Snrnp48 (small nuclear ribonucleoprotein U11/U12 subunit 48) - Rat Genome Database

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Gene: Snrnp48 (small nuclear ribonucleoprotein U11/U12 subunit 48) Rattus norvegicus
Analyze
Symbol: Snrnp48
Name: small nuclear ribonucleoprotein U11/U12 subunit 48
RGD ID: 1309020
Description: Predicted to enable zinc ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291060; RGD1309020; similar to RIKEN cDNA 6530403A03; small nuclear ribonucleoprotein 48 (U11/U12); small nuclear ribonucleoprotein 48k (U11/U12); U11/U12 small nuclear ribonucleoprotein 48 kDa protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81726,801,818 - 26,821,605 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1726,780,344 - 26,821,592 (-)EnsemblGRCr8
mRatBN7.21726,596,266 - 26,616,058 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,596,275 - 26,616,040 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1726,454,374 - 26,474,288 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,057,965 - 28,077,873 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01726,402,639 - 26,422,467 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01727,243,732 - 27,279,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1727,243,781 - 27,279,260 (-)Ensemblrn6Rnor6.0
Rnor_5.01729,158,965 - 29,194,327 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41732,820,173 - 32,840,752 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1726,230,361 - 26,250,165 (-)NCBICelera
RGSC_v3.11732,823,012 - 32,843,576 (-)NCBI
Cytogenetic Map17p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA)
nucleoplasm  (IBA,IEA,ISO)
U12-type spliceosomal complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15146077  


Genomics

Comparative Map Data
Snrnp48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81726,801,818 - 26,821,605 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1726,780,344 - 26,821,592 (-)EnsemblGRCr8
mRatBN7.21726,596,266 - 26,616,058 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,596,275 - 26,616,040 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1726,454,374 - 26,474,288 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,057,965 - 28,077,873 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01726,402,639 - 26,422,467 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01727,243,732 - 27,279,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1727,243,781 - 27,279,260 (-)Ensemblrn6Rnor6.0
Rnor_5.01729,158,965 - 29,194,327 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41732,820,173 - 32,840,752 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1726,230,361 - 26,250,165 (-)NCBICelera
RGSC_v3.11732,823,012 - 32,843,576 (-)NCBI
Cytogenetic Map17p12NCBI
SNRNP48
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3867,590,198 - 7,611,967 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl67,590,189 - 7,611,967 (+)Ensemblhg38GRCh38
GRCh3767,590,431 - 7,612,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3667,535,431 - 7,557,199 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3467,535,430 - 7,557,090NCBI
Celera68,820,198 - 8,841,965 (+)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef67,467,904 - 7,489,633 (+)NCBIHuRef
CHM1_167,592,592 - 7,614,360 (+)NCBICHM1_1
T2T-CHM13v2.067,459,234 - 7,481,028 (+)NCBIT2T-CHM13v2.0
Snrnp48
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391338,388,880 - 38,411,639 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1338,388,914 - 38,411,641 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381338,204,914 - 38,227,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1338,204,938 - 38,227,665 (+)Ensemblmm10GRCm38
MGSCv371338,296,808 - 38,319,532 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361338,212,405 - 38,235,129 (+)NCBIMGSCv36mm8
Celera1339,319,749 - 39,342,492 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1318.04NCBI
Snrnp48
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554656,336,209 - 6,353,569 (-)Ensembl
ChiLan1.0NW_0049554656,339,362 - 6,353,563 (-)NCBIChiLan1.0ChiLan1.0
SNRNP48
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2522,229,964 - 22,253,928 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1618,226,844 - 18,250,700 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v067,430,029 - 7,451,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.167,712,986 - 7,734,669 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl67,712,986 - 7,734,669 (+)EnsemblpanPan2panpan1.1
SNRNP48
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,529,115 - 7,546,483 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,529,159 - 7,545,620 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha357,532,684 - 7,550,530 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0357,612,043 - 7,629,839 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,611,891 - 7,629,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,465,089 - 7,482,892 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,490,744 - 7,508,567 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,823,390 - 8,841,241 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snrnp48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494616,739,162 - 16,756,195 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365345,007,360 - 5,025,272 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365345,007,362 - 5,025,187 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRNP48
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl74,919,351 - 4,936,036 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.174,919,343 - 4,940,359 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.275,024,693 - 5,040,424 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP48
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11764,588,401 - 64,607,323 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1764,586,891 - 64,607,286 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660447,544,993 - 7,565,286 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrnp48
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475618,017,432 - 18,032,861 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475618,018,442 - 18,032,773 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Snrnp48
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11457,251,974 - 57,271,517 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Snrnp48
103 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:19
Count of miRNA genes:17
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000018508
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171553702528637951Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018508   ⟹   ENSRNOP00000018508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1726,801,588 - 26,821,592 (-)Ensembl
mRatBN7.2 Ensembl1726,596,275 - 26,616,026 (-)Ensembl
Rnor_6.0 Ensembl1727,243,781 - 27,279,260 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110730   ⟹   ENSRNOP00000085198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1726,805,867 - 26,821,592 (-)Ensembl
mRatBN7.2 Ensembl1726,598,684 - 26,616,040 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000145911   ⟹   ENSRNOP00000110712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1726,780,344 - 26,821,592 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146692   ⟹   ENSRNOP00000102731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1726,805,600 - 26,821,592 (-)Ensembl
RefSeq Acc Id: NM_001106107   ⟹   NP_001099577
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81726,801,819 - 26,821,592 (-)NCBI
mRatBN7.21726,596,267 - 26,616,040 (-)NCBI
Rnor_6.01727,243,780 - 27,279,250 (-)NCBI
Rnor_5.01729,158,965 - 29,194,327 (-)NCBI
RGSC_v3.41732,820,173 - 32,840,752 (-)RGD
Celera1726,230,361 - 26,250,165 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253787   ⟹   XP_006253849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81726,801,818 - 26,821,602 (-)NCBI
mRatBN7.21726,598,772 - 26,616,056 (-)NCBI
Rnor_6.01727,246,628 - 27,279,271 (-)NCBI
Rnor_5.01729,158,965 - 29,194,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253788   ⟹   XP_006253850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81726,801,818 - 26,821,603 (-)NCBI
mRatBN7.21726,596,266 - 26,616,057 (-)NCBI
Rnor_6.01727,243,732 - 27,279,271 (-)NCBI
Rnor_5.01729,158,965 - 29,194,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095479   ⟹   XP_038951407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81726,801,818 - 26,821,603 (-)NCBI
mRatBN7.21726,596,266 - 26,616,057 (-)NCBI
RefSeq Acc Id: XM_063276160   ⟹   XP_063132230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81726,810,320 - 26,821,605 (-)NCBI
RefSeq Acc Id: NP_001099577   ⟸   NM_001106107
- UniProtKB: A6J7A8 (UniProtKB/TrEMBL),   A0A8I6A3E2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253850   ⟸   XM_006253788
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006253849   ⟸   XM_006253787
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000018508   ⟸   ENSRNOT00000018508
RefSeq Acc Id: XP_038951407   ⟸   XM_039095479
- Peptide Label: isoform X2
- UniProtKB: D3ZJA5 (UniProtKB/TrEMBL),   A6J7A9 (UniProtKB/TrEMBL),   A0A8I6A3E2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085198   ⟸   ENSRNOT00000110730
RefSeq Acc Id: XP_063132230   ⟸   XM_063276160
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000102731   ⟸   ENSRNOT00000146692
Ensembl Acc Id: ENSRNOP00000110712   ⟸   ENSRNOT00000145911
Protein Domains
CHHC U11-48K-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJA5-F1-model_v2 AlphaFold D3ZJA5 1-337 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700394
Promoter ID:EPDNEW_R10916
Type:multiple initiation site
Name:Snrnp48_1
Description:small nuclear ribonucleoprotein U11/U12 subunit 48
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01727,279,247 - 27,279,307EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309020 AgrOrtholog
BioCyc Gene G2FUF-9684 BioCyc
Ensembl Genes ENSRNOG00000013756 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018508 ENTREZGENE
  ENSRNOT00000018508.8 UniProtKB/TrEMBL
  ENSRNOT00000110730 ENTREZGENE
  ENSRNOT00000110730.2 UniProtKB/TrEMBL
  ENSRNOT00000145911 ENTREZGENE
  ENSRNOT00000145911.1 UniProtKB/TrEMBL
  ENSRNOT00000146692.1 UniProtKB/TrEMBL
InterPro TRM13/UPF0224_CHHC_Znf_dom UniProtKB/TrEMBL
  UPF0224_FAM112_RNA_Proc UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:291060 UniProtKB/TrEMBL
NCBI Gene 291060 ENTREZGENE
PANTHER PTHR21402:SF10 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam UPF0224 UniProtKB/TrEMBL
PhenoGen Snrnp48 PhenoGen
PROSITE ZF_CHHC_U11_48K UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013756 RatGTEx
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6A3E2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LNS5_RAT UniProtKB/TrEMBL
  A0ABK0M5K2_RAT UniProtKB/TrEMBL
  A6J7A8 ENTREZGENE, UniProtKB/TrEMBL
  A6J7A9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJA5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-22 Snrnp48  small nuclear ribonucleoprotein U11/U12 subunit 48  Snrnp48  small nuclear ribonucleoprotein 48 (U11/U12)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-12 Snrnp48  small nuclear ribonucleoprotein 48 (U11/U12)  Snrnp48  small nuclear ribonucleoprotein 48k (U11/U12)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-12 Snrnp48  small nuclear ribonucleoprotein 48k (U11/U12)  RGD1309020  similar to RIKEN cDNA 6530403A03  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309020  similar to RIKEN cDNA 6530403A03  RGD1309020_predicted  similar to RIKEN cDNA 6530403A03 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309020_predicted  similar to RIKEN cDNA 6530403A03 (predicted)  LOC291060_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291060_predicted  similar to RIKEN cDNA 6530403A03 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL