Arpc5l (actin related protein 2/3 complex, subunit 5-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Arpc5l (actin related protein 2/3 complex, subunit 5-like) Rattus norvegicus
Analyze
Symbol: Arpc5l (Ensembl: Arpc5l-ps1)
Name: actin related protein 2/3 complex, subunit 5-like (Ensembl:actin related protein 2/3 complex, subunit 5-like, pseudogene 1)
RGD ID: 1308867
Description: Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to be located in actin cytoskeleton and cytoplasm. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cortical cytoskeleton and glutamatergic synapse. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like); PARTICIPATES IN Fc gamma receptor mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: actin related protein 2/3 complex, subunit 5-like 1; actin-related protein 2/3 complex subunit 5-like protein; ARC16-2; arp2/3 complex 16 kDa subunit 2; Arpc5l1; LOC296710; MGC112865
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Arpc5l-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,169,518 - 43,177,224 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl343,169,462 - 43,177,240 (+)EnsemblGRCr8
GRCr8 Ensembl952,754,287 - 52,756,633 (-)EnsemblGRCr8
mRatBN7.2322,758,710 - 22,767,520 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl322,759,876 - 22,767,538 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx326,228,380 - 26,236,003 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,813,364 - 34,820,987 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,626,072 - 32,633,695 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,301,455 - 23,309,077 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)Ensemblrn6Rnor6.0
Rnor_5.0328,523,281 - 28,530,903 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,798,930 - 18,801,987 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera321,193,183 - 21,200,804 (+)NCBICelera
RGSC_v3.1318,687,517 - 18,698,957 (+)NCBI
Cytogenetic Map3q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
casticin  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
copper(II) sulfate  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
metformin  (ISO)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
nitrates  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
resveratrol  (ISO)
sarin  (EXP)
saxitoxin  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:15489334   PMID:19056867   PMID:20458337   PMID:21423176   PMID:23376485   PMID:24413018  


Genomics

Comparative Map Data
Arpc5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,169,518 - 43,177,224 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl343,169,462 - 43,177,240 (+)EnsemblGRCr8
GRCr8 Ensembl952,754,287 - 52,756,633 (-)EnsemblGRCr8
mRatBN7.2322,758,710 - 22,767,520 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl322,759,876 - 22,767,538 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx326,228,380 - 26,236,003 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,813,364 - 34,820,987 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,626,072 - 32,633,695 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,301,455 - 23,309,077 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)Ensemblrn6Rnor6.0
Rnor_5.0328,523,281 - 28,530,903 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,798,930 - 18,801,987 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera321,193,183 - 21,200,804 (+)NCBICelera
RGSC_v3.1318,687,517 - 18,698,957 (+)NCBI
Cytogenetic Map3q12NCBI
ARPC5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,862,130 - 124,877,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,862,130 - 124,877,733 (+)Ensemblhg38GRCh38
GRCh379127,624,409 - 127,640,012 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,671,305 - 126,679,517 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349124,711,037 - 124,719,249NCBI
Celera998,279,433 - 98,287,649 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,243,876 - 97,252,092 (+)NCBIHuRef
CHM1_19127,780,255 - 127,788,468 (+)NCBICHM1_1
T2T-CHM13v2.09137,060,438 - 137,076,046 (+)NCBIT2T-CHM13v2.0
Arpc5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,895,283 - 38,905,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,895,360 - 38,905,889 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38239,008,066 - 39,015,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,005,348 - 39,015,877 (+)Ensemblmm10GRCm38
MGSCv37238,863,659 - 38,871,392 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36238,830,148 - 38,837,881 (+)NCBIMGSCv36mm8
Celera240,733,885 - 40,741,618 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Arpc5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,360,189 - 3,367,531 (-)Ensembl
ChiLan1.0NW_0049554193,360,189 - 3,367,531 (-)NCBIChiLan1.0ChiLan1.0
ARPC5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,480,948 - 14,489,327 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,483,292 - 14,491,669 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,989,650 - 95,998,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,505,769 - 124,515,396 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,505,769 - 124,515,396 (+)EnsemblpanPan2panpan1.1
ARPC5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,142,001 - 58,149,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,142,389 - 58,149,236 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha957,340,842 - 57,348,123 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0959,062,448 - 59,069,717 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,062,836 - 59,069,659 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,821,454 - 57,828,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,137,063 - 58,144,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,227,991 - 58,235,278 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arpc5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,296,420 - 193,304,836 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,065,338 - 13,073,053 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,064,206 - 13,073,363 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,642,260 - 265,654,018 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11265,645,800 - 265,653,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,468,496 - 299,479,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,268,223 - 13,284,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,268,025 - 13,283,515 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660792,823,995 - 2,832,582 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,322,034 - 10,329,616 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476010,322,034 - 10,333,234 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Arpc5l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1516,756,184 - 16,763,955 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arpc5l
16 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:533
Count of miRNA genes:280
Interacting mature miRNAs:352
Transcripts:ENSRNOT00000019405
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH143512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,767,671 - 22,767,954 (+)MAPPERmRatBN7.2
Rnor_6.0323,309,229 - 23,309,511NCBIRnor6.0
Rnor_5.0328,531,055 - 28,531,337UniSTSRnor5.0
RGSC_v3.4318,802,407 - 18,802,689UniSTSRGSC3.4
Celera321,200,956 - 21,201,238UniSTS
RH 3.4 Map3239.31UniSTS
Cytogenetic Map3q11UniSTS
AI852867  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,767,315 - 22,767,442 (+)MAPPERmRatBN7.2
Rnor_6.0323,308,873 - 23,308,999NCBIRnor6.0
Rnor_5.0328,530,699 - 28,530,825UniSTSRnor5.0
RGSC_v3.4318,802,051 - 18,802,177UniSTSRGSC3.4
Celera321,200,600 - 21,200,726UniSTS
Cytogenetic Map3q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019405   ⟹   ENSRNOP00000019405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl343,169,602 - 43,177,223 (+)Ensembl
mRatBN7.2 Ensembl322,759,900 - 22,767,538 (+)Ensembl
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096562   ⟹   ENSRNOP00000089031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl343,169,462 - 43,177,240 (+)Ensembl
mRatBN7.2 Ensembl322,759,876 - 22,767,517 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112049   ⟹   ENSRNOP00000083929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,754,287 - 52,756,633 (-)Ensembl
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)Ensembl
RefSeq Acc Id: NM_001037767   ⟹   NP_001032856
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,602 - 43,177,224 (+)NCBI
mRatBN7.2322,759,898 - 22,767,520 (+)NCBI
Rnor_6.0323,301,455 - 23,309,077 (+)NCBI
Rnor_5.0328,523,281 - 28,530,903 (+)NCBI
RGSC_v3.4318,798,930 - 18,801,987 (+)RGD
Celera321,193,183 - 21,200,804 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104789   ⟹   XP_038960717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,518 - 43,177,224 (+)NCBI
mRatBN7.2322,758,710 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_039104791   ⟹   XP_038960719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
mRatBN7.2322,760,368 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_039104793   ⟹   XP_038960721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
mRatBN7.2322,760,320 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_039104794   ⟹   XP_038960722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,170,249 - 43,177,224 (+)NCBI
mRatBN7.2322,760,816 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_063283529   ⟹   XP_063139599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
RefSeq Acc Id: XM_063283530   ⟹   XP_063139600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
RefSeq Acc Id: XM_063283531   ⟹   XP_063139601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
RefSeq Acc Id: NP_001032856   ⟸   NM_001037767
- UniProtKB: Q4KM42 (UniProtKB/Swiss-Prot),   A1L108 (UniProtKB/Swiss-Prot),   A0A8L2QA00 (UniProtKB/TrEMBL),   A6JEW0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019405   ⟸   ENSRNOT00000019405
RefSeq Acc Id: XP_038960717   ⟸   XM_039104789
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960721   ⟸   XM_039104793
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960719   ⟸   XM_039104791
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960722   ⟸   XM_039104794
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000089031   ⟸   ENSRNOT00000096562
Ensembl Acc Id: ENSRNOP00000083929   ⟸   ENSRNOT00000112049
RefSeq Acc Id: XP_063139599   ⟸   XM_063283529
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139600   ⟸   XM_063283530
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139601   ⟸   XM_063283531
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L108-F1-model_v2 AlphaFold A1L108 1-153 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692056
Promoter ID:EPDNEW_R2581
Type:initiation region
Name:Arpc5l_1
Description:actin related protein 2/3 complex, subunit 5-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0323,301,429 - 23,301,489EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308867 AgrOrtholog
BioCyc Gene G2FUF-49885 BioCyc
Ensembl Genes ENSRNOG00000014317 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000067388 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019405 ENTREZGENE
  ENSRNOT00000096562.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112049.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.190 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7367835 IMAGE-MGC_LOAD
InterPro ARPC5 UniProtKB/Swiss-Prot
  ARPC5_sf UniProtKB/Swiss-Prot
KEGG Report rno:296710 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156477 IMAGE-MGC_LOAD
NCBI Gene 296710 ENTREZGENE
PANTHER PTHR12644 UniProtKB/Swiss-Prot
Pfam P16-Arc UniProtKB/Swiss-Prot
PhenoGen Arpc5l PhenoGen
PIRSF p16-ARC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014317 RatGTEx
  ENSRNOG00000067388 RatGTEx
Superfamily-SCOP SSF69103 UniProtKB/Swiss-Prot
UniProt A0A8L2QA00 ENTREZGENE, UniProtKB/TrEMBL
  A1L108 ENTREZGENE
  A6JEW0 ENTREZGENE, UniProtKB/TrEMBL
  ARP5L_RAT UniProtKB/Swiss-Prot
  Q4KM42 ENTREZGENE
UniProt Secondary Q4KM42 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-08 Arpc5l  actin related protein 2/3 complex, subunit 5-like  Arpc5l1  actin related protein 2/3 complex, subunit 5-like 1  Name and Symbol changed 629549 APPROVED
2022-03-22 Arpc5l1  actin related protein 2/3 complex, subunit 5-like 1  Arpc5l  actin related protein 2/3 complex, subunit 5-like  Name and Symbol changed 629549 APPROVED
2005-12-06 Arpc5l  actin related protein 2/3 complex, subunit 5-like  Arpc5l_predicted  actin related protein 2/3 complex, subunit 5-like (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Arpc5l_predicted  actin related protein 2/3 complex, subunit 5-like (predicted)      Symbol and Name status set to approved 70820 APPROVED