGCAGGTAGCGGTAAAG
GCAACAGTGCCAGTCGTGGGTACACTTTAAAGCGATGGATACTGGTGTTAGAGTCTTCAGCTTT
AAAGATGCCTTCCATGGTATTAGGTGTTGTTTTGTTAGGAACGTCATGAGTACACACTTCGTGC
CAATAGTGATTATACAGAACTCCCAAACATTTGGACCAATCCGTTCCCTTTGAAGTAAAAAATT
GAACAGGTTAGATTTGCTTTAGAGAACCAGTTTAAAAAGTTTGATTAGTTACCAAATACCTTGC
CTTAAGATGTTTCAAGTATATTTTCTTAGAATTTAAATTCTAATTGTATTCCTTAGCCAGCCTG
AGGAATAAGCCGCTGCCTAT

hide sequence

RefSeq Acc Id:

XM_006249686 ⟹ XP_006249748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,804,007 - 41,845,641 (+)	NCBI
mRatBN7.2	13	39,251,576 - 39,293,172 (+)	NCBI
Rnor_6.0	13	44,475,959 - 44,516,892 (+)	NCBI
Rnor_5.0	13	49,560,733 - 49,601,670 (+)	NCBI

Sequence:

show sequence

GGCGGGGAGGGGGCGGGCTAAGGGTGCGGGCGGAGGAGGAAGTGTCATGGCGTCGGGCCGTGGA
GCTTCTTCTCGCTGGTTCTTTACTCGAGAACAGCTGGAGAACACGCCGAGCCGCCGCTGCGGAG
TGGAAGCGGATGAAGAGCTGTCGCATCGCCAGCAGGCGGCCAACCTCATCCAGGACATGGGGCA
ACGTCTTAATGTCTCTCAGCTTACAATAAACACTGCGATTGTTTATATGCACAGGTTTTATATG
CACCATTCTTTCACCAAATTCAACAGAAATATAATATCACCTACCGCATTGTTTTTGGCTGCAA
AAGTGGAAGAACAGGCTCGAAAGCTTGAACATGTTATCAAAGTAGCACACGCTTGTCTTCATCC
CCTAGAGCCACTGCTGGATACAAAATGTGATGCATATCTTCAGCAGACTCAAGAACTGGTTTTA
CTTGAAACCATAATGCTACAAACACTGGGTTTTGAGATCACCATTGAACACCCACATACAGATG
TGGTGAAATGCACCCAGTTAGTAAGAGCAAGCAAGGATTTGGCACAGACATCCTATTTCATGGC
TACCAACAGTTTGCATCTTACGACCTTCTGTCTTCAGTACAAACCCACAGTGATAGCATGTGTA
TGCATTCATTTGGCTTGCAAATGGTCCAATTGGGAGATTCCTGTGTCAACGGATGGAAAGCACT
GGTGGGAGTATGTGGACCCTACAGTTACCCTAGAGCTGCTAGATGAGCTAACACATGAGTTTCT
ACAAATATTGGAGAAAACGCCTAGTAGGTTGAAGAGGATTCGAAACTGGAGGGCTATGGCTAAG
AAACCAAAAGTCGATGGACAAGTATCAGAGACACCACTGCTTGGTTCTTCTTTGGTCCAGAATT
CCATTTTAGTAGACAGTGTCACTGGTGTGCCTGCCAACCCAAGCTTTCAGAAGCCATCAACGTC
AACGTTCCCTGCTCCACTACCTCTAACTTCAGGAAGTACTTCTGTTCAAGATGGCCGTGCATCT
GATACTGGATCAGTGCTCGCAGGGATGCCTAGTTCCTCATACACTGTGTCATCACACCAAGAGT
GGCCTCACCATCCAGACTCAGCCAGGACAGACCCGGTATACACACAGAAGCAGGAGGCCACTCT
CTCTGGGAGCCAGTACCTAAGCTTCCAGCAGGGACCTTCAATGGCACTGCATTCCGGATTACAT
CACAGGCCGGACAAAGTTGCTGATCATTCGTCAGCTAAGCAAGAATATACTCACAAAGGTGGGA
GCAGCAAACACCATGGCCCCATACCTGCTACTCCTGGAGTGGTTCCTCAGAAAATGTCTTTAGA
TAAGTACAGAGAGAAGCGGAAGCTGGAAACCCTTGACCTGGACTCGAGGGATCACTATATGGCT
GCCCATGCAGAGCAGCAGCACAAACATGGGCCAGCTCAGGCAGTCGCAGGCACTTCTGTCACTT
CTCCCATCAAAATGAAGCTTCCCCTCACCAACTCCGACAAGCCTGAGAAACACTTGGCAGAGAA
AAGGGAGAGGAGTGGATCACTGAAGCTGCGGATCCCCATCCCACCGCCTGATAAAGGTCCCAGC
AAGGAGGAGCTGAAGATGAAAATCAAAGTGTCGTCCTCTGAGAGACACAGCTCTTCTGATGAAG
GCAGTGGGAAGAGCAAGCACTCGAGCCCACACATCAGCAGAGACCACAAGGAAAAGCACAAGGA
GCACCCGGCCAACCGCCACCACAGCAGCCACAAGCATTTGCACATGCACAGCAGCGGAGGCAGC
AAGCATGCTGACGGCATGCCACCCACTGTGCTGAGGAGTCCTGTGGGCCTGGGCCCTGAAGGCA
TCTCCTCCGGCCCCAGTGCAAGGAAGAAGCTGCATATCAACGATGCCTCCCACAACCACCACTC
CAAAATGAGCAAAAGTTCCAAAAGTTCAGGTGGGCTACGGACATCTCAGCACCCTCGTGAAACT
GGACAAGAAACCAGTGGAGCCCCACGGTCCTGAGGCCAATCACGAGTACAGTACAAGCAGCCAG
CATATGGACTACAAAGACACATTCGACATGCTGGACTCGCTGCTAAGTGCCCAAGGAATGAATA
TGTAACCCTTTGTTTAGGTCAACTTTTCCTTTCCTTTTTAATTTAAAAATGGTTGGAATGGAAA
ATGCCCTCCTGGTCCAGCGGTGGTGCCACTGCTTCCGTATTTGTAAGTGCTGCTTTGTTCTTCA
TTCTGAAAGAAGAGATGATAGTAAACAAGCCTATCTCCACATACATAGTGCTACCAGGACTGTA
AGCCGCTTGGAAGACGCAGCTGGGAACATTAGGGTGAATGGCTGGCTGCTGCTAGGAACCCAAG
CTGCCTCAAGCCTCTGTTGTTTAGGATTCGAGTATCGTAGCTGGTTTTTTGTTGTTGCTTGGCT
TTGAATGAGTGTCAATTGTTTTCTTTTGTGTATTTATACTTGTATGTATGGTTTGCATGTCTCA
GTGATAAAGGGATAACAGTACACTGACAACTGTTTACAAGAAAGTGGAGAAAAATGTACATACA
TTTTTGTATGTTTAGATATTACCATAAATACTCAGGATCGGAGCTGCTTGTAAGTATAACAATA
GACAGAATAACTTTATTTTCTCTCGTCAGAGTCCATCACTAATCTAAAACACAAGTGGCACTTT
TTTATGTTAACCTTAAACTCTAGGCCTTACTGAAAGCCGCTGAGGGGACACTTCACTACTAGAC
GGGAATGTGGTGCCACGGGTGGTCCTTAACACTGGGAAGCACTCAGTTTGCCCTCAGAGATTCT
GACCAGAGTGGCTGCAGAGATCAGCCGCTGATTTCTGAAGGCTTGAAGAGGAAAAAAAAAAAAA
ATAAAGTTTACATACTCTTGATGTGAAGTGCATTTAAATGTTTGCCGGCTTGTTGCAGTGCTGT
AGAAAAGCAGCTACTAATGTGTGTGAGGATGGCTGACTTCACTCACAGCCGCCCTCAGTGAAGG
