Zdhhc19 (zDHHC palmitoyltransferase 19) - Rat Genome Database

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Pathways
Gene: Zdhhc19 (zDHHC palmitoyltransferase 19) Rattus norvegicus
Analyze
Symbol: Zdhhc19
Name: zDHHC palmitoyltransferase 19 (Ensembl:zinc finger DHHC-type palmitoyltransferase 19)
RGD ID: 1309014
Description: Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in positive regulation of aggrephagy and protein targeting to membrane. Predicted to act upstream of or within aggrephagy and protein targeting to vacuole involved in autophagy. Predicted to be located in Golgi membrane; perinucleolar compartment; and plasma membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC19 (zinc finger DHHC-type palmitoyltransferase 19); INTERACTS WITH bisphenol A; dibutyl phthalate; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC288045; membrane-associated DHHC19 zinc finger protein; MGC156468; palmitoyltransferase ZDHHC19; probable palmitoyltransferase ZDHHC19; RGD1560310; zinc finger DHHC-type palmitoyltransferase 19; zinc finger, DHHC domain containing 19; zinc finger, DHHC-type containing 19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81181,782,899 - 81,794,105 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1181,782,903 - 81,794,008 (-)EnsemblGRCr8
mRatBN7.21168,277,847 - 68,289,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,277,848 - 68,288,954 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1177,114,893 - 77,125,993 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,779,264 - 69,790,498 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01168,804,008 - 68,815,111 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,490,346 - 71,522,959 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,511,715 - 71,523,267 (-)Ensemblrn6Rnor6.0
Rnor_5.01174,596,365 - 74,607,670 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41170,093,702 - 70,105,297 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1167,710,629 - 67,721,664 (-)NCBICelera
RGSC_v3.11170,151,290 - 70,152,622 (-)NCBI
Cytogenetic Map11q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16647879   PMID:20074548  


Genomics

Comparative Map Data
Zdhhc19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81181,782,899 - 81,794,105 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1181,782,903 - 81,794,008 (-)EnsemblGRCr8
mRatBN7.21168,277,847 - 68,289,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,277,848 - 68,288,954 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1177,114,893 - 77,125,993 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,779,264 - 69,790,498 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01168,804,008 - 68,815,111 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,490,346 - 71,522,959 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,511,715 - 71,523,267 (-)Ensemblrn6Rnor6.0
Rnor_5.01174,596,365 - 74,607,670 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41170,093,702 - 70,105,297 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1167,710,629 - 67,721,664 (-)NCBICelera
RGSC_v3.11170,151,290 - 70,152,622 (-)NCBI
Cytogenetic Map11q22NCBI
ZDHHC19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,197,452 - 196,211,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,197,452 - 196,211,437 (-)Ensemblhg38GRCh38
GRCh373195,924,323 - 195,938,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363197,408,720 - 197,422,697 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343197,412,634 - 197,426,610NCBI
Celera3194,504,929 - 194,518,767 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3193,224,055 - 193,238,141 (-)NCBIHuRef
CHM1_13195,895,258 - 195,909,130 (-)NCBICHM1_1
T2T-CHM13v2.03198,917,010 - 198,930,875 (-)NCBIT2T-CHM13v2.0
Zdhhc19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391632,315,059 - 32,326,032 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1632,315,083 - 32,380,784 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381632,496,241 - 32,507,214 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1632,496,265 - 32,561,966 (+)Ensemblmm10GRCm38
MGSCv371632,496,367 - 32,507,300 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361632,416,028 - 32,426,961 (+)NCBIMGSCv36mm8
Celera1632,978,956 - 32,990,189 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1622.76NCBI
Zdhhc19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542012,432,279 - 12,442,249 (-)Ensembl
ChiLan1.0NW_00495542012,432,342 - 12,442,411 (-)NCBIChiLan1.0ChiLan1.0
ZDHHC19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22194,061,884 - 194,075,871 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13194,066,599 - 194,080,578 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03193,537,735 - 193,551,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13203,485,139 - 203,499,031 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,486,005 - 203,498,915 (-)EnsemblpanPan2panpan1.1
ZDHHC19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13329,332,947 - 29,335,942 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3329,332,959 - 29,336,531 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3329,349,643 - 29,360,097 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03329,559,340 - 29,569,886 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3329,559,287 - 29,569,795 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13329,321,996 - 29,356,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03329,399,761 - 29,410,316 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03329,998,746 - 30,033,332 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101977244
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602125,041,020 - 125,060,330 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936784748,381 - 833,841 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13133,875,309 - 133,885,763 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113133,873,072 - 133,886,202 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213143,313,255 - 143,331,419 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11590,974,291 - 90,989,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1590,974,703 - 90,989,006 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604164,816,002 - 64,830,466 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473061,362,941 - 61,370,514 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473061,357,276 - 61,405,048 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zdhhc19
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1417,307,622 - 17,318,774 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zdhhc19
432 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:103
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000033026
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
RH138375  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81181,782,924 - 81,783,591 (+)Marker Load Pipeline
mRatBN7.21168,277,868 - 68,278,535 (+)MAPPERmRatBN7.2
Rnor_6.01171,511,866 - 71,512,532NCBIRnor6.0
Rnor_5.01174,596,387 - 74,597,053UniSTSRnor5.0
RGSC_v3.41170,093,724 - 70,094,390UniSTSRGSC3.4
Celera1167,710,651 - 67,711,317UniSTS
RH 3.4 Map11403.9UniSTS
Cytogenetic Map11q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 10 30 96 73 72 42 29 42 6 189 81 1 76 49 46 30 6 6

Sequence


Ensembl Acc Id: ENSRNOT00000033026   ⟹   ENSRNOP00000038846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1181,782,903 - 81,794,008 (-)Ensembl
mRatBN7.2 Ensembl1168,277,848 - 68,288,954 (-)Ensembl
Rnor_6.0 Ensembl1171,511,715 - 71,523,267 (-)Ensembl
RefSeq Acc Id: NM_001039259   ⟹   NP_001034348
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81181,782,903 - 81,794,008 (-)NCBI
mRatBN7.21168,277,847 - 68,288,953 (-)NCBI
Rnor_6.01171,511,844 - 71,522,945 (-)NCBI
Rnor_5.01174,596,365 - 74,607,670 (-)NCBI
RGSC_v3.41170,093,702 - 70,105,297 (-)RGD
Celera1167,710,629 - 67,721,664 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248447   ⟹   XP_006248509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81181,782,899 - 81,794,105 (-)NCBI
mRatBN7.21168,277,847 - 68,289,110 (-)NCBI
Rnor_6.01171,511,844 - 71,522,959 (-)NCBI
Rnor_5.01174,596,365 - 74,607,670 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088116   ⟹   XP_038944044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81181,783,637 - 81,794,033 (-)NCBI
mRatBN7.21168,278,581 - 68,289,099 (-)NCBI
RefSeq Acc Id: XM_039088117   ⟹   XP_038944045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81181,782,899 - 81,791,398 (-)NCBI
mRatBN7.21168,277,847 - 68,286,332 (-)NCBI
RefSeq Acc Id: XM_063270375   ⟹   XP_063126445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81181,784,067 - 81,794,033 (-)NCBI
RefSeq Acc Id: XM_063270376   ⟹   XP_063126446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81181,782,899 - 81,793,754 (-)NCBI
RefSeq Acc Id: XR_005491000
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81181,783,708 - 81,794,032 (-)NCBI
mRatBN7.21168,278,652 - 68,289,099 (-)NCBI
RefSeq Acc Id: NP_001034348   ⟸   NM_001039259
- UniProtKB: Q2TGJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248509   ⟸   XM_006248447
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000038846   ⟸   ENSRNOT00000033026
RefSeq Acc Id: XP_038944045   ⟸   XM_039088117
- Peptide Label: isoform X4
- UniProtKB: A6IRQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944044   ⟸   XM_039088116
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126446   ⟸   XM_063270376
- Peptide Label: isoform X4
- UniProtKB: A6IRQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126445   ⟸   XM_063270375
- Peptide Label: isoform X3
Protein Domains
Palmitoyltransferase DHHC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2TGJ0-F1-model_v2 AlphaFold Q2TGJ0 1-359 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309014 AgrOrtholog
BioCyc Gene G2FUF-21098 BioCyc
Ensembl Genes ENSRNOG00000025055 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033026 ENTREZGENE
  ENSRNOT00000033026.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7111596 IMAGE-MGC_LOAD
InterPro PFA4/ZDH16/20/ERF2-like UniProtKB/TrEMBL
  Znf_DHHC UniProtKB/TrEMBL
KEGG Report rno:288045 UniProtKB/TrEMBL
MGC_CLONE MGC:156468 IMAGE-MGC_LOAD
NCBI Gene 288045 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC19 UniProtKB/TrEMBL
  ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam zf-DHHC UniProtKB/TrEMBL
PhenoGen Zdhhc19 PhenoGen
PROSITE DHHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025055 RatGTEx
UniProt A6IRQ7 ENTREZGENE, UniProtKB/TrEMBL
  Q2TGJ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Zdhhc19  zDHHC palmitoyltransferase 19  Zdhhc19  zinc finger DHHC-type palmitoyltransferase 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-11-11 Zdhhc19  zinc finger DHHC-type palmitoyltransferase 19  Zdhhc19  zinc finger, DHHC-type containing 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-17 Zdhhc19  zinc finger, DHHC-type containing 19  Zdhhc19  zinc finger, DHHC domain containing 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 Zdhhc19  zinc finger, DHHC domain containing 19  Zdhhc19_predicted  zinc finger, DHHC domain containing 19 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Zdhhc19_predicted  zinc finger, DHHC domain containing 19 (predicted)      Symbol and Name status set to approved 70820 APPROVED