Nop56 (NOP56 ribonucleoprotein) - Rat Genome Database

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Gene: Nop56 (NOP56 ribonucleoprotein) Rattus norvegicus
Analyze
Symbol: Nop56
Name: NOP56 ribonucleoprotein
RGD ID: 1308892
Description: Predicted to enable histone methyltransferase binding activity and snoRNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in fibrillar center. Predicted to be part of box C/D methylation guide snoRNP complex; pre-snoRNP complex; and small-subunit processome. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 36. Orthologous to human NOP56 (NOP56 ribonucleoprotein); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362214; MGC116301; Nol5a; NOP56 ribonucleoprotein homolog; NOP56 ribonucleoprotein homolog (yeast); nucleolar protein 56; nucleolar protein 5A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,926,187 - 137,934,971 (+)NCBIGRCr8
mRatBN7.23117,476,963 - 117,481,847 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,477,053 - 117,481,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3121,375,109 - 121,379,896 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03129,970,728 - 129,975,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03127,631,224 - 127,636,012 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03122,803,726 - 122,808,564 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3122,803,772 - 122,808,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,303,444 - 129,308,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43117,887,822 - 117,892,614 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13117,793,394 - 117,798,187 (+)NCBI
Celera3116,293,358 - 116,298,150 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
4-amino-2,6-dinitrotoluene  (EXP)
aconitine  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[ghi]perylene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A5  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (EXP,ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
elemental selenium  (ISO)
ellagic acid  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
glafenine  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
melphalan  (ISO)
menadione  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
sodium fluoride  (ISO)
Soman  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (EXP)
Triptolide  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. Watkins NJ and Bohnsack MT, Wiley Interdiscip Rev RNA. 2012 May-Jun;3(3):397-414. doi: 10.1002/wrna.117. Epub 2011 Nov 7.
Additional References at PubMed
PMID:12477932   PMID:17636026   PMID:19946888   PMID:22658674   PMID:22681889   PMID:24013231   PMID:24174535   PMID:25468996  


Genomics

Comparative Map Data
Nop56
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,926,187 - 137,934,971 (+)NCBIGRCr8
mRatBN7.23117,476,963 - 117,481,847 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,477,053 - 117,481,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3121,375,109 - 121,379,896 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03129,970,728 - 129,975,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03127,631,224 - 127,636,012 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03122,803,726 - 122,808,564 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3122,803,772 - 122,808,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,303,444 - 129,308,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43117,887,822 - 117,892,614 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13117,793,394 - 117,798,187 (+)NCBI
Celera3116,293,358 - 116,298,150 (+)NCBICelera
Cytogenetic Map3q36NCBI
NOP56
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,652,632 - 2,658,393 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,652,593 - 2,658,393 (+)EnsemblGRCh38hg38GRCh38
GRCh37202,633,278 - 2,639,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36202,581,254 - 2,587,039 (+)NCBINCBI36Build 36hg18NCBI36
Build 34202,581,253 - 2,587,038NCBI
Celera202,697,715 - 2,703,502 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,582,394 - 2,588,267 (+)NCBIHuRef
CHM1_1202,633,579 - 2,639,446 (+)NCBICHM1_1
T2T-CHM13v2.0202,683,093 - 2,688,860 (+)NCBIT2T-CHM13v2.0
Nop56
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,112,904 - 130,121,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,116,350 - 130,121,233 (+)EnsemblGRCm39 Ensembl
GRCm382130,274,367 - 130,279,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,274,430 - 130,279,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv372130,100,148 - 130,105,049 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362129,965,900 - 129,970,754 (+)NCBIMGSCv36mm8
Celera2131,498,819 - 131,503,720 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.2NCBI
Nop56
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541513,637,595 - 13,643,938 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541513,637,505 - 13,642,809 (+)NCBIChiLan1.0ChiLan1.0
NOP56
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,641,647 - 3,647,475 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1203,638,472 - 3,644,300 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0202,760,689 - 2,766,596 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1202,523,619 - 2,529,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl202,523,619 - 2,529,509 (+)Ensemblpanpan1.1panPan2
NOP56
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,561,407 - 18,566,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,561,408 - 18,566,719 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2418,390,715 - 18,396,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02419,019,189 - 19,024,580 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,019,190 - 19,024,480 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,575,424 - 18,580,814 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,685,676 - 18,691,066 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,014,775 - 19,020,160 (-)NCBIUU_Cfam_GSD_1.0
Nop56
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,606,726 - 167,612,067 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648516,038,182 - 16,043,357 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648516,038,090 - 16,043,408 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOP56
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,960,102 - 32,965,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,960,099 - 32,965,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21737,441,096 - 37,446,329 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOP56
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,882,070 - 53,887,867 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,882,169 - 53,887,565 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666087299,181 - 305,383 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nop56
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247413,803,169 - 3,808,342 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247413,803,000 - 3,808,439 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nop56
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:50
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000009564
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
RH124665  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23117,480,750 - 117,481,489 (+)MAPPERmRatBN7.2
Rnor_6.03122,807,470 - 122,808,208NCBIRnor6.0
Rnor_5.03129,307,185 - 129,307,923UniSTSRnor5.0
RGSC_v3.43117,891,520 - 117,892,258UniSTSRGSC3.4
Celera3116,297,056 - 116,297,794UniSTS
Cytogenetic Map3q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000009564   ⟹   ENSRNOP00000009563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3117,477,053 - 117,481,841 (+)Ensembl
Rnor_6.0 Ensembl3122,803,772 - 122,808,558 (+)Ensembl
RefSeq Acc Id: NM_001025732   ⟹   NP_001020903
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83137,930,179 - 137,934,971 (+)NCBI
mRatBN7.23117,477,053 - 117,481,845 (+)NCBI
Rnor_6.03122,803,772 - 122,808,564 (+)NCBI
Rnor_5.03129,303,444 - 129,308,279 (+)NCBI
RGSC_v3.43117,887,822 - 117,892,614 (+)RGD
Celera3116,293,358 - 116,298,150 (+)RGD
Sequence:
RefSeq Acc Id: XM_063284165   ⟹   XP_063140235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83137,926,187 - 137,934,968 (+)NCBI
RefSeq Acc Id: XR_352612
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83137,926,187 - 137,934,590 (+)NCBI
mRatBN7.23117,476,963 - 117,481,847 (+)NCBI
Rnor_6.03122,803,726 - 122,808,561 (+)NCBI
Rnor_5.03129,303,444 - 129,308,279 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001020903 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140235 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86568 (Get FASTA)   NCBI Sequence Viewer  
  AAH99149 (Get FASTA)   NCBI Sequence Viewer  
  EDL80179 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009563.4
RefSeq Acc Id: NP_001020903   ⟸   NM_001025732
- UniProtKB: Q4KLK7 (UniProtKB/TrEMBL),   F7FCF9 (UniProtKB/TrEMBL),   Q5RJN5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009563   ⟸   ENSRNOT00000009564
RefSeq Acc Id: XP_063140235   ⟸   XM_063284165
- Peptide Label: isoform X1
Protein Domains
Nop

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLK7-F1-model_v2 AlphaFold Q4KLK7 1-588 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692428
Promoter ID:EPDNEW_R2953
Type:multiple initiation site
Name:Nop56_1
Description:NOP56 ribonucleoprotein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03122,803,800 - 122,803,860EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308892 AgrOrtholog
BioCyc Gene G2FUF-47874 BioCyc
Ensembl Genes ENSRNOG00000007128 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009564.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.246.90 UniProtKB/TrEMBL
  1.10.287.4070 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7125493 IMAGE-MGC_LOAD
  IMAGE:7366316 IMAGE-MGC_LOAD
InterPro Nop56/Nop58 UniProtKB/TrEMBL
  NOP5_N UniProtKB/TrEMBL
  Nop_C UniProtKB/TrEMBL
  Nop_dom_sf UniProtKB/TrEMBL
  NOSIC UniProtKB/TrEMBL
  SnoRNA-bd_dom UniProtKB/TrEMBL
KEGG Report rno:362214 UniProtKB/TrEMBL
MGC_CLONE MGC:105871 IMAGE-MGC_LOAD
  MGC:116301 IMAGE-MGC_LOAD
NCBI Gene 362214 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN 56 UniProtKB/TrEMBL
  PTHR10894 UniProtKB/TrEMBL
Pfam Nop UniProtKB/TrEMBL
  NOP5NT UniProtKB/TrEMBL
PhenoGen Nop56 PhenoGen
PROSITE NOP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007128 RatGTEx
SMART NOSIC UniProtKB/TrEMBL
Superfamily-SCOP SSF89124 UniProtKB/TrEMBL
UniProt F7FCF9 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLK7 ENTREZGENE, UniProtKB/TrEMBL
  Q5RJN5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-18 Nop56  NOP56 ribonucleoprotein  Nop56  NOP56 ribonucleoprotein homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Nop56  NOP56 ribonucleoprotein homolog (yeast)  Nol5a  nucleolar protein 5A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Nol5a  nucleolar protein 5A  Nol5a_predicted  nucleolar protein 5A (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Nol5a_predicted  nucleolar protein 5A (predicted)      Symbol and Name status set to approved 70820 APPROVED