TCAGTCCATTTCTGCAAGAACGCTGACACTACAGGTTCTGGGTGAGCAGGGGTCACGTTTCCTT
TAGCATTTGCAGTGACACCATAGTCTTGAATATATATTACTCTTCCCCTGGGGAGAGAGAGTAT
GAGAGAGCGAGAGCGTGAGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAGAGAGAGAGAGATACCATATTTCTTTTT
CAGGTAAATGCAGTCTTCCTTATAAAAATGAAATTAAACCTATGCTCTCTTGATTCTTTTATAT
TCTAACAATAAATAAAAAAGAAAAGATTGCTGACTGTGCATTGTACCTGTATTTATAGCTTATG
GTCATTATCAGGAAAATGTAAGAAAAAAGGCCAACCTCCGGCAAGCCACTGCTGGGGGTTTTAC
ATTGGTTTGCACGTCTTAGTAGGTTCTCATTGAGGTAATGCTTGCACTGTCACCTGACGCCTGG
TCAGGAGATAGACTGACTGACTTGTCTAACTTTTGGTGTAAGCACCAATAGTATGGCTCTTGTC
TCTTGCCTAATCTTGAATTTATTTCTGTGGTAAGTCTTCGCTGTTGAGTCTCTTAAGATGGGTC
GGATTCAACTTGTATTGAATCACAAGTTTTCCTTTGTATATGAAATGTTTTGTTATAAAGCCAC
TGATCTGTGCACAATTGTAATTTTATTCAAGTATGTTGTGGTTGTAAATATTAGAGTTGAGCCT
TGTACTCTACTTTTATTTAGCAGTTATCTAATTTGCCAGTAGCTATTTGTTTGTTTGTTTGTTT
TAAAGAAAATTGTTGATTATTTTGTCAATGTTATTTGAACCTGGGATGTCAGGAGCTTCTTTGT
GGAAACTCAGCCAAGCAGGCTAGTGTCACTCTGTTCTTGTCTTGCATTGGTAATCTTTGTCACT
CTGATTTTTGTTGCTATGTGGTATACATTGTATCATACACATGATTTTGATACAGTTTGGTTTT
ACCGTGGTACAATTCCAAGAACTAGCATAGAATTTAAACAGAGTACAAGGTGAGGGAGGGAAGG
GTTTTGTTCTTGGTGATTTAGATGTGAAACCTCAACAGAGCATCATGTGAACTGACACGAGGTG
TTGTGCTACTGTATCATTGGGAGTGATGCCAGGAATTCTAATCCGCCTTTGTAAAGAGTATCCA
GAGAAGTAGTGAACTTAATTTCAGTATGACATAGAAAACAATGTGAATATTTAAGGTCTGGGGC
TCTAGTTAAACTTCACTAAGGGTTTTCAGAAATGTGTTGTTTTTCGTTTGTTTTTGTTTTTTTG
TTGTTTTGGTTTTTTTAGCTATGGGAATAAAGGTAATTTTGTTGAATCTTTATTGGTGCTAATG
ATGGACAGTTAAACAGATAGTGTATATGCCGTGGATCAGTACACCTAGTGCTTCCAGAACGGAC
TCTGAAATGCTGTGTGTTCACTTTCACTCTGTAAATGTAATTCTTTACAATGACTATTTATTAA
AGGGCAGTCAGTTGTGATTTTTACAGGATTGTGTGAACTGTTCAAACTCTTCAACCTCAGAACA
AGATGCTAAAACCACAATGGGGGATAATTTGTGACTCCTTGTTTCCTTTCCACTAAGGAAAACC
CTCATAATTCATATCACCATGAATTTGCTTGAAAGATCTTGTTTGCATAACATAGTTCTTTGCA
TGGTCCCATTAGACTCTACCAAAGAAAAAAGACTCAATAAATGGACATTCTATTGCGAGTCTTG
TAAGTAGCCATAAATAACCAAAATAGTATCGAATTTAGATGTGAAATTTCACATGTGCATAGTA
CTGTTAAGGTGATACATTTTTGATGAGTTTTTAATACTTGAAAATAATTAAAAAGCATTATCTT
TACATCATCCCATAACAGAGTGATTCATTCTTAGGGTGTGTTTCCCTAGGTTTTCAACCTTTTT
GCAAAAAACATTGTTATCAGAGGCTTCCTGTCTACCTCTCTCAGCTAATTTTCTAAAATCAAGA
TGAGCTTCCTAAATATTTGCCTTAGCTACTAACACAAGCTGTCTTCAGAACCAAAGCAAAGGAG
TGTTTATTTGTGGGAGCCATCTTGGAGGCCTGCATTACAAACTCGGTGCCAGTGCCCACTGGTA
GAGAAGGCCCCTCATGTCCTCTAGTAGCAGGTAGCGGTAAAGGCAACAGTGCCAGTCGTGGGTA
CACTTTAAAGCGATGGATACTGGTGTTAGAGTCTTCAGCTTTAAAGATGCCTTCCATGGTATTA
GGTGTTGTTTTGTTAGGAACGTCATGAGTACACACTTCGTGCCAATAGTGATTATACAGAACTC
CCAAACATTTGGACCAATCCGTTCCCTTTGAAGTAAAAAATTGAACAGGTTAGATTTGCTTTAG
AGAACCAGTTTAAAAAGTTTGATTAGTTACCAAATACCTTGCCTTAAGATGTTTCAAGTATATT
TTCTTAGAATTTAAATTCTAATTGTATTCCTTAGCCAGCCTGAGGAATAAGCCGCTGCCTATAT
GACGCATGGGTGGAGCATGATTTATTGGTTAGAGGAAGAAGACTCCTGAATTATGGAGATGGCT
CATTTAGATAACATCTCGGAAAGAGACGATTGTCTCTGGGATCTTTGAGATGAGACTCAGTCTT
GCTCTATAACAAGGTAAAGGGCTGACTTTTTAAATCTCTCCTCCTGCCTCCACCCATGCCTGGA
TCAGTGATTCTTAACTTACACTCAATCTTATATAAGCAAAAAAGTACTTCAAACTTAAGACCTA
ATTTGCCTGAAGATTCTGAGGATTTTTTTTTTCCTGAGAAAATTCTGGAAGCTCTTAGTAGCTA
AGGACCTTTGACTTCGTATCTCTAGATTCAGCAGTCCCCCCTCAGGAGCCTTTCCTGGGAGGCA
GTAGGATCCACTCACCACATTTCCACAGGGGAAGAGTGAGCAGAGCCCCACATAGGAGACCAGG
AGTTGATGGAATTGGGCTTAATTCTGTGCCTTTTGTTTTATGGTAGGCAGAGTGCATTCCTGTT
TTTCCTCAGTACTTGTTGTTGAGACCAAGGGTGTGTATGCACAGCTGTAGTACAAACCAACAGA
TGGTTGGAGGGCAACTTTGACCAGGACAGAAGCCAAGTCCTGCTCACTGGAAACTTAGTCTGTG
ATCTTGGTACTACAAGCTCTAAGTATGTTCCATTATTTCAGTTTTTGAATTGTGCCCAGCCAGC
ACTCTTTGCTTTGTGAGTCCCTTTTTCTGGTTTATAATTCACCATTGATCCTGCCTGGCATATT
TCTTGAGGTATGCTTCATGGGTGGGAGCAGTTCTGTCTGTATAAAGCTGACTTCATCCTTCACT
GCAATTCAGTAATGTCAAGTCAATCCTGTGGACTCTGTGGTTTCTTTTGTTTCCAAGTTGGGAG
AGGAAGCCTCACTTAGCCTCCAGCCAACGAGTTGAGTTAGTAGTGTGTAACTTGCTCCACCTGG
TAGTAAGTAGCTCTCTTGATTAGGAAAACGTCCCTGGAGTACCATTTTGTTGTGAACGGTGGAA
TTTGAACATTCAAAACCCTTGTGGATAATTGAATGAAACAAGAAAATGTGTATATTGGCATGAA
CTAGCCTTTGAATTTCATCTCATTACATAAGGAATTATTAATAAAGTTTGTTTATTGACCAAA

hide sequence

RefSeq Acc Id:

XM_017598786 ⟹ XP_017454275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,831,899 - 41,845,641 (+)	NCBI
mRatBN7.2	13	39,279,429 - 39,293,172 (+)	NCBI
Rnor_6.0	13	44,504,897 - 44,516,892 (+)	NCBI

Sequence:

show sequence

GTTTTGAGATCACCATTGAACACCCACATACAGATGTGGTGAAATGCACCCAGTTAGTAAGAGA
TCTATGGGGGATAGCAAGAAACATTTGAGTGAATGTTGTTGAAGATTTTCAGTAGTATAGAAAA
TGATGGCGCTCTTGTGATATTTGTAAGTACAAGCAAGGATTTGGCACAGACATCCTATTTCATG
GCTACCAACAGTTTGCATCTTACGACCTTCTGTCTTCAGTACAAACCCACAGTGATAGCATGTG
TATGCATTCATTTGGCTTGCAAATGGTCCAATTGGGAGATTCCTGTGTCAACGGATGGAAAGCA
CTGGTGGGAGTATGTGGACCCTACAGTTACCCTAGAGCTGCTAGATGAGCTAACACATGAGTTT
CTACAAATATTGGAGAAAACGCCTAGTAGGTTGAAGAGGATTCGAAACTGGAGGGCTATGGCTA
AGAAACCAAAAGTCGATGGACAAGTATCAGAGACACCACTGCTTGGTTCTTCTTTGGTCCAGAA
TTCCATTTTAGTAGACAGTGTCACTGGTGTGCCTGCCAACCCAAGCTTTCAGAAGCCATCAACG
TCAACGTTCCCTGCTCCACTACCTCTAACTTCAGGAAGTACTTCTGTTCAAGATGGCCGTGCAT
CTGATACTGGATCAGTGCTCGCAGGGATGCCTAGTTCCTCATACACTGTGTCATCACACCAAGA
GTGGCCTCACCATCCAGACTCAGCCAGGACAGACCCGGTATACACACAGAAGCAGGAGGCCACT
CTCTCTGGGAGCCAGTACCTAAGCTTCCAGCAGGGACCTTCAATGGCACTGCATTCCGGATTAC
ATCACAGGCCGGACAAAGTTGCTGATCATTCGTCAGCTAAGCAAGAATATACTCACAAAGGTGG
GAGCAGCAAACACCATGGCCCCATACCTGCTACTCCTGGAGTGGTTCCTCAGAAAATGTCTTTA
GATAAGTACAGAGAGAAGCGGAAGCTGGAAACCCTTGACCTGGACTCGAGGGATCACTATATGG
CTGCCCATGCAGAGCAGCAGCACAAACATGGGCCAGCTCAGGCAGTCGCAGGCACTTCTGTCAC
TTCTCCCATCAAAATGAAGCTTCCCCTCACCAACTCCGACAAGCCTGAGAAACACTTGGCAGAG
AAAAGGGAGAGGAGTGGATCACTGAAGCTGCGGATCCCCATCCCACCGCCTGATAAAGGTCCCA
GCAAGGAGGAGCTGAAGATGAAAATCAAAGTGTCGTCCTCTGAGAGACACAGCTCTTCTGATGA
AGGCAGTGGGAAGAGCAAGCACTCGAGCCCACACATCAGCAGAGACCACAAGGAAAAGCACAAG
GAGCACCCGGCCAACCGCCACCACAGCAGCCACAAGCATTTGCACATGCACAGCAGCGGAGGCA
GCAAGCATGCTGACGGCATGCCACCCACTGTGCTGAGGAGTCCTGTGGGCCTGGGCCCTGAAGG
CATCTCCTCCGGCCCCAGTGCAAGGAAGAAGCTGCATATCAACGATGCCTCCCACAACCACCAC
TCCAAAATGAGCAAAAGTTCCAAAAGTTCAGGTAGTTCATCTAGTTCTTCCTCTGTTAAGCAGT
ATCTATCCTCTCACAGCTCTGTTTTTAACCATCCCTTACCCCCTCCTCCCCCTGTCACATACCA
GGTGGGCTACGGACATCTCAGCACCCTCGTGAAACTGGACAAGAAACCAGTGGAGCCCCACGGT
CCTGAGGCCAATCACGAGTACAGTACAAGCAGCCAGCATATGGACTACAAAGACACATTCGACA
TGCTGGACTCGCTGCTAAGTGCCCAAGGAATGAATATGTAACCCTTTGTTTAGGTCAACTTTTC
CTTTCCTTTTTAATTTAAAAATGGTTGGAATGGAAAATGCCCTCCTGGTCCAGCGGTGGTGCCA
CTGCTTCCGTATTTGTAAGTGCTGCTTTGTTCTTCATTCTGAAAGAAGAGATGATAGTAAACAA
GCCTATCTCCACATACATAGTGCTACCAGGACTGTAAGCCGCTTGGAAGACGCAGCTGGGAACA
TTAGGGTGAATGGCTGGCTGCTGCTAGGAACCCAAGCTGCCTCAAGCCTCTGTTGTTTAGGATT
CGAGTATCGTAGCTGGTTTTTTGTTGTTGCTTGGCTTTGAATGAGTGTCAATTGTTTTCTTTTG
TGTATTTATACTTGTATGTATGGTTTGCATGTCTCAGTGATAAAGGGATAACAGTACACTGACA
ACTGTTTACAAGAAAGTGGAGAAAAATGTACATACATTTTTGTATGTTTAGATATTACCATAAA
TACTCAGGATCGGAGCTGCTTGTAAGTATAACAATAGACAGAATAACTTTATTTTCTCTCGTCA
GAGTCCATCACTAATCTAAAACACAAGTGGCACTTTTTTATGTTAACCTTAAACTCTAGGCCTT
ACTGAAAGCCGCTGAGGGGACACTTCACTACTAGACGGGAATGTGGTGCCACGGGTGGTCCTTA
ACACTGGGAAGCACTCAGTTTGCCCTCAGAGATTCTGACCAGAGTGGCTGCAGAGATCAGCCGC
TGATTTCTGAAGGCTTGAAGAGGAAAAAAAAAAAAAATAAAGTTTACATACTCTTGATGTGAAG
TGCATTTAAATGTTTGCCGGCTTGTTGCAGTGCTGTAGAAAAGCAGCTACTAATGTGTGTGAGG
ATGGCTGACTTCACTCACAGCCGCCCTCAGTGAAGGTCAGTCCATTTCTGCAAGAACGCTGACA
CTACAGGTTCTGGGTGAGCAGGGGTCACGTTTCCTTTAGCATTTGCAGTGACACCATAGTCTTG
AATATATATTACTCTTCCCCTGGGGAGAGAGAGTATGAGAGAGCGAGAGCGTGAGTGTGCGTGC
GTGCGTGCGTGCGTGCGTGCGTGCGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTCTGTGAGAGAGAGAGAGATACCATATTTCTTTTTCAGGTAAATGCAGTCTTCCTTATAAAAA
TGAAATTAAACCTATGCTCTCTTGATTCTTTTATATTCTAACAATAAATAAAAAAGAAAAGATT
GCTGACTGTGCATTGTACCTGTATTTATAGCTTATGGTCATTATCAGGAAAATGTAAGAAAAAA
GGCCAACCTCCGGCAAGCCACTGCTGGGGGTTTTACATTGGTTTGCACGTCTTAGTAGGTTCTC
ATTGAGGTAATGCTTGCACTGTCACCTGACGCCTGGTCAGGAGATAGACTGACTGACTTGTCTA
ACTTTTGGTGTAAGCACCAATAGTATGGCTCTTGTCTCTTGCCTAATCTTGAATTTATTTCTGT
GGTAAGTCTTCGCTGTTGAGTCTCTTAAGATGGGTCGGATTCAACTTGTATTGAATCACAAGTT
TTCCTTTGTATATGAAATGTTTTGTTATAAAGCCACTGATCTGTGCACAATTGTAATTTTATTC
AAGTATGTTGTGGTTGTAAATATTAGAGTTGAGCCTTGTACTCTACTTTTATTTAGCAGTTATC
TAATTTGCCAGTAGCTATTTGTTTGTTTGTTTGTTTTAAAGAAAATTGTTGATTATTTTGTCAA
TGTTATTTGAACCTGGGATGTCAGGAGCTTCTTTGTGGAAACTCAGCCAAGCAGGCTAGTGTCA
CTCTGTTCTTGTCTTGCATTGGTAATCTTTGTCACTCTGATTTTTGTTGCTATGTGGTATACAT
TGTATCATACACATGATTTTGATACAGTTTGGTTTTACCGTGGTACAATTCCAAGAACTAGCAT
AGAATTTAAACAGAGTACAAGGTGAGGGAGGGAAGGGTTTTGTTCTTGGTGATTTAGATGTGAA
ACCTCAACAGAGCATCATGTGAACTGACACGAGGTGTTGTGCTACTGTATCATTGGGAGTGATG
CCAGGAATTCTAATCCGCCTTTGTAAAGAGTATCCAGAGAAGTAGTGAACTTAATTTCAGTATG
ACATAGAAAACAATGTGAATATTTAAGGTCTGGGGCTCTAGTTAAACTTCACTAAGGGTTTTCA
GAAATGTGTTGTTTTTCGTTTGTTTTTGTTTTTTTGTTGTTTTGGTTTTTTTAGCTATGGGAAT
AAAGGTAATTTTGTTGAATCTTTATTGGTGCTAATGATGGACAGTTAAACAGATAGTGTATATG
CCGTGGATCAGTACACCTAGTGCTTCCAGAACGGACTCTGAAATGCTGTGTGTTCACTTTCACT
CTGTAAATGTAATTCTTTACAATGACTATTTATTAAAGGGCAGTCAGTTGTGATTTTTACAGGA
TTGTGTGAACTGTTCAAACTCTTCAACCTCAGAACAAGATGCTAAAACCACAATGGGGGATAAT
TTGTGACTCCTTGTTTCCTTTCCACTAAGGAAAACCCTCATAATTCATATCACCATGAATTTGC
TTGAAAGATCTTGTTTGCATAACATAGTTCTTTGCATGGTCCCATTAGACTCTACCAAAGAAAA
AAGACTCAATAAATGGACATTCTATTGCGAGTCTTGTAAGTAGCCATAAATAACCAAAATAGTA
TCGAATTTAGATGTGAAATTTCACATGTGCATAGTACTGTTAAGGTGATACATTTTTGATGAGT
TTTTAATACTTGAAAATAATTAAAAAGCATTATCTTTACATCATCCCATAACAGAGTGATTCAT
TCTTAGGGTGTGTTTCCCTAGGTTTTCAACCTTTTTGCAAAAAACATTGTTATCAGAGGCTTCC
TGTCTACCTCTCTCAGCTAATTTTCTAAAATCAAGATGAGCTTCCTAAATATTTGCCTTAGCTA
CTAACACAAGCTGTCTTCAGAACCAAAGCAAAGGAGTGTTTATTTGTGGGAGCCATCTTGGAGG
CCTGCATTACAAACTCGGTGCCAGTGCCCACTGGTAGAGAAGGCCCCTCATGTCCTCTAGTAGC
AGGTAGCGGTAAAGGCAACAGTGCCAGTCGTGGGTACACTTTAAAGCGATGGATACTGGTGTTA
GAGTCTTCAGCTTTAAAGATGCCTTCCATGGTATTAGGTGTTGTTTTGTTAGGAACGTCATGAG
TACACACTTCGTGCCAATAGTGATTATACAGAACTCCCAAACATTTGGACCAATCCGTTCCCTT
TGAAGTAAAAAATTGAACAGGTTAGATTTGCTTTAGAGAACCAGTTTAAAAAGTTTGATTAGTT
ACCAAATACCTTGCCTTAAGATGTTTCAAGTATATTTTCTTAGAATTTAAATTCTAATTGTATT
CCTTAGCCAGCCTGAGGAATAAGCCGCTGCCTATATGACGCATGGGTGGAGCATGATTTATTGG
TTAGAGGAAGAAGACTCCTGAATTATGGAGATGGCTCATTTAGATAACATCTCGGAAAGAGACG
ATTGTCTCTGGGATCTTTGAGATGAGACTCAGTCTTGCTCTATAACAAGGTAAAGGGCTGACTT
TTTAAATCTCTCCTCCTGCCTCCACCCATGCCTGGATCAGTGATTCTTAACTTACACTCAATCT
TATATAAGCAAAAAAGTACTTCAAACTTAAGACCTAATTTGCCTGAAGATTCTGAGGATTTTTT
TTTTCCTGAGAAAATTCTGGAAGCTCTTAGTAGCTAAGGACCTTTGACTTCGTATCTCTAGATT
CAGCAGTCCCCCCTCAGGAGCCTTTCCTGGGAGGCAGTAGGATCCACTCACCACATTTCCACAG
GGGAAGAGTGAGCAGAGCCCCACATAGGAGACCAGGAGTTGATGGAATTGGGCTTAATTCTGTG
CCTTTTGTTTTATGGTAGGCAGAGTGCATTCCTGTTTTTCCTCAGTACTTGTTGTTGAGACCAA
GGGTGTGTATGCACAGCTGTAGTACAAACCAACAGATGGTTGGAGGGCAACTTTGACCAGGACA
GAAGCCAAGTCCTGCTCACTGGAAACTTAGTCTGTGATCTTGGTACTACAAGCTCTAAGTATGT
TCCATTATTTCAGTTTTTGAATTGTGCCCAGCCAGCACTCTTTGCTTTGTGAGTCCCTTTTTCT
GGTTTATAATTCACCATTGATCCTGCCTGGCATATTTCTTGAGGTATGCTTCATGGGTGGGAGC
AGTTCTGTCTGTATAAAGCTGACTTCATCCTTCACTGCAATTCAGTAATGTCAAGTCAATCCTG
TGGACTCTGTGGTTTCTTTTGTTTCCAAGTTGGGAGAGGAAGCCTCACTTAGCCTCCAGCCAAC
GAGTTGAGTTAGTAGTGTGTAACTTGCTCCACCTGGTAGTAAGTAGCTCTCTTGATTAGGAAAA
CGTCCCTGGAGTACCATTTTGTTGTGAACGGTGGAATTTGAACATTCAAAACCCTTGTGGATAA
TTGAATGAAACAAGAAAATGTGTATATTGGCATGAACTAGCCTTTGAATTTCATCTCATTACAT
AAGGAATTATTAATAAAGTTTGTTTATTGACCAAA

hide sequence

RefSeq Acc Id:

XM_017598787 ⟹ XP_017454276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,835,266 - 41,845,641 (+)	NCBI
mRatBN7.2	13	39,281,334 - 39,293,172 (+)	NCBI
Rnor_6.0	13	44,503,186 - 44,516,892 (+)	NCBI

Sequence:

show sequence

AAACCATAATGCTACAAACACTGGGTTTTGAGATCACCATTGAACACCCACATACAGATGTGGT
GAAATGCACCCAGTTAGTAAGAGGTGAGTGGTCCCTCAGCCGTCTGGGTGGGATGAATGCTGAT
GCTTTCTTTCCTCTAGGATTGTGTATTCTAGCCTTTGTTGGATTTTATTAAAAAGTACAAATGT
CATTTTGAAATAGTGTTCTGTATCTTAGTCATCTACCTCTGTCTGTTTTCCAAGTGCATTTGGT
TGCTTTTGTGTGGTGATGGAGAACACTAACAATGCTCATACCCTGCTATGGTGCTGGTACACCT
TATGTGAGCAAGACAGACCGCTTTGTGTCTGCTGTGGCTAGAGCCCTTCCCACAGGCTGCCGGC
ATTGCTTCTCTGGTTCCACTTGGATTGCCTAGAGTGTACCACAGCTTCTGGGGTCAGCTTCTGT
GTGTTCTTTCCTTTAGAAAGTAAAACCCTGTGGTTTGTTTGGGTCTCTCACTTGTAGGGCACAT
TCATTCTAAATCGGATTCATTTTACATCTAGATAGCATTTTATTTTGCAAAGAGCCACGTTGGA
AAGCAAGCCCAGAGGCTTCAAACCAGCATCTTTGCTAACAAAGTAGAGTTCTAAGACTAGGAAC
ACATATTACCAGAGAATCACTTTGCAAAACACATGTTTAAATTACAATTCCTATTCTTCACAAT
CATAAATATACTTTATAGCACCCTAGTTACAGTATAGAACCAAATAGCAACTAGCTGCACATGC
TAATAAAAACATGTGGGTTGGTCTCACTGAAAACTTGAAAGAATAAACCTATCTTTACAAGGTA
GCAAACCATATAATTTGCTCTAAATCAAGGAAGAGCCTAGTGAAGAAAGGCATTAGTATGTGTT
TAGCAAAGGTATATGTACTGCCTTAGTAGATAAGGCTGGATTTTAAATTGACACTTAAAAACTA
CAGATTCCCCAAAAGGCTTTGGGGTTTTTGTTTGTTTTGTTTTGATGTTGTTCTGTTCAAGTCT
AGTACCCTGAACCTTGAGTGCAAAGTAATTGTGTGTGTGTGTCTGACTGTCTGACTCAGCTTTG
AGGTGGCTGCACTTCTTCCCTTTAAAATTTTTCTTTTATCTTTACTGTCTTTGTTTCCTTTGCT
CTGTTACAATTTTGAACTAACAAGAACACTTTCTGTTCCTTCCTATAGTTAATTTAGATAACAG
CCCTTAAGAAACATGATACCACAATTGTGTGTTTTTATTACTGGATGGGGTTTTGGGTTGGGTG
GTGGTGGTGGGTAGATACGATTTGTGTGGAAGCCCTTACCTCCCACTCTAGATGAGACAGTTGC
TACTTTGCTGCACAATTGGCTGTTGTCATTTTACCAGGGACCTTTCACTCTGATCTCTCCTTCC
CTCCCCACCAGGAAAGAATACCATACTTAAGTCACACTGCCTCCAAGACCTCTGGTGCTCTGAC
AGTCTTCCTTAGCACAGCTCTGCCAGACCCAATCCCTTTTGTTAAACCTTCCCTTGATGATCAC
ATGGGGCAGCAGGGATTACAGGTGCCAAGAGTGAAAACTAGGAGGGGAAGGAGTTTGGGGGCTT
GGGGGTGGGGCTTGGGGCTGCTGAGCTAGTGATTTTTGATCAGAAGGGGTGGGGGTGGGGGCTG
GTGAGGTCTCTGTTGGGAAGAGTATGGGGTAGGGGAAGGGAAACTGTTGTAAGTGTCTTATGAA
TCTAGTTAAAAATTGCTTTCCTGTTGGGGACCAGTGTTGGAAGCATTCCCCCTAGAATAGTCCT
ACTTCTAGGTTTTATCTGTAATTGGAGTCTATAAGTTAAAAATAAGTACAGTGGAGCTTCCTAT
ATTCTGTTGATAATATATAATATATAATAATATATAATAACATGGTAAAGAACCAAGATTTATG
TTCTTAGATGTTTGGGGTGGGGGTTGTTTTGCTCAATTTTGAAGGAAATATTTAAGCCAGCCTA
AATATAATGACAGGATTAAGTTTGGCAGGCAACTCTTCGTATTTTGTATTAGACTTCAAAAATC
GTTTTTCTTCTTCTTCTTTTTTTTTTTTGTTTTGTTTTTTGTTTTGTTTTTGTTTTGTTTTTTT
AATCCAGGAGAATGCTTTATTTCAACTTTTAGCTGACTAGATGCTTAACTTAGTAACAAGTTTA
GCCCTTGTAACTGGCTAGCTAAAAGCAAATCGGCTTGTTTCTCAGATCTATGGGGGATAGCAAG
AAACATTTGAGTGAATGTTGTTGAAGATTTTCAGTAGTATAGAAAATGATGGCGCTCTTGTGAT
ATTTCAAGCAAGGATTTGGCACAGACATCCTATTTCATGGCTACCAACAGTTTGCATCTTACGA
CCTTCTGTCTTCAGTACAAACCCACAGTGATAGCATGTGTATGCATTCATTTGGCTTGCAAATG
GTCCAATTGGGAGATTCCTGTGTCAACGGATGGAAAGCACTGGTGGGAGTATGTGGACCCTACA
GTTACCCTAGAGCTGCTAGATGAGCTAACACATGAGTTTCTACAAATATTGGAGAAAACGCCTA
GTAGGTTGAAGAGGATTCGAAACTGGAGGGCTATGGCTAAGAAACCAAAAGTCGATGGACAAGT
ATCAGAGACACCACTGCTTGGTTCTTCTTTGGTCCAGAATTCCATTTTAGTAGACAGTGTCACT
GGTGTGCCTGCCAACCCAAGCTTTCAGAAGCCATCAACGTCAACGTTCCCTGCTCCACTACCTC
TAACTTCAGGAAGTACTTCTGTTCAAGATGGCCGTGCATCTGATACTGGATCAGTGCTCGCAGG
GATGCCTAGTTCCTCATACACTGTGTCATCACACCAAGAGTGGCCTCACCATCCAGACTCAGCC
AGGACAGACCCGGTATACACACAGAAGCAGGAGGCCACTCTCTCTGGGAGCCAGTACCTAAGCT
TCCAGCAGGGACCTTCAATGGCACTGCATTCCGGATTACATCACAGGCCGGACAAAGTTGCTGA
TCATTCGTCAGCTAAGCAAGAATATACTCACAAAGGTGGGAGCAGCAAACACCATGGCCCCATA
CCTGCTACTCCTGGAGTGGTTCCTCAGAAAATGTCTTTAGATAAGTACAGAGAGAAGCGGAAGC
TGGAAACCCTTGACCTGGACTCGAGGGATCACTATATGGCTGCCCATGCAGAGCAGCAGCACAA
ACATGGGCCAGCTCAGGCAGTCGCAGGCACTTCTGTCACTTCTCCCATCAAAATGAAGCTTCCC
CTCACCAACTCCGACAAGCCTGAGAAACACTTGGCAGAGAAAAGGGAGAGGAGTGGATCACTGA
AGCTGCGGATCCCCATCCCACCGCCTGATAAAGGTCCCAGCAAGGAGGAGCTGAAGATGAAAAT
CAAAGTGTCGTCCTCTGAGAGACACAGCTCTTCTGATGAAGGCAGTGGGAAGAGCAAGCACTCG
AGCCCACACATCAGCAGAGACCACAAGGAAAAGCACAAGGAGCACCCGGCCAACCGCCACCACA
GCAGCCACAAGCATTTGCACATGCACAGCAGCGGAGGCAGCAAGCATGCTGACGGCATGCCACC
CACTGTGCTGAGGAGTCCTGTGGGCCTGGGCCCTGAAGGCATCTCCTCCGGCCCCAGTGCAAGG
AAGAAGCTGCATATCAACGATGCCTCCCACAACCACCACTCCAAAATGAGCAAAAGTTCCAAAA
GTTCAGGTAGTTCATCTAGTTCTTCCTCTGTTAAGCAGTATCTATCCTCTCACAGCTCTGTTTT
TAACCATCCCTTACCCCCTCCTCCCCCTGTCACATACCAGGTGGGCTACGGACATCTCAGCACC
CTCGTGAAACTGGACAAGAAACCAGTGGAGCCCCACGGTCCTGAGGCCAATCACGAGTACAGTA
CAAGCAGCCAGCATATGGACTACAAAGACACATTCGACATGCTGGACTCGCTGCTAAGTGCCCA
AGGAATGAATATGTAACCCTTTGTTTAGGTCAACTTTTCCTTTCCTTTTTAATTTAAAAATGGT
TGGAATGGAAAATGCCCTCCTGGTCCAGCGGTGGTGCCACTGCTTCCGTATTTGTAAGTGCTGC
TTTGTTCTTCATTCTGAAAGAAGAGATGATAGTAAACAAGCCTATCTCCACATACATAGTGCTA
CCAGGACTGTAAGCCGCTTGGAAGACGCAGCTGGGAACATTAGGGTGAATGGCTGGCTGCTGCT
AGGAACCCAAGCTGCCTCAAGCCTCTGTTGTTTAGGATTCGAGTATCGTAGCTGGTTTTTTGTT
GTTGCTTGGCTTTGAATGAGTGTCAATTGTTTTCTTTTGTGTATTTATACTTGTATGTATGGTT
TGCATGTCTCAGTGATAAAGGGATAACAGTACACTGACAACTGTTTACAAGAAAGTGGAGAAAA
ATGTACATACATTTTTGTATGTTTAGATATTACCATAAATACTCAGGATCGGAGCTGCTTGTAA
GTATAACAATAGACAGAATAACTTTATTTTCTCTCGTCAGAGTCCATCACTAATCTAAAACACA
AGTGGCACTTTTTTATGTTAACCTTAAACTCTAGGCCTTACTGAAAGCCGCTGAGGGGACACTT
CACTACTAGACGGGAATGTGGTGCCACGGGTGGTCCTTAACACTGGGAAGCACTCAGTTTGCCC
TCAGAGATTCTGACCAGAGTGGCTGCAGAGATCAGCCGCTGATTTCTGAAGGCTTGAAGAGGAA
AAAAAAAAAAAATAAAGTTTACATACTCTTGATGTGAAGTGCATTTAAATGTTTGCCGGCTTGT
TGCAGTGCTGTAGAAAAGCAGCTACTAATGTGTGTGAGGATGGCTGACTTCACTCACAGCCGCC
CTCAGTGAAGGTCAGTCCATTTCTGCAAGAACGCTGACACTACAGGTTCTGGGTGAGCAGGGGT
CACGTTTCCTTTAGCATTTGCAGTGACACCATAGTCTTGAATATATATTACTCTTCCCCTGGGG
AGAGAGAGTATGAGAGAGCGAGAGCGTGAGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCG
TGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAGAGAGAGAGAGATACCA
TATTTCTTTTTCAGGTAAATGCAGTCTTCCTTATAAAAATGAAATTAAACCTATGCTCTCTTGA
TTCTTTTATATTCTAACAATAAATAAAAAAGAAAAGATTGCTGACTGTGCATTGTACCTGTATT
TATAGCTTATGGTCATTATCAGGAAAATGTAAGAAAAAAGGCCAACCTCCGGCAAGCCACTGCT
GGGGGTTTTACATTGGTTTGCACGTCTTAGTAGGTTCTCATTGAGGTAATGCTTGCACTGTCAC
CTGACGCCTGGTCAGGAGATAGACTGACTGACTTGTCTAACTTTTGGTGTAAGCACCAATAGTA
TGGCTCTTGTCTCTTGCCTAATCTTGAATTTATTTCTGTGGTAAGTCTTCGCTGTTGAGTCTCT
TAAGATGGGTCGGATTCAACTTGTATTGAATCACAAGTTTTCCTTTGTATATGAAATGTTTTGT
TATAAAGCCACTGATCTGTGCACAATTGTAATTTTATTCAAGTATGTTGTGGTTGTAAATATTA
GAGTTGAGCCTTGTACTCTACTTTTATTTAGCAGTTATCTAATTTGCCAGTAGCTATTTGTTTG
TTTGTTTGTTTTAAAGAAAATTGTTGATTATTTTGTCAATGTTATTTGAACCTGGGATGTCAGG
AGCTTCTTTGTGGAAACTCAGCCAAGCAGGCTAGTGTCACTCTGTTCTTGTCTTGCATTGGTAA
TCTTTGTCACTCTGATTTTTGTTGCTATGTGGTATACATTGTATCATACACATGATTTTGATAC
AGTTTGGTTTTACCGTGGTACAATTCCAAGAACTAGCATAGAATTTAAACAGAGTACAAGGTGA
GGGAGGGAAGGGTTTTGTTCTTGGTGATTTAGATGTGAAACCTCAACAGAGCATCATGTGAACT
GACACGAGGTGTTGTGCTACTGTATCATTGGGAGTGATGCCAGGAATTCTAATCCGCCTTTGTA
AAGAGTATCCAGAGAAGTAGTGAACTTAATTTCAGTATGACATAGAAAACAATGTGAATATTTA
AGGTCTGGGGCTCTAGTTAAACTTCACTAAGGGTTTTCAGAAATGTGTTGTTTTTCGTTTGTTT
TTGTTTTTTTGTTGTTTTGGTTTTTTTAGCTATGGGAATAAAGGTAATTTTGTTGAATCTTTAT
TGGTGCTAATGATGGACAGTTAAACAGATAGTGTATATGCCGTGGATCAGTACACCTAGTGCTT
CCAGAACGGACTCTGAAATGCTGTGTGTTCACTTTCACTCTGTAAATGTAATTCTTTACAATGA
CTATTTATTAAAGGGCAGTCAGTTGTGATTTTTACAGGATTGTGTGAACTGTTCAAACTCTTCA
ACCTCAGAACAAGATGCTAAAACCACAATGGGGGATAATTTGTGACTCCTTGTTTCCTTTCCAC
TAAGGAAAACCCTCATAATTCATATCACCATGAATTTGCTTGAAAGATCTTGTTTGCATAACAT
AGTTCTTTGCATGGTCCCATTAGACTCTACCAAAGAAAAAAGACTCAATAAATGGACATTCTAT
TGCGAGTCTTGTAAGTAGCCATAAATAACCAAAATAGTATCGAATTTAGATGTGAAATTTCACA
TGTGCATAGTACTGTTAAGGTGATACATTTTTGATGAGTTTTTAATACTTGAAAATAATTAAAA
AGCATTATCTTTACATCATCCCATAACAGAGTGATTCATTCTTAGGGTGTGTTTCCCTAGGTTT
TCAACCTTTTTGCAAAAAACATTGTTATCAGAGGCTTCCTGTCTACCTCTCTCAGCTAATTTTC
TAAAATCAAGATGAGCTTCCTAAATATTTGCCTTAGCTACTAACACAAGCTGTCTTCAGAACCA
AAGCAAAGGAGTGTTTATTTGTGGGAGCCATCTTGGAGGCCTGCATTACAAACTCGGTGCCAGT
GCCCACTGGTAGAGAAGGCCCCTCATGTCCTCTAGTAGCAGGTAGCGGTAAAGGCAACAGTGCC
AGTCGTGGGTACACTTTAAAGCGATGGATACTGGTGTTAGAGTCTTCAGCTTTAAAGATGCCTT
CCATGGTATTAGGTGTTGTTTTGTTAGGAACGTCATGAGTACACACTTCGTGCCAATAGTGATT
ATACAGAACTCCCAAACATTTGGACCAATCCGTTCCCTTTGAAGTAAAAAATTGAACAGGTTAG
ATTTGCTTTAGAGAACCAGTTTAAAAAGTTTGATTAGTTACCAAATACCTTGCCTTAAGATGTT
TCAAGTATATTTTCTTAGAATTTAAATTCTAATTGTATTCCTTAGCCAGCCTGAGGAATAAGCC
GCTGCCTATATGACGCATGGGTGGAGCATGATTTATTGGTTAGAGGAAGAAGACTCCTGAATTA
TGGAGATGGCTCATTTAGATAACATCTCGGAAAGAGACGATTGTCTCTGGGATCTTTGAGATGA
GACTCAGTCTTGCTCTATAACAAGGTAAAGGGCTGACTTTTTAAATCTCTCCTCCTGCCTCCAC
CCATGCCTGGATCAGTGATTCTTAACTTACACTCAATCTTATATAAGCAAAAAAGTACTTCAAA
CTTAAGACCTAATTTGCCTGAAGATTCTGAGGATTTTTTTTTTCCTGAGAAAATTCTGGAAGCT
CTTAGTAGCTAAGGACCTTTGACTTCGTATCTCTAGATTCAGCAGTCCCCCCTCAGGAGCCTTT
CCTGGGAGGCAGTAGGATCCACTCACCACATTTCCACAGGGGAAGAGTGAGCAGAGCCCCACAT
AGGAGACCAGGAGTTGATGGAATTGGGCTTAATTCTGTGCCTTTTGTTTTATGGTAGGCAGAGT
GCATTCCTGTTTTTCCTCAGTACTTGTTGTTGAGACCAAGGGTGTGTATGCACAGCTGTAGTAC
AAACCAACAGATGGTTGGAGGGCAACTTTGACCAGGACAGAAGCCAAGTCCTGCTCACTGGAAA
CTTAGTCTGTGATCTTGGTACTACAAGCTCTAAGTATGTTCCATTATTTCAGTTTTTGAATTGT
GCCCAGCCAGCACTCTTTGCTTTGTGAGTCCCTTTTTCTGGTTTATAATTCACCATTGATCCTG
CCTGGCATATTTCTTGAGGTATGCTTCATGGGTGGGAGCAGTTCTGTCTGTATAAAGCTGACTT
CATCCTTCACTGCAATTCAGTAATGTCAAGTCAATCCTGTGGACTCTGTGGTTTCTTTTGTTTC
CAAGTTGGGAGAGGAAGCCTCACTTAGCCTCCAGCCAACGAGTTGAGTTAGTAGTGTGTAACTT
GCTCCACCTGGTAGTAAGTAGCTCTCTTGATTAGGAAAACGTCCCTGGAGTACCATTTTGTTGT
GAACGGTGGAATTTGAACATTCAAAACCCTTGTGGATAATTGAATGAAACAAGAAAATGTGTAT
ATTGGCATGAACTAGCCTTTGAATTTCATCTCATTACATAAGGAATTATTAATAAAGTTTGTTT
ATTGACCAAA

hide sequence

RefSeq Acc Id:

XM_039090688 ⟹ XP_038946616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,835,267 - 41,845,641 (+)	NCBI
mRatBN7.2	13	39,281,334 - 39,293,172 (+)	NCBI

RefSeq Acc Id:

XM_063272276 ⟹ XP_063128346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,804,012 - 41,845,641 (+)	NCBI

RefSeq Acc Id:

XM_063272277 ⟹ XP_063128347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,804,012 - 41,845,641 (+)	NCBI

RefSeq Acc Id:

XM_063272278 ⟹ XP_063128348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	41,833,799 - 41,845,641 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100641	(Get FASTA)	NCBI Sequence Viewer
	XP_006249748	(Get FASTA)	NCBI Sequence Viewer
	XP_017454275	(Get FASTA)	NCBI Sequence Viewer
	XP_017454276	(Get FASTA)	NCBI Sequence Viewer
	XP_038946616	(Get FASTA)	NCBI Sequence Viewer
	XP_063128346	(Get FASTA)	NCBI Sequence Viewer
	XP_063128347	(Get FASTA)	NCBI Sequence Viewer
	XP_063128348	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAF94225	(Get FASTA)	NCBI Sequence Viewer
	BAF94245	(Get FASTA)	NCBI Sequence Viewer
	EDM09887	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024602
	ENSRNOP00000024602.5
	ENSRNOP00000085308
	ENSRNOP00000085308.2

RefSeq Acc Id:

NP_001100641 ⟸ NM_001107171

- UniProtKB:

D3ZGL6 (UniProtKB/TrEMBL), A6IBW0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASGRGASSRWFFTREQLENTPSRRCGVEADEELSHRQQAANLIQDMGQRLNVSQLTINTAIVY
MHRFYMHHSFTKFNRNIISPTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQ
TQELVLLETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKP
TVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPSRLKRIRN
WRAMAKKPKVDGQVSETPLLGSSLVQNSILVDSVTGVPANPSFQKPSTSTFPAPLPLTSGSTSV
QDGRASDTGSVLAGMPSSSYTVSSHQEWPHHPDSARTDPVYTQKQEATLSGSQYLSFQQGPSMA
LHSGLHHRPDKVADHSSAKQEYTHKGGSSKHHGPIPATPGVVPQKMSLDKYREKRKLETLDLDS
RDHYMAAHAEQQHKHGPAQAVAGTSVTSPIKMKLPLTNSDKPEKHLAEKRERSGSLKLRIPIPP
PDKGPSKEELKMKIKVSSSERHSSSDEGSGKSKHSSPHISRDHKEKHKEHPANRHHSSHKHLHM
HSSGGSKHADGMPPTVLRSPVGLGPEGISSGPSARKKLHINDASHNHHSKMSKSSKSSGSSSSS
SSVKQYLSSHSSVFNHPLPPPPPVTYQVGYGHLSTLVKLDKKPVEPHGPEANHEYSTSSQHMDY
KDTFDMLDSLLSAQGMNM

hide sequence

RefSeq Acc Id:	XP_006249748 ⟸ XM_006249686
- Peptide Label:	isoform X2
- UniProtKB:	A9CMA7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASGRGASSRWFFTREQLENTPSRRCGVEADEELSHRQQAANLIQDMGQRLNVSQLTINTAIVY MHRFYMHHSFTKFNRNIISPTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQ TQELVLLETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKP TVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPSRLKRIRN WRAMAKKPKVDGQVSETPLLGSSLVQNSILVDSVTGVPANPSFQKPSTSTFPAPLPLTSGSTSV QDGRASDTGSVLAGMPSSSYTVSSHQEWPHHPDSARTDPVYTQKQEATLSGSQYLSFQQGPSMA LHSGLHHRPDKVADHSSAKQEYTHKGGSSKHHGPIPATPGVVPQKMSLDKYREKRKLETLDLDS RDHYMAAHAEQQHKHGPAQAVAGTSVTSPIKMKLPLTNSDKPEKHLAEKRERSGSLKLRIPIPP PDKGPSKEELKMKIKVSSSERHSSSDEGSGKSKHSSPHISRDHKEKHKEHPANRHHSSHKHLHM HSSGGSKHADGMPPTVLRSPVGLGPEGISSGPSARKKLHINDASHNHHSKMSKSSKSSGGLRTS QHPRETGQETSGAPRS hide sequence

RefSeq Acc Id:

XP_017454276 ⟸ XM_017598787

- Peptide Label:

isoform X5

- Sequence:

show sequence

MATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHE
FLQILEKTPSRLKRIRNWRAMAKKPKVDGQVSETPLLGSSLVQNSILVDSVTGVPANPSFQKPS
TSTFPAPLPLTSGSTSVQDGRASDTGSVLAGMPSSSYTVSSHQEWPHHPDSARTDPVYTQKQEA
TLSGSQYLSFQQGPSMALHSGLHHRPDKVADHSSAKQEYTHKGGSSKHHGPIPATPGVVPQKMS
LDKYREKRKLETLDLDSRDHYMAAHAEQQHKHGPAQAVAGTSVTSPIKMKLPLTNSDKPEKHLA
EKRERSGSLKLRIPIPPPDKGPSKEELKMKIKVSSSERHSSSDEGSGKSKHSSPHISRDHKEKH
KEHPANRHHSSHKHLHMHSSGGSKHADGMPPTVLRSPVGLGPEGISSGPSARKKLHINDASHNH
HSKMSKSSKSSGSSSSSSSVKQYLSSHSSVFNHPLPPPPPVTYQVGYGHLSTLVKLDKKPVEPH
GPEANHEYSTSSQHMDYKDTFDMLDSLLSAQGMNM

hide sequence

RefSeq Acc Id:

XP_017454275 ⟸ XM_017598786

- Peptide Label:

isoform X4

- Sequence:

show sequence

MLLKIFSSIENDGALVIFVSTSKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN
WEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPSRLKRIRNWRAMAKKPKVDGQVSE
TPLLGSSLVQNSILVDSVTGVPANPSFQKPSTSTFPAPLPLTSGSTSVQDGRASDTGSVLAGMP
SSSYTVSSHQEWPHHPDSARTDPVYTQKQEATLSGSQYLSFQQGPSMALHSGLHHRPDKVADHS
SAKQEYTHKGGSSKHHGPIPATPGVVPQKMSLDKYREKRKLETLDLDSRDHYMAAHAEQQHKHG
PAQAVAGTSVTSPIKMKLPLTNSDKPEKHLAEKRERSGSLKLRIPIPPPDKGPSKEELKMKIKV
SSSERHSSSDEGSGKSKHSSPHISRDHKEKHKEHPANRHHSSHKHLHMHSSGGSKHADGMPPTV
LRSPVGLGPEGISSGPSARKKLHINDASHNHHSKMSKSSKSSGSSSSSSSVKQYLSSHSSVFNH
PLPPPPPVTYQVGYGHLSTLVKLDKKPVEPHGPEANHEYSTSSQHMDYKDTFDMLDSLLSAQGM
NM

hide sequence

Ensembl Acc Id:

ENSRNOP00000024602 ⟸ ENSRNOT00000024602

Ensembl Acc Id:

ENSRNOP00000069684 ⟸ ENSRNOT00000091645

RefSeq Acc Id:	XP_038946616 ⟸ XM_039090688
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000085308 ⟸ ENSRNOT00000096878

RefSeq Acc Id:	XP_063128346 ⟸ XM_063272276
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128347 ⟸ XM_063272277
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063128348 ⟸ XM_063272278
- Peptide Label:	isoform X4

Protein Domains

Cyclin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZGL6-F1-model_v2	AlphaFold	D3ZGL6	1-722	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698785

Promoter ID:

EPDNEW_R9301

Type:

multiple initiation site

Name:

Ccnt2_1

Description:

cyclin T2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	44,475,978 - 44,476,038	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309205	AgrOrtholog
BioCyc Gene	G2FUF-18432	BioCyc
Ensembl Genes	ENSRNOG00000017113	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024602	ENTREZGENE
	ENSRNOT00000024602.9	UniProtKB/TrEMBL
	ENSRNOT00000096878	ENTREZGENE
	ENSRNOT00000096878.2	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/TrEMBL
InterPro	Cyclin-like_sf	UniProtKB/TrEMBL
	Cyclin/Ssn8	UniProtKB/TrEMBL
	CYCLIN_CCNT2_rpt1	UniProtKB/TrEMBL
	CYCLIN_CCNT2_rpt2	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
	Cyclin_related	UniProtKB/TrEMBL
KEGG Report	rno:304758	UniProtKB/TrEMBL
NCBI Gene	304758	ENTREZGENE
PANTHER	PTHR10026	UniProtKB/TrEMBL
Pfam	Cyclin_N	UniProtKB/TrEMBL
	CycT2-like_C	UniProtKB/TrEMBL
PhenoGen	Ccnt2	PhenoGen
RatGTEx	ENSRNOG00000017113	RatGTEx
SMART	CYCLIN	UniProtKB/TrEMBL
Superfamily-SCOP	Cyclin_like	UniProtKB/TrEMBL
UniProt	A6IBW0	ENTREZGENE, UniProtKB/TrEMBL
	A9CMA7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZGL6	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A8I6A3M5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ccnt2	cyclin T2	Ccnt2_predicted	cyclin T2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ccnt2_predicted	cyclin T2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations