ARPC5L (actin related protein 2/3 complex subunit 5 like) - Rat Genome Database

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Gene: ARPC5L (actin related protein 2/3 complex subunit 5 like) Canis lupus familiaris
Analyze
Symbol: ARPC5L
Name: actin related protein 2/3 complex subunit 5 like
RGD ID: 12294740
Description: ENCODES a protein that exhibits actin filament binding (inferred); INVOLVED IN Arp2/3 complex-mediated actin nucleation (inferred); cell migration (inferred); regulation of actin filament polymerization (inferred); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin-related protein 2/3 complex subunit 5-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,142,001 - 58,149,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,142,389 - 58,149,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,340,842 - 57,348,123 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,062,448 - 59,069,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,062,836 - 59,069,659 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,821,454 - 57,828,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,137,063 - 58,144,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,227,991 - 58,235,278 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARPC5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,142,001 - 58,149,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,142,389 - 58,149,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,340,842 - 57,348,123 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,062,448 - 59,069,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,062,836 - 59,069,659 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,821,454 - 57,828,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,137,063 - 58,144,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,227,991 - 58,235,278 (-)NCBIUU_Cfam_GSD_1.0
ARPC5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,862,130 - 124,877,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,862,130 - 124,877,733 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,624,409 - 127,640,012 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,671,305 - 126,679,517 (+)NCBINCBI36Build 36hg18NCBI36
Build 349124,711,037 - 124,719,249NCBI
Celera998,279,433 - 98,287,649 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,243,876 - 97,252,092 (+)NCBIHuRef
CHM1_19127,780,255 - 127,788,468 (+)NCBICHM1_1
T2T-CHM13v2.09137,060,438 - 137,076,046 (+)NCBIT2T-CHM13v2.0
Arpc5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,895,283 - 38,905,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,895,360 - 38,905,889 (+)EnsemblGRCm39 Ensembl
GRCm38239,008,066 - 39,015,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,005,348 - 39,015,877 (+)EnsemblGRCm38mm10GRCm38
MGSCv37238,863,659 - 38,871,392 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,830,148 - 38,837,881 (+)NCBIMGSCv36mm8
Celera240,733,885 - 40,741,618 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Arpc5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,169,518 - 43,177,224 (+)NCBIGRCr8
mRatBN7.2322,758,710 - 22,767,520 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl322,759,876 - 22,767,538 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx326,228,380 - 26,236,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,813,364 - 34,820,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,626,072 - 32,633,695 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,301,455 - 23,309,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,523,281 - 28,530,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,798,930 - 18,801,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,687,517 - 18,698,957 (+)NCBI
Celera321,193,183 - 21,200,804 (+)NCBICelera
Cytogenetic Map3q12NCBI
Arpc5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,360,189 - 3,367,531 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,360,189 - 3,367,531 (-)NCBIChiLan1.0ChiLan1.0
ARPC5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,480,948 - 14,489,327 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,483,292 - 14,491,669 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,989,650 - 95,998,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,505,769 - 124,515,396 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,505,769 - 124,515,396 (+)Ensemblpanpan1.1panPan2
Arpc5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,296,420 - 193,304,836 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,065,338 - 13,073,053 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,064,206 - 13,073,363 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,642,260 - 265,654,018 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,645,800 - 265,653,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,468,496 - 299,479,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,268,223 - 13,284,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,268,025 - 13,283,515 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,823,995 - 2,832,582 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,322,034 - 10,329,616 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,322,034 - 10,333,234 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARPC5L
44 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000043402   ⟹   ENSCAFP00000036468
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl958,142,389 - 58,149,236 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845017979   ⟹   ENSCAFP00845014007
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl959,062,836 - 59,069,659 (-)Ensembl
RefSeq Acc Id: XM_038487449   ⟹   XP_038343377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1957,821,454 - 57,828,735 (-)NCBI
RefSeq Acc Id: XM_038549385   ⟹   XP_038405313
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0958,227,991 - 58,235,278 (-)NCBI
RefSeq Acc Id: XM_038613326   ⟹   XP_038469254
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0958,137,063 - 58,144,338 (-)NCBI
RefSeq Acc Id: XM_038678618   ⟹   XP_038534546
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0959,062,448 - 59,069,717 (-)NCBI
RefSeq Acc Id: XM_858438   ⟹   XP_863531
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1958,142,001 - 58,149,285 (-)NCBI
Dog10K_Boxer_Tasha957,340,842 - 57,348,123 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_863531   ⟸   XM_858438
- UniProtKB: A0A8C0TC90 (UniProtKB/TrEMBL),   A0A8I3RVN9 (UniProtKB/TrEMBL),   A0A8C0KSI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036468   ⟸   ENSCAFT00000043402
RefSeq Acc Id: XP_038343377   ⟸   XM_038487449
RefSeq Acc Id: XP_038469254   ⟸   XM_038613326
RefSeq Acc Id: XP_038534546   ⟸   XM_038678618
- UniProtKB: A0A8C0TC90 (UniProtKB/TrEMBL),   A0A8I3RVN9 (UniProtKB/TrEMBL),   A0A8C0KSI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405313   ⟸   XM_038549385
- UniProtKB: A0A8C0KSI8 (UniProtKB/TrEMBL),   A0A8C0TC90 (UniProtKB/TrEMBL),   A0A8I3RVN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845014007   ⟸   ENSCAFT00845017979

Promoters
RGD ID:13684843
Promoter ID:EPDNEW_C2912
Type:initiation region
Name:ARPC5L_1
Description:actin related protein 2/3 complex subunit 5 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1958,149,236 - 58,149,296EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032451 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030005967 UniProtKB/TrEMBL
  ENSCAFG00040021185 UniProtKB/TrEMBL
  ENSCAFG00845010220 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000043402.3 UniProtKB/TrEMBL
  ENSCAFT00030010939.1 UniProtKB/TrEMBL
  ENSCAFT00040039386.1 UniProtKB/TrEMBL
  ENSCAFT00845017979 ENTREZGENE
  ENSCAFT00845017979.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.190 UniProtKB/TrEMBL
InterPro ARPC5 UniProtKB/TrEMBL
  ARPC5_sf UniProtKB/TrEMBL
KEGG Report cfa:612856 UniProtKB/TrEMBL
NCBI Gene ARPC5L ENTREZGENE
PANTHER PTHR12644 UniProtKB/TrEMBL
  PTHR12644:SF2 UniProtKB/TrEMBL
Pfam P16-Arc UniProtKB/TrEMBL
PIRSF p16-ARC UniProtKB/TrEMBL
Superfamily-SCOP SSF69103 UniProtKB/TrEMBL
UniProt A0A8C0KSI8 ENTREