Ppfia1 (PPFI scaffold protein A1) - Rat Genome Database

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Gene: Ppfia1 (PPFI scaffold protein A1) Rattus norvegicus
Analyze
Symbol: Ppfia1
Name: PPFI scaffold protein A1 (Ensembl:PTPRF interacting protein alpha 1)
RGD ID: 1309009
Description: Involved in regulation of postsynaptic membrane neurotransmitter receptor levels. Located in axon and dendrite. Part of protein-containing complex. Is active in Schaffer collateral - CA1 synapse and spine apparatus. Orthologous to human PPFIA1 (PTPRF interacting protein alpha 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: liprin-alpha-1; liprin-alpha-1-like; LOC103689951; LOC293645; protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1; protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1; PTPRF interacting protein alpha 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81209,070,608 - 209,147,740 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1209,070,608 - 209,150,265 (-)EnsemblGRCr8
mRatBN7.21199,641,277 - 199,718,371 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1199,641,277 - 199,717,277 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1208,024,622 - 208,100,539 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,108,770 - 215,184,563 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01207,782,948 - 207,858,744 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,644,259 - 217,721,285 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,644,224 - 217,721,376 (-)Ensemblrn6Rnor6.0
Rnor_5.01222,200,653 - 222,216,178 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01224,501,043 - 224,578,551 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41204,907,328 - 204,984,408 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1197,200,811 - 197,276,774 (-)NCBICelera
RGSC_v3.11205,061,640 - 205,139,124 (-)NCBI
Cytogenetic Map1q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Liprinalpha1 degradation by calcium/calmodulin-dependent protein kinase II regulates LAR receptor tyrosine phosphatase distribution and dendrite development. Hoogenraad CC, etal., Dev Cell. 2007 Apr;12(4):587-602. doi: 10.1016/j.devcel.2007.02.006.
4. Interaction between liprin-alpha and GIT1 is required for AMPA receptor targeting. Ko J, etal., J Neurosci. 2003 Mar 1;23(5):1667-77.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Association of the kinesin motor KIF1A with the multimodular protein liprin-alpha. Shin H, etal., J Biol Chem. 2003 Mar 28;278(13):11393-401. Epub 2003 Jan 8.
9. Interaction between GRIP and liprin-alpha/SYD2 is required for AMPA receptor targeting. Wyszynski M, etal., Neuron 2002 Mar 28;34(1):39-52.
Additional References at PubMed
PMID:15750591   PMID:19534762   PMID:21157931   PMID:21683737   PMID:22266902   PMID:28760951   PMID:30021165  


Genomics

Comparative Map Data
Ppfia1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81209,070,608 - 209,147,740 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1209,070,608 - 209,150,265 (-)EnsemblGRCr8
mRatBN7.21199,641,277 - 199,718,371 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1199,641,277 - 199,717,277 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1208,024,622 - 208,100,539 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,108,770 - 215,184,563 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01207,782,948 - 207,858,744 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,644,259 - 217,721,285 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,644,224 - 217,721,376 (-)Ensemblrn6Rnor6.0
Rnor_5.01222,200,653 - 222,216,178 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01224,501,043 - 224,578,551 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41204,907,328 - 204,984,408 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1197,200,811 - 197,276,774 (-)NCBICelera
RGSC_v3.11205,061,640 - 205,139,124 (-)NCBI
Cytogenetic Map1q42NCBI
PPFIA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381170,270,690 - 70,384,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1170,270,655 - 70,385,312 (+)Ensemblhg38GRCh38
GRCh371170,116,796 - 70,230,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361169,794,471 - 69,908,150 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341169,794,470 - 69,902,146NCBI
Celera1167,376,164 - 67,491,698 (+)NCBICelera
Cytogenetic Map11q13.3NCBI
HuRef1166,374,574 - 66,491,659 (+)NCBIHuRef
CHM1_11169,999,952 - 70,114,102 (+)NCBICHM1_1
T2T-CHM13v2.01170,285,642 - 70,404,818 (+)NCBIT2T-CHM13v2.0
Ppfia1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397144,030,492 - 144,107,497 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7144,030,495 - 144,107,466 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm387144,476,755 - 144,553,762 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7144,476,758 - 144,553,729 (-)Ensemblmm10GRCm38
MGSCv377151,662,883 - 151,739,591 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367144,286,155 - 144,363,119 (-)NCBIMGSCv36mm8
Celera7144,239,654 - 144,316,313 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.85NCBI
Ppfia1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542215,892,566 - 15,998,786 (-)Ensembl
ChiLan1.0NW_00495542215,892,945 - 15,998,786 (-)NCBIChiLan1.0ChiLan1.0
PPFIA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2971,237,861 - 71,355,690 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11172,282,135 - 72,399,879 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01165,368,262 - 65,486,023 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11168,656,692 - 68,770,842 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1168,657,638 - 68,769,464 (+)EnsemblpanPan2panpan1.1
PPFIA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11847,974,109 - 48,060,331 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1847,975,441 - 48,058,377 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1846,584,324 - 46,669,897 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01848,651,631 - 48,737,237 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1848,651,616 - 48,735,924 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11848,098,783 - 48,184,312 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01847,684,611 - 47,770,122 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01848,430,559 - 48,516,177 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppfia1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049474,081,185 - 4,167,361 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936599523,507 - 610,065 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936599523,534 - 609,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPFIA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl23,073,241 - 3,164,235 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.123,073,236 - 3,165,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.221,493,699 - 1,537,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPFIA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114,184,592 - 4,302,677 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14,181,681 - 4,301,206 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038101,453,538 - 101,571,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppfia1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476716,905,115 - 17,023,118 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476716,905,196 - 17,024,407 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppfia1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v125,170,493 - 5,248,788 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ppfia1
455 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:130
Interacting mature miRNAs:156
Transcripts:ENSRNOT00000039677
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1177339686222339686Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1181059071226059071Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1181059071226059071Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1182039247227039247Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1183564652228564652Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1193964073238964073Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1160573753210707719Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1181059071226059071Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1160573753210707719Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1165278545210278545Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1181059071226059071Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1168063662213063662Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1193400541238400541Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1182535316227535316Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1181059071226059071Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1181059071226059071Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1203300512229359342Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1180739993225739993Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1191190115223964326Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1172718770228180370Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1192995199237995199Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1201464383246464383Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1185979875230979875Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1197807365233480676Rat
6480773Gluco64Glucose level QTL 645.09blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811209116975Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753210707719Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1193400541238400541Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1202851915223964440Rat
6480783Insul19Insulin level QTL 194.33blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1203300512213659238Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1165707719210707719Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1173363824227535316Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1191260175236260175Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2325727Pia41Pristane induced arthritis QTL 41joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1188241285233241285Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1160573753210707719Rat

Markers in Region
RH134390  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21199,641,378 - 199,641,571 (+)MAPPERmRatBN7.2
Rnor_6.01215,297,047 - 215,297,239NCBIRnor6.0
Rnor_6.01217,644,361 - 217,644,553NCBIRnor6.0
Rnor_5.01224,501,145 - 224,501,337UniSTSRnor5.0
Rnor_5.01222,200,750 - 222,200,942UniSTSRnor5.0
RGSC_v3.41204,907,430 - 204,907,622UniSTSRGSC3.4
Celera1197,200,913 - 197,201,105UniSTS
RH 3.4 Map11560.9UniSTS
Cytogenetic Map1q42UniSTS
AA800886  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21199,641,385 - 199,641,573 (+)MAPPERmRatBN7.2
Rnor_6.01217,644,368 - 217,644,555NCBIRnor6.0
Rnor_6.01215,297,054 - 215,297,241NCBIRnor6.0
Rnor_5.01224,501,152 - 224,501,339UniSTSRnor5.0
Rnor_5.01222,200,757 - 222,200,944UniSTSRnor5.0
RGSC_v3.41204,907,437 - 204,907,624UniSTSRGSC3.4
Celera1197,200,920 - 197,201,107UniSTS
RH 3.4 Map11549.3UniSTS
Cytogenetic Map1q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000039677   ⟹   ENSRNOP00000032648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1209,070,608 - 209,146,569 (-)Ensembl
mRatBN7.2 Ensembl1199,641,277 - 199,717,277 (-)Ensembl
Rnor_6.0 Ensembl1217,644,259 - 217,720,221 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000054858   ⟹   ENSRNOP00000051741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,298,161 - 215,310,013 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078810   ⟹   ENSRNOP00000072693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1209,072,943 - 209,146,569 (-)Ensembl
mRatBN7.2 Ensembl1199,645,375 - 199,717,247 (-)Ensembl
Rnor_6.0 Ensembl1217,644,224 - 217,720,414 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092748   ⟹   ENSRNOP00000075947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1209,072,943 - 209,147,036 (-)Ensembl
mRatBN7.2 Ensembl1199,641,606 - 199,717,247 (-)Ensembl
Rnor_6.0 Ensembl1217,644,486 - 217,721,376 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092824   ⟹   ENSRNOP00000076045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1217,644,270 - 217,677,997 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092939   ⟹   ENSRNOP00000075999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1209,070,608 - 209,146,569 (-)Ensembl
mRatBN7.2 Ensembl1199,641,606 - 199,717,277 (-)Ensembl
Rnor_6.0 Ensembl1217,644,486 - 217,720,221 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1217,684,686 - 217,685,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1217,659,523 - 217,663,354 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154042   ⟹   ENSRNOP00000103682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1209,072,943 - 209,150,265 (-)Ensembl
RefSeq Acc Id: NM_001106320   ⟹   NP_001099790
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,608 - 209,146,569 (-)NCBI
mRatBN7.21199,641,277 - 199,717,247 (-)NCBI
Rnor_6.01217,644,259 - 217,720,221 (-)NCBI
Rnor_5.01224,501,043 - 224,578,551 (-)NCBI
RGSC_v3.41204,907,328 - 204,984,408 (-)RGD
Celera1197,200,811 - 197,276,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230715   ⟹   XP_006230777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
Rnor_6.01217,644,264 - 217,721,285 (-)NCBI
Rnor_5.01224,501,043 - 224,578,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230720   ⟹   XP_006230782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
Rnor_6.01217,644,264 - 217,721,285 (-)NCBI
Rnor_5.01224,501,043 - 224,578,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230721   ⟹   XP_006230783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
Rnor_6.01217,644,264 - 217,721,285 (-)NCBI
Rnor_5.01224,501,043 - 224,578,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230722   ⟹   XP_006230784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
Rnor_6.01217,644,264 - 217,721,285 (-)NCBI
Rnor_5.01224,501,043 - 224,578,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230723   ⟹   XP_006230785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,290 - 199,718,371 (-)NCBI
Rnor_6.01217,644,270 - 217,721,285 (-)NCBI
Rnor_5.01224,501,043 - 224,578,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589010   ⟹   XP_017444499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
Rnor_6.01217,644,264 - 217,721,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589012   ⟹   XP_017444501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
Rnor_6.01217,644,264 - 217,721,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108121   ⟹   XP_038964049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
RefSeq Acc Id: XM_039108123   ⟹   XP_038964051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
RefSeq Acc Id: XM_039108128   ⟹   XP_038964056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
RefSeq Acc Id: XM_039108131   ⟹   XP_038964059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
RefSeq Acc Id: XM_039108139   ⟹   XP_038964067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
mRatBN7.21199,641,282 - 199,718,371 (-)NCBI
RefSeq Acc Id: XM_063286692   ⟹   XP_063142762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
RefSeq Acc Id: XM_063286708   ⟹   XP_063142778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
RefSeq Acc Id: XM_063286711   ⟹   XP_063142781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
RefSeq Acc Id: XM_063286712   ⟹   XP_063142782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
RefSeq Acc Id: XM_063286716   ⟹   XP_063142786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81209,070,613 - 209,147,740 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099790 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230777 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230782 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230783 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230784 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230785 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444499 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964049 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964056 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964067 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142762 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142781 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142782 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142786 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM12239 (Get FASTA)   NCBI Sequence Viewer  
  EDM12240 (Get FASTA)   NCBI Sequence Viewer  
  EDM12241 (Get FASTA)   NCBI Sequence Viewer  
  EDM12242 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032648
  ENSRNOP00000032648.4
  ENSRNOP00000072693
  ENSRNOP00000072693.3
  ENSRNOP00000075947
  ENSRNOP00000075947.3
  ENSRNOP00000075999
  ENSRNOP00000075999.2
  ENSRNOP00000103682.1
RefSeq Acc Id: NP_001099790   ⟸   NM_001106320
- UniProtKB: D3ZZ81 (UniProtKB/TrEMBL),   A0A0G2K3L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230785   ⟸   XM_006230723
- Peptide Label: isoform X16
- UniProtKB: D3ZZ81 (UniProtKB/TrEMBL),   A0A0G2K3L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230784   ⟸   XM_006230722
- Peptide Label: isoform X15
- UniProtKB: A0A0G2K3L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230782   ⟸   XM_006230720
- Peptide Label: isoform X8
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230783   ⟸   XM_006230721
- Peptide Label: isoform X10
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230777   ⟸   XM_006230715
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GWS0 (UniProtKB/TrEMBL),   A0A1B0GWM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444501   ⟸   XM_017589012
- Peptide Label: isoform X17
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444499   ⟸   XM_017589010
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075947   ⟸   ENSRNOT00000092748
Ensembl Acc Id: ENSRNOP00000076045   ⟸   ENSRNOT00000092824
Ensembl Acc Id: ENSRNOP00000075999   ⟸   ENSRNOT00000092939
Ensembl Acc Id: ENSRNOP00000072693   ⟸   ENSRNOT00000078810
Ensembl Acc Id: ENSRNOP00000032648   ⟸   ENSRNOT00000039677
RefSeq Acc Id: XP_038964059   ⟸   XM_039108131
- Peptide Label: isoform X7
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964051   ⟸   XM_039108123
- Peptide Label: isoform X3
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964067   ⟸   XM_039108139
- Peptide Label: isoform X9
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964056   ⟸   XM_039108128
- Peptide Label: isoform X6
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964049   ⟸   XM_039108121
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000051741   ⟸   ENSRNOT00000054858
RefSeq Acc Id: XP_063142778   ⟸   XM_063286708
- Peptide Label: isoform X11
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142786   ⟸   XM_063286716
- Peptide Label: isoform X14
- UniProtKB: A0A0G2K3L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142781   ⟸   XM_063286711
- Peptide Label: isoform X12
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142762   ⟸   XM_063286692
- Peptide Label: isoform X5
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142782   ⟸   XM_063286712
- Peptide Label: isoform X13
- UniProtKB: A0A1B0GWM2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103682   ⟸   ENSRNOT00000154042
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRB1-F1-model_v2 AlphaFold D3ZRB1 1-246 view protein structure
AF-A0A1B0GWS0-F1-model_v2 AlphaFold A0A1B0GWS0 1-1266 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690591
Promoter ID:EPDNEW_R1109
Type:initiation region
Name:Ppfia1_1
Description:PTPRF interacting protein alpha 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01217,721,376 - 217,721,436EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309009 AgrOrtholog
BioCyc Gene G2FUF-56850 BioCyc
Ensembl Genes ENSRNOG00000020857 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000048049 Ensembl
Ensembl Transcript ENSRNOT00000039677 ENTREZGENE
  ENSRNOT00000039677.6 UniProtKB/TrEMBL
  ENSRNOT00000078810 ENTREZGENE
  ENSRNOT00000078810.3 UniProtKB/TrEMBL
  ENSRNOT00000092748 ENTREZGENE
  ENSRNOT00000092748.3 UniProtKB/TrEMBL
  ENSRNOT00000092939 ENTREZGENE
  ENSRNOT00000092939.3 UniProtKB/TrEMBL
  ENSRNOT00000154042.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro Liprin UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_1 UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_2 UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM_type UniProtKB/TrEMBL
KEGG Report rno:293645 UniProtKB/TrEMBL
NCBI Gene 293645 ENTREZGENE
PANTHER PTHR12587 UniProtKB/TrEMBL
  PTHR12587:SF15 UniProtKB/TrEMBL
Pfam LIP-1 UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PhenoGen Ppfia1 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020857 RatGTEx
  ENSRNOG00000048049 RatGTEx
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A0A0G2K3L9 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GWM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GWS0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L3F6_RAT UniProtKB/TrEMBL
  D3ZZ81 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Ppfia1  PPFI scaffold protein A1  Ppfia1  PTPRF interacting protein alpha 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-03-09 Ppfia1  PTPRF interacting protein alpha 1  LOC103689951  liprin-alpha-1-like  Data merged from RGD:9445271 737654 PROVISIONAL
2016-02-17 Ppfia1  PTPRF interacting protein alpha 1  Ppfia1  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103689951  liprin-alpha-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-24 Ppfia1  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1  Ppfia1  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ppfia1  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1   Ppfia1_predicted  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ppfia1_predicted  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED