Eif3b (eukaryotic translation initiation factor 3, subunit B) - Rat Genome Database

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Gene: Eif3b (eukaryotic translation initiation factor 3, subunit B) Rattus norvegicus
Analyze
Symbol: Eif3b
Name: eukaryotic translation initiation factor 3, subunit B
RGD ID: 1309018
Description: Predicted to enable RNA binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in several processes, including IRES-dependent viral translational initiation; translational initiation; and viral translational termination-reinitiation. Predicted to be located in cytoplasmic stress granule. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Predicted to be active in synapse. Orthologous to human EIF3B (eukaryotic translation initiation factor 3 subunit B); PARTICIPATES IN translation initiation pathway; RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eIF-3-eta; Eif3s9; eukaryotic translation initiation factor 3 subunit 9; eukaryotic translation initiation factor 3 subunit B; eukaryotic translation initiation factor 3, subunit 9 (eta); LOC288516; MGC112720
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,310,308 - 19,334,768 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1219,310,311 - 19,334,939 (-)EnsemblGRCr8
mRatBN7.21214,196,403 - 14,220,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1215,005,307 - 15,029,761 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,628,804 - 15,653,258 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,655,518 - 14,679,974 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,285,730 - 16,310,190 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,285,733 - 16,310,190 (-)Ensemblrn6Rnor6.0
Rnor_5.01218,278,834 - 18,303,294 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41214,666,974 - 14,692,130 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1215,956,056 - 15,980,516 (-)NCBICelera
RGSC_v3.11214,647,578 - 14,722,030 (-)NCBI
Cytogenetic Map12q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
benzatropine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
cocaine  (EXP)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
Monobutylphthalate  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
putrescine  (EXP)
quercetin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
spermidine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
theophylline  (ISO)
thioacetamide  (EXP)
thiophenes  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8995410   PMID:9573242   PMID:12477932   PMID:15489334   PMID:16452087   PMID:16641100   PMID:17322308   PMID:17581632   PMID:18599441   PMID:20458337   PMID:21347434   PMID:24003236  
PMID:25002582   PMID:25849773   PMID:27462815   PMID:30053369  


Genomics

Comparative Map Data
Eif3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,310,308 - 19,334,768 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1219,310,311 - 19,334,939 (-)EnsemblGRCr8
mRatBN7.21214,196,403 - 14,220,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1215,005,307 - 15,029,761 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,628,804 - 15,653,258 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,655,518 - 14,679,974 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,285,730 - 16,310,190 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,285,733 - 16,310,190 (-)Ensemblrn6Rnor6.0
Rnor_5.01218,278,834 - 18,303,294 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41214,666,974 - 14,692,130 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1215,956,056 - 15,980,516 (-)NCBICelera
RGSC_v3.11214,647,578 - 14,722,030 (-)NCBI
Cytogenetic Map12q11NCBI
EIF3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,354,086 - 2,380,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,354,086 - 2,380,747 (+)Ensemblhg38GRCh38
GRCh3772,393,721 - 2,420,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,361,000 - 2,386,906 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3472,167,741 - 2,193,616NCBI
Celera72,363,928 - 2,389,774 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,313,949 - 2,339,345 (+)NCBIHuRef
CHM1_172,394,083 - 2,419,909 (+)NCBICHM1_1
T2T-CHM13v2.072,467,574 - 2,494,152 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,442,541 - 2,468,274 (+)NCBI
Eif3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,405,060 - 140,429,113 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,405,083 - 140,429,115 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385140,419,305 - 140,443,358 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,419,328 - 140,443,360 (+)Ensemblmm10GRCm38
MGSCv375140,895,259 - 140,919,312 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365140,671,779 - 140,695,832 (+)NCBIMGSCv36mm8
Celera5137,477,208 - 137,501,576 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.97NCBI
Eif3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,917,389 - 12,941,126 (-)Ensembl
ChiLan1.0NW_00495546012,918,349 - 12,941,150 (-)NCBIChiLan1.0ChiLan1.0
EIF3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,316,023 - 7,342,717 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,640,803 - 55,668,632 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,619,460 - 2,646,182 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,718,582 - 2,743,944 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl72,718,582 - 2,742,695 (+)EnsemblpanPan2panpan1.1
EIF3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,780,318 - 14,802,938 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,781,215 - 14,803,883 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha616,242,639 - 16,265,270 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0614,906,371 - 14,929,004 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl614,907,264 - 14,929,069 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1614,709,937 - 14,732,572 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0614,638,275 - 14,660,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0614,924,356 - 14,946,923 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Eif3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,929,948 - 142,953,382 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493682398,056 - 121,482 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493682398,056 - 121,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,645,706 - 1,666,091 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.131,645,462 - 1,666,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EIF3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12819,220,649 - 19,247,134 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2819,222,328 - 19,245,969 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660902,498,569 - 2,524,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,559,940 - 30,583,862 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474030,561,240 - 30,583,213 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Eif3b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11612,755,739 - 12,779,051 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Eif3b
325 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:53
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000060444
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
RH128231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21214,196,496 - 14,196,693 (+)MAPPERmRatBN7.2
Rnor_6.01216,285,824 - 16,286,020NCBIRnor6.0
Rnor_5.01218,278,928 - 18,279,124UniSTSRnor5.0
RGSC_v3.41214,667,068 - 14,667,264UniSTSRGSC3.4
Celera1215,956,150 - 15,956,346UniSTS
RH 3.4 Map12236.0UniSTS
Cytogenetic Map12q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060444   ⟹   ENSRNOP00000057188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1219,310,311 - 19,334,939 (-)Ensembl
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)Ensembl
Rnor_6.0 Ensembl1216,285,733 - 16,310,190 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099724   ⟹   ENSRNOP00000097491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1219,310,311 - 19,334,768 (-)Ensembl
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)Ensembl
RefSeq Acc Id: NM_001031640   ⟹   NP_001026810
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,310,308 - 19,334,768 (-)NCBI
mRatBN7.21214,196,403 - 14,220,865 (-)NCBI
Rnor_6.01216,285,730 - 16,310,190 (-)NCBI
Rnor_5.01218,278,834 - 18,303,294 (-)NCBI
RGSC_v3.41214,666,974 - 14,692,130 (-)RGD
Celera1215,956,056 - 15,980,516 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001026810 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98728 (Get FASTA)   NCBI Sequence Viewer  
  EDL89734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000057188
  ENSRNOP00000057188.1
GenBank Protein Q4G061 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001026810   ⟸   NM_001031640
- UniProtKB: Q4G061 (UniProtKB/Swiss-Prot),   A6K1S6 (UniProtKB/TrEMBL),   A0A8I6B5U9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057188   ⟸   ENSRNOT00000060444
Ensembl Acc Id: ENSRNOP00000097491   ⟸   ENSRNOT00000099724
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4G061-F1-model_v2 AlphaFold Q4G061 1-797 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698455
Promoter ID:EPDNEW_R8980
Type:multiple initiation site
Name:Eif3b_1
Description:eukaryotic translation initiation factor 3, subunit B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01216,310,209 - 16,310,269EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309018 AgrOrtholog
BioCyc Gene G2FUF-19920 BioCyc
Ensembl Genes ENSRNOG00000001253 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000060444 ENTREZGENE
  ENSRNOT00000060444.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
  3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7381504 IMAGE-MGC_LOAD
InterPro EIF3B UniProtKB/Swiss-Prot
  eIF3B_RRM UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  TIF_beta_prop-like UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:288516 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112720 IMAGE-MGC_LOAD
NCBI Gene 288516 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B UniProtKB/Swiss-Prot
  PTHR14068 UniProtKB/Swiss-Prot
Pfam eIF2A UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Eif3b PhenoGen
PIRSF eIF3b UniProtKB/Swiss-Prot
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001253 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
  Tricorn protease domain 2 UniProtKB/Swiss-Prot
UniProt A0A8I6B5U9 ENTREZGENE, UniProtKB/TrEMBL
  A6K1S6 ENTREZGENE, UniProtKB/TrEMBL
  EIF3B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Eif3b  eukaryotic translation initiation factor 3, subunit B  Eif3s9  eukaryotic translation initiation factor 3, subunit 9 (eta)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Eif3s9  eukaryotic translation initiation factor 3, subunit 9 (eta)  Eif3s9_predicted  eukaryotic translation initiation factor 3, subunit 9 (eta) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Eif3s9_predicted  eukaryotic translation initiation factor 3, subunit 9 (eta) (predicted)      Symbol and Name status set to approved 70820 APPROVED