Gpatch2l (G patch domain containing 2-like) - Rat Genome Database

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Gene: Gpatch2l (G patch domain containing 2-like) Rattus norvegicus
Analyze
Symbol: Gpatch2l
Name: G patch domain containing 2-like
RGD ID: 1308907
Description: Predicted to be active in nucleus. Orthologous to human GPATCH2L (G-patch domain containing 2 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G patch domain-containing protein 2-like; hypothetical protein LOC314325; LOC108351277; LOC314325; RGD1308907; similar to FLJ20689; uncharacterized LOC108351277; uncharacterized protein LOC314325
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86111,614,344 - 111,666,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6111,614,416 - 111,666,602 (+)EnsemblGRCr8
mRatBN7.26105,883,383 - 105,935,644 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6105,883,460 - 105,934,888 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6106,053,587 - 106,101,153 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,352,473 - 106,400,045 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06105,722,104 - 105,769,666 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,093,767 - 110,228,943 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,093,819 - 110,227,475 (+)Ensemblrn6Rnor6.0
Rnor_5.06119,518,540 - 119,527,025 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.06119,400,117 - 119,436,183 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46110,354,283 - 110,404,857 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6103,709,800 - 103,760,327 (+)NCBICelera
RGSC_v3.16110,357,809 - 110,409,578 (+)NCBI
Cytogenetic Map6q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Gpatch2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86111,614,344 - 111,666,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6111,614,416 - 111,666,602 (+)EnsemblGRCr8
mRatBN7.26105,883,383 - 105,935,644 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6105,883,460 - 105,934,888 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6106,053,587 - 106,101,153 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,352,473 - 106,400,045 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06105,722,104 - 105,769,666 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,093,767 - 110,228,943 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,093,819 - 110,227,475 (+)Ensemblrn6Rnor6.0
Rnor_5.06119,518,540 - 119,527,025 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.06119,400,117 - 119,436,183 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46110,354,283 - 110,404,857 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6103,709,800 - 103,760,327 (+)NCBICelera
RGSC_v3.16110,357,809 - 110,409,578 (+)NCBI
Cytogenetic Map6q31NCBI
GPATCH2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,151,922 - 76,235,555 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,151,916 - 76,254,342 (+)Ensemblhg38GRCh38
GRCh371476,618,265 - 76,680,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361475,688,012 - 75,738,887 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341475,688,011 - 75,738,886NCBI
Celera1456,656,362 - 56,707,266 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1456,786,734 - 56,837,359 (+)NCBIHuRef
CHM1_11476,556,028 - 76,606,927 (+)NCBICHM1_1
T2T-CHM13v2.01470,361,062 - 70,423,507 (+)NCBIT2T-CHM13v2.0
Gpatch2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,288,569 - 86,341,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,288,632 - 86,338,558 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381286,241,795 - 86,294,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,241,858 - 86,291,784 (+)Ensemblmm10GRCm38
MGSCv371287,582,828 - 87,632,318 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361287,130,981 - 87,180,471 (+)NCBIMGSCv36mm8
Celera1287,702,997 - 87,752,504 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.36NCBI
Gpatch2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438214,706 - 261,686 (+)Ensembl
ChiLan1.0NW_004955438214,882 - 263,937 (+)NCBIChiLan1.0ChiLan1.0
GPATCH2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,240,971 - 77,327,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11476,457,478 - 76,528,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01456,710,528 - 56,776,832 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11475,553,827 - 75,613,381 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1475,554,507 - 75,606,594 (+)EnsemblpanPan2panpan1.1
GPATCH2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,101,267 - 49,157,008 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,101,138 - 49,152,491 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha848,783,617 - 48,839,352 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0849,325,352 - 49,381,100 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,325,391 - 49,381,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1848,997,696 - 49,053,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,019,620 - 49,075,348 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,415,932 - 49,471,712 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gpatch2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,856,662 - 26,915,102 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,153,875 - 5,202,956 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,153,877 - 5,205,515 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPATCH2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,325,569 - 99,375,428 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1799,325,536 - 99,376,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,370,849 - 105,426,505 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPATCH2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12453,401,799 - 53,453,023 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2453,401,822 - 53,452,080 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605341,618,112 - 41,680,046 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpatch2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,516,772 - 25,562,927 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473425,461,801 - 25,562,896 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gpatch2l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17100,332,884 - 100,375,259 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gpatch2l
386 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:301
Count of miRNA genes:198
Interacting mature miRNAs:236
Transcripts:ENSRNOT00000013602
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000013602   ⟹   ENSRNOP00000013604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6111,614,416 - 111,664,543 (+)Ensembl
mRatBN7.2 Ensembl6105,883,468 - 105,934,180 (+)Ensembl
Rnor_6.0 Ensembl6110,093,819 - 110,227,475 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108425   ⟹   ENSRNOP00000089809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6111,614,416 - 111,659,283 (+)Ensembl
mRatBN7.2 Ensembl6105,883,468 - 105,934,180 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114075   ⟹   ENSRNOP00000084168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6111,614,416 - 111,666,601 (+)Ensembl
mRatBN7.2 Ensembl6105,883,460 - 105,934,888 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119252   ⟹   ENSRNOP00000080573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6111,614,427 - 111,666,602 (+)Ensembl
mRatBN7.2 Ensembl6105,883,468 - 105,934,180 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167125   ⟹   ENSRNOP00000111852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6111,614,416 - 111,662,119 (+)Ensembl
RefSeq Acc Id: NM_001134559   ⟹   NP_001128031
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,431 - 111,665,139 (+)NCBI
mRatBN7.26105,883,468 - 105,934,180 (+)NCBI
Rnor_6.06110,093,819 - 110,227,475 (+)NCBI
Rnor_5.06119,400,117 - 119,436,183 (+)NCBI
Rnor_5.06119,518,540 - 119,527,025 (+)NCBI
RGSC_v3.46110,354,283 - 110,404,857 (+)RGD
Celera6103,709,800 - 103,760,327 (+)RGD
Sequence:
RefSeq Acc Id: XM_008764794   ⟹   XP_008763016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,666,603 (+)NCBI
mRatBN7.26105,883,383 - 105,935,644 (+)NCBI
Rnor_6.06110,093,779 - 110,228,943 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112309   ⟹   XP_038968237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,495 - 111,666,603 (+)NCBI
mRatBN7.26105,883,532 - 105,935,644 (+)NCBI
RefSeq Acc Id: XM_039112310   ⟹   XP_038968238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,662,026 (+)NCBI
mRatBN7.26105,883,383 - 105,932,527 (+)NCBI
RefSeq Acc Id: XM_039112311   ⟹   XP_038968239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,666,603 (+)NCBI
mRatBN7.26105,883,383 - 105,935,644 (+)NCBI
RefSeq Acc Id: XM_039112312   ⟹   XP_038968240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,662,026 (+)NCBI
mRatBN7.26105,883,383 - 105,932,527 (+)NCBI
RefSeq Acc Id: XM_063261943   ⟹   XP_063118013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,666,603 (+)NCBI
RefSeq Acc Id: XM_063261944   ⟹   XP_063118014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,640,292 (+)NCBI
RefSeq Acc Id: XR_001838169
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,663,548 (+)NCBI
mRatBN7.26105,883,383 - 105,935,644 (+)NCBI
Rnor_6.06110,093,779 - 110,225,915 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005505526
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86111,614,344 - 111,662,026 (+)NCBI
mRatBN7.26105,883,383 - 105,932,527 (+)NCBI
RefSeq Acc Id: NP_001128031   ⟸   NM_001134559
- UniProtKB: D3ZUP4 (UniProtKB/TrEMBL),   A6JE58 (UniProtKB/TrEMBL),   A0A8I6A8X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763016   ⟸   XM_008764794
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZR09 (UniProtKB/TrEMBL),   A0A8I6A8X2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013604   ⟸   ENSRNOT00000013602
RefSeq Acc Id: XP_038968239   ⟸   XM_039112311
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A8X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968238   ⟸   XM_039112310
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZWN4 (UniProtKB/TrEMBL),   A6JE59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968240   ⟸   XM_039112312
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A8X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968237   ⟸   XM_039112309
- Peptide Label: isoform X1
- UniProtKB: D3ZUP4 (UniProtKB/TrEMBL),   A6JE58 (UniProtKB/TrEMBL),   A0A8I6A8X2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089809   ⟸   ENSRNOT00000108425
Ensembl Acc Id: ENSRNOP00000084168   ⟸   ENSRNOT00000114075
Ensembl Acc Id: ENSRNOP00000080573   ⟸   ENSRNOT00000119252
RefSeq Acc Id: XP_063118013   ⟸   XM_063261943
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A8X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118014   ⟸   XM_063261944
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZWN4 (UniProtKB/TrEMBL),   A6JE59 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111852   ⟸   ENSRNOT00000167125

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUP4-F1-model_v2 AlphaFold D3ZUP4 1-474 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694747
Promoter ID:EPDNEW_R5271
Type:multiple initiation site
Name:Gpatch2l_1
Description:G patch domain containing 2-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06110,093,835 - 110,093,895EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308907 AgrOrtholog
BioCyc Gene G2FUF-36760 BioCyc
Ensembl Genes ENSRNOG00000010227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013602.6 UniProtKB/TrEMBL
  ENSRNOT00000108425.2 UniProtKB/TrEMBL
  ENSRNOT00000114075 ENTREZGENE
  ENSRNOT00000114075.2 UniProtKB/TrEMBL
  ENSRNOT00000119252 ENTREZGENE
  ENSRNOT00000119252.2 UniProtKB/TrEMBL
  ENSRNOT00000167125 ENTREZGENE
  ENSRNOT00000167125.1 UniProtKB/TrEMBL
InterPro Splicing_assoc_domain UniProtKB/TrEMBL
KEGG Report rno:314325 UniProtKB/TrEMBL
NCBI Gene 314325 ENTREZGENE
PANTHER G PATCH DOMAIN CONTAINING PROTEIN 2 UniProtKB/TrEMBL
PhenoGen Gpatch2l PhenoGen
RatGTEx ENSRNOG00000010227 RatGTEx
UniProt A0A8I5ZR09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8X2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LZE3_RAT UniProtKB/TrEMBL
  A6JE58 ENTREZGENE, UniProtKB/TrEMBL
  A6JE59 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUP4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Gpatch2l  G patch domain containing 2-like  LOC108351277  uncharacterized LOC108351277  Data merged from RGD:11505401 737654 PROVISIONAL
2016-08-02 LOC108351277  uncharacterized LOC108351277      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-10-10 Gpatch2l  G patch domain containing 2-like  RGD1308907  similar to FLJ20689  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308907  similar to FLJ20689   RGD1308907_predicted  similar to FLJ20689 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308907_predicted  similar to FLJ20689 (predicted)  LOC314325_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314325_predicted  similar to FLJ20689 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL