Ngef (neuronal guanine nucleotide exchange factor) - Rat Genome Database

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Gene: Ngef (neuronal guanine nucleotide exchange factor) Rattus norvegicus
Analyze
Symbol: Ngef
Name: neuronal guanine nucleotide exchange factor
RGD ID: 1309055
Description: Predicted to enable ephrin receptor binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in ephrin receptor signaling pathway; regulation of actin cytoskeleton organization; and regulation of synapse organization. Is active in postsynapse. Orthologous to human NGEF (neuronal guanine nucleotide exchange factor); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH (+)-schisandrin B; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Besh3; brain-enriched SH3-domain protein Besh3; eph-interacting exchange protein; ephexin-1; LOC360451
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,594,823 - 95,692,381 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl995,594,823 - 95,692,251 (-)EnsemblGRCr8
mRatBN7.2988,146,956 - 88,244,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,146,956 - 88,244,914 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx996,571,300 - 96,604,706 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,707,380 - 101,740,785 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09100,075,202 - 100,108,621 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,569,286 - 94,601,852 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,569,286 - 94,601,852 (-)Ensemblrn6Rnor6.0
Rnor_5.0994,290,729 - 94,323,295 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4986,294,206 - 86,327,765 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera985,556,597 - 85,590,171 (-)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amosite asbestos  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Bufotalin  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
carmustine  (EXP)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clothianidin  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
daunorubicin  (ISO)
DDE  (ISO)
dibenz[a,h]anthracene  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
fonofos  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methotrexate  (EXP)
methylmercury chloride  (ISO)
okadaic acid  (ISO)
p-toluidine  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
parathion  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenformin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propanal  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sotorasib  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
tioguanine  (EXP)
titanium dioxide  (ISO)
trametinib  (ISO)
tributylstannane  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cdk5 regulates EphA4-mediated dendritic spine retraction through an ephexin1-dependent mechanism. Fu WY, etal., Nat Neurosci. 2007 Jan;10(1):67-76. Epub 2006 Dec 3.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10777665   PMID:11336673   PMID:15057822   PMID:15489334   PMID:15848799   PMID:20949525   PMID:22871113  


Genomics

Comparative Map Data
Ngef
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,594,823 - 95,692,381 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl995,594,823 - 95,692,251 (-)EnsemblGRCr8
mRatBN7.2988,146,956 - 88,244,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,146,956 - 88,244,914 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx996,571,300 - 96,604,706 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,707,380 - 101,740,785 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09100,075,202 - 100,108,621 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,569,286 - 94,601,852 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,569,286 - 94,601,852 (-)Ensemblrn6Rnor6.0
Rnor_5.0994,290,729 - 94,323,295 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4986,294,206 - 86,327,765 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera985,556,597 - 85,590,171 (-)NCBICelera
Cytogenetic Map9q35NCBI
NGEF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382232,878,701 - 233,013,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2232,878,686 - 233,013,263 (-)Ensemblhg38GRCh38
GRCh372233,743,411 - 233,877,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,451,655 - 233,586,182 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2227,507,672 - 227,643,202 (-)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2225,592,253 - 225,726,431 (-)NCBIHuRef
CHM1_12233,749,324 - 233,883,758 (-)NCBICHM1_1
T2T-CHM13v2.02233,365,384 - 233,500,670 (-)NCBIT2T-CHM13v2.0
Ngef
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,404,551 - 87,501,661 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,404,556 - 87,501,592 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38187,476,829 - 87,573,870 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,476,834 - 87,573,870 (-)Ensemblmm10GRCm38
MGSCv37189,373,404 - 89,470,445 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36189,308,005 - 89,341,517 (-)NCBIMGSCv36mm8
Celera190,442,498 - 90,539,911 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map144.42NCBI
Ngef
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554533,082,628 - 3,186,039 (+)Ensembl
ChiLan1.0NW_0049554533,082,826 - 3,186,039 (+)NCBIChiLan1.0ChiLan1.0
NGEF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213135,484,267 - 135,527,795 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B135,499,232 - 135,542,753 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B120,110,441 - 120,153,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B239,027,286 - 239,155,874 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B239,027,286 - 239,155,874 (-)EnsemblpanPan2panpan1.1
NGEF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,473,422 - 44,547,838 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,474,174 - 44,547,872 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2544,969,850 - 45,009,071 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02544,733,359 - 44,772,804 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2544,731,905 - 44,837,771 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12544,658,432 - 44,697,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02544,504,534 - 44,543,977 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02544,659,743 - 44,699,019 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ngef
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303186,657,675 - 186,689,323 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365254,220,385 - 4,282,065 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365254,250,389 - 4,282,041 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NGEF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,332,718 - 133,460,166 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115133,332,715 - 133,460,161 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215147,333,684 - 147,429,402 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NGEF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110118,911,019 - 118,959,259 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604080,548,560 - 80,597,571 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ngef
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248435,557,839 - 5,648,871 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248435,558,053 - 5,648,869 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ngef
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14159,601,397 - 159,698,108 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ngef
880 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:317
Count of miRNA genes:198
Interacting mature miRNAs:221
Transcripts:ENSRNOT00000022485
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 63 160 91 90 59 54 59 6 313 150 11 135 80 92 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000022485   ⟹   ENSRNOP00000022485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,594,823 - 95,628,247 (-)Ensembl
mRatBN7.2 Ensembl988,146,956 - 88,180,387 (-)Ensembl
Rnor_6.0 Ensembl994,569,286 - 94,601,852 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097143   ⟹   ENSRNOP00000081178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,594,823 - 95,692,251 (-)Ensembl
mRatBN7.2 Ensembl988,146,956 - 88,244,914 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111267   ⟹   ENSRNOP00000091148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,595,552 - 95,628,247 (-)Ensembl
mRatBN7.2 Ensembl988,146,956 - 88,180,387 (-)Ensembl
RefSeq Acc Id: NM_001136241   ⟹   NP_001129713
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,594,823 - 95,628,247 (-)NCBI
mRatBN7.2988,146,956 - 88,180,387 (-)NCBI
Rnor_6.0994,569,286 - 94,601,852 (-)NCBI
Rnor_5.0994,290,729 - 94,323,295 (-)NCBI
RGSC_v3.4986,294,206 - 86,327,765 (-)RGD
Celera985,556,597 - 85,590,171 (-)RGD
Sequence:
RefSeq Acc Id: XM_039083015   ⟹   XP_038938943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,594,825 - 95,692,381 (-)NCBI
mRatBN7.2988,146,956 - 88,244,454 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001129713 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938943 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78722 (Get FASTA)   NCBI Sequence Viewer  
  AAH91122 (Get FASTA)   NCBI Sequence Viewer  
  EDL75642 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022485
  ENSRNOP00000081178
GenBank Protein Q5BKC9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001129713   ⟸   NM_001136241
- UniProtKB: G3V856 (UniProtKB/TrEMBL),   A6JWN4 (UniProtKB/TrEMBL),   A0A8I6ADY5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022485   ⟸   ENSRNOT00000022485
RefSeq Acc Id: XP_038938943   ⟸   XM_039083015
- Peptide Label: isoform X1
- UniProtKB: Q5BKC9 (UniProtKB/Swiss-Prot),   A0A8I5ZSE2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091148   ⟸   ENSRNOT00000111267
Ensembl Acc Id: ENSRNOP00000081178   ⟸   ENSRNOT00000097143
Protein Domains
DH   PH   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BKC9-F1-model_v2 AlphaFold Q5BKC9 1-701 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696836
Promoter ID:EPDNEW_R7361
Type:single initiation site
Name:Ngef_1
Description:neuronal guanine nucleotide exchange factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0994,601,900 - 94,601,960EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309055 AgrOrtholog
BioCyc Gene G2FUF-26840 BioCyc
Ensembl Genes ENSRNOG00000016653 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022485 ENTREZGENE
  ENSRNOT00000097143 ENTREZGENE
Gene3D-CATH 1.20.900.10 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
  SH3 Domains UniProtKB/Swiss-Prot
InterPro DBL_dom_sf UniProtKB/Swiss-Prot
  DH-domain UniProtKB/Swiss-Prot
  Ephexin-1_SH3 UniProtKB/Swiss-Prot
  Ephexin-like UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  PH_ephexin UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
  SOS1_NGEF_PH UniProtKB/Swiss-Prot
NCBI Gene 246217 ENTREZGENE
PANTHER EPHEXIN-1 UniProtKB/Swiss-Prot
  GUANINE NUCLEOTIDE EXCHANGE FACTOR UniProtKB/Swiss-Prot
Pfam RhoGEF UniProtKB/Swiss-Prot
  SH3_1 UniProtKB/Swiss-Prot
  SOS1_NGEF_PH UniProtKB/Swiss-Prot
PhenoGen Ngef PhenoGen
PROSITE DH_2 UniProtKB/Swiss-Prot
  PH_DOMAIN UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016653 RatGTEx
SMART RhoGEF UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
  SM00233 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF48065 UniProtKB/Swiss-Prot
  SSF50044 UniProtKB/Swiss-Prot
UniProt A0A8I5ZSE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADY5 ENTREZGENE, UniProtKB/TrEMBL
  A6JWN4 ENTREZGENE, UniProtKB/TrEMBL
  G3V856 ENTREZGENE, UniProtKB/TrEMBL
  NGEF_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6AZ62_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-12-05 Ngef  neuronal guanine nucleotide exchange factor  Ngef_predicted  neuronal guanine nucleotide exchange factor (predicted)  Symbol and Name updated 1299863 APPROVED
2006-12-05 Ngef_predicted  neuronal guanine nucleotide exchange factor (predicted)  Besh3_retired    Data merged from RGD:628687 737654 APPROVED
2006-12-05 Besh3_retired    Besh3  brain-enriched SH3-domain protein Besh3  Symbol and Name updated 1299863 APPROVED
2005-01-12 Ngef_predicted  neuronal guanine nucleotide exchange factor (predicted)      Symbol and Name status set to approved 70820 APPROVED
2003-02-27 Besh3  brain-enriched SH3-domain protein Besh3      Symbol and Name status set to provisional 70820 PROVISIONAL