Col22a1 (collagen type XXII alpha 1 chain) - Rat Genome Database

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Gene: Col22a1 (collagen type XXII alpha 1 chain) Rattus norvegicus
Analyze
Symbol: Col22a1
Name: collagen type XXII alpha 1 chain
RGD ID: 1309081
Description: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in basement membrane. Human ortholog(s) of this gene implicated in intracranial aneurysm. Orthologous to human COL22A1 (collagen type XXII alpha 1 chain); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: collagen alpha-1(XXII) chain; collagen, type XXII, alpha 1; LOC315071; procollagen, type XXII, alpha 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87105,619,776 - 105,857,246 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7105,619,757 - 105,856,960 (-)EnsemblGRCr8
mRatBN7.27103,730,939 - 103,968,452 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7103,731,037 - 103,968,462 (-)EnsemblmRatBN7.2
Rnor_6.07113,014,896 - 113,251,165 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7113,015,747 - 113,228,439 (-)Ensemblrn6Rnor6.0
Rnor_5.07112,952,113 - 113,188,114 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47109,509,148 - 109,727,220 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7100,148,068 - 100,385,566 (-)NCBICelera
RGSC_v3.17109,707,515 - 109,806,673 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Collagen COL22A1 maintains vascular stability and mutations in COL22A1 are potentially associated with intracranial aneurysms. Ton QV, etal., Dis Model Mech. 2018 Dec 12;11(12). pii: 11/12/dmm033654. doi: 10.1242/dmm.033654.

Genomics

Comparative Map Data
Col22a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87105,619,776 - 105,857,246 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7105,619,757 - 105,856,960 (-)EnsemblGRCr8
mRatBN7.27103,730,939 - 103,968,452 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7103,731,037 - 103,968,462 (-)EnsemblmRatBN7.2
Rnor_6.07113,014,896 - 113,251,165 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7113,015,747 - 113,228,439 (-)Ensemblrn6Rnor6.0
Rnor_5.07112,952,113 - 113,188,114 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47109,509,148 - 109,727,220 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7100,148,068 - 100,385,566 (-)NCBICelera
RGSC_v3.17109,707,515 - 109,806,673 (-)NCBI
Cytogenetic Map7q34NCBI
COL22A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388138,588,235 - 138,914,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8138,588,235 - 138,914,063 (-)Ensemblhg38GRCh38
GRCh378139,600,478 - 139,926,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368139,669,660 - 139,995,418 (-)NCBIBuild 36Build 36hg18NCBI36
Celera8135,769,113 - 136,093,411 (-)NCBICelera
Cytogenetic Map8q24.23-q24.3NCBI
HuRef8135,079,773 - 135,237,211 (-)NCBIHuRef
HuRef8134,914,571 - 135,063,660 (-)NCBIHuRef
CHM1_18139,640,714 - 139,967,035 (-)NCBICHM1_1
T2T-CHM13v2.08139,706,248 - 140,033,632 (-)NCBIT2T-CHM13v2.0
Col22a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391571,667,644 - 71,906,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1571,667,644 - 71,906,076 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381571,795,795 - 72,150,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1571,795,795 - 72,034,227 (-)Ensemblmm10GRCm38
MGSCv371571,628,906 - 71,864,657 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361571,627,430 - 71,863,162 (-)NCBIMGSCv36mm8
Celera1573,299,139 - 73,536,682 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1532.31NCBI
Col22a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546112,597,488 - 12,848,410 (-)Ensembl
ChiLan1.0NW_00495546112,596,449 - 12,870,853 (-)NCBIChiLan1.0ChiLan1.0
COL22A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27155,964,534 - 156,290,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18131,493,244 - 131,819,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08135,241,159 - 135,567,550 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18138,338,835 - 138,664,444 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8138,347,432 - 138,633,084 (-)EnsemblpanPan2panpan1.1
COL22A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11333,735,490 - 33,996,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1333,735,656 - 33,996,401 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1333,718,626 - 33,979,031 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01334,116,591 - 34,377,405 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1334,116,738 - 34,377,082 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11333,840,117 - 34,099,779 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01333,929,879 - 34,189,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01334,334,014 - 34,603,326 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Col22a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053034,336,206 - 4,567,942 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647011,786,287 - 11,993,065 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647011,762,312 - 11,994,041 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL22A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl44,069,076 - 4,313,195 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.144,069,045 - 4,313,198 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.243,800,445 - 4,000,044 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL22A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18132,849,109 - 133,176,176 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660396,761,764 - 7,122,904 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col22a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473517,396,471 - 17,627,161 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473517,373,861 - 17,628,167 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Col22a1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11244,625,379 - 244,834,042 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Col22a1
1433 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:65
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000034672
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)796700404111672180Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D7Rat133  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87105,834,292 - 105,834,451 (+)Marker Load Pipeline
mRatBN7.27103,945,484 - 103,945,643 (+)MAPPERmRatBN7.2
Rnor_6.07113,228,220 - 113,228,378NCBIRnor6.0
Rnor_5.07113,165,238 - 113,165,396UniSTSRnor5.0
RGSC_v3.47109,727,000 - 109,727,159RGDRGSC3.4
RGSC_v3.47109,727,001 - 109,727,159UniSTSRGSC3.4
Celera7100,362,683 - 100,362,841UniSTS
RGSC_v3.17109,761,231 - 109,761,389RGD
RH 3.4 Map7717.6UniSTS
RH 3.4 Map7717.6RGD
RH 2.0 Map7604.3RGD
SHRSP x BN Map760.18RGD
Cytogenetic Map7q34UniSTS
AW532112  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27103,731,430 - 103,731,616 (+)MAPPERmRatBN7.2
Rnor_6.07113,015,383 - 113,015,568NCBIRnor6.0
Rnor_5.07112,952,600 - 112,952,785UniSTSRnor5.0
RGSC_v3.47109,509,635 - 109,509,820UniSTSRGSC3.4
Celera7100,148,555 - 100,148,740UniSTS
RH 3.4 Map7719.1UniSTS
Cytogenetic Map7q34UniSTS
AW534465  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27103,730,968 - 103,731,153 (+)MAPPERmRatBN7.2
Rnor_6.07113,014,921 - 113,015,105NCBIRnor6.0
Rnor_5.07112,952,138 - 112,952,322UniSTSRnor5.0
RGSC_v3.47109,509,173 - 109,509,357UniSTSRGSC3.4
Celera7100,148,093 - 100,148,277UniSTS
RH 3.4 Map7719.2UniSTS
Cytogenetic Map7q34UniSTS
AU049204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27103,902,424 - 103,902,615 (+)MAPPERmRatBN7.2
Rnor_6.07113,185,112 - 113,185,300NCBIRnor6.0
Rnor_5.07113,122,130 - 113,122,318UniSTSRnor5.0
RGSC_v3.47109,683,933 - 109,684,121UniSTSRGSC3.4
Celera7100,318,984 - 100,319,172UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 163 75 74 43 30 43 6 263 129 11 136 67 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000034672   ⟹   ENSRNOP00000029936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7105,619,757 - 105,856,960 (-)Ensembl
mRatBN7.2 Ensembl7103,731,037 - 103,968,462 (-)Ensembl
Rnor_6.0 Ensembl7113,015,747 - 113,228,439 (-)Ensembl
RefSeq Acc Id: XM_039080218   ⟹   XP_038936146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,619,776 - 105,857,246 (-)NCBI
mRatBN7.27103,730,939 - 103,968,452 (-)NCBI
RefSeq Acc Id: XM_039080219   ⟹   XP_038936147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,684,549 - 105,857,244 (-)NCBI
mRatBN7.27103,796,663 - 103,968,452 (-)NCBI
RefSeq Acc Id: XM_039080220   ⟹   XP_038936148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,619,776 - 105,776,943 (-)NCBI
mRatBN7.27103,730,939 - 103,888,128 (-)NCBI
RefSeq Acc Id: XM_063264443   ⟹   XP_063120513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,619,776 - 105,857,246 (-)NCBI
RefSeq Acc Id: XM_063264444   ⟹   XP_063120514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,624,555 - 105,857,246 (-)NCBI
RefSeq Acc Id: XM_063264445   ⟹   XP_063120515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,675,960 - 105,857,245 (-)NCBI
RefSeq Acc Id: XM_063264447   ⟹   XP_063120517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,681,107 - 105,857,245 (-)NCBI
RefSeq Acc Id: XM_063264448   ⟹   XP_063120518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,690,686 - 105,857,245 (-)NCBI
RefSeq Acc Id: XR_010053430
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87105,690,625 - 105,857,245 (-)NCBI
Ensembl Acc Id: ENSRNOP00000029936   ⟸   ENSRNOT00000034672
RefSeq Acc Id: XP_038936146   ⟸   XM_039080218
- Peptide Label: isoform X1
- UniProtKB: F1M897 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936148   ⟸   XM_039080220
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038936147   ⟸   XM_039080219
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063120513   ⟸   XM_063264443
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063120514   ⟸   XM_063264444
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063120515   ⟸   XM_063264445
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063120517   ⟸   XM_063264447
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063120518   ⟸   XM_063264448
- Peptide Label: isoform X7
Protein Domains
VWFA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309081 AgrOrtholog
BioCyc Gene G2FUF-33073 BioCyc
Ensembl Genes ENSRNOG00000024824 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034672 ENTREZGENE
  ENSRNOT00000034672.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Collagen_superfamily UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  TSPN-like_N UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene 315071 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/TrEMBL
  COLLAGEN ALPHA-3(IX) CHAIN PRECURSOR UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PhenoGen Col22a1 PhenoGen
PRINTS VWFADOMAIN UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024824 RatGTEx
SMART TSPN UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP ConA_like_lec_gl UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt F1M897 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-27 Col22a1  collagen type XXII alpha 1 chain  Col22a1  collagen, type XXII, alpha 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Col22a1  collagen, type XXII, alpha 1  Col22a1_predicted  procollagen, type XXII, alpha 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Col22a1_predicted  procollagen, type XXII, alpha 1 (predicted)    collagen, type XXII, alpha 1 (predicted)  Name updated 1299863 APPROVED
2005-01-12 Col22a1_predicted  collagen, type XXII, alpha 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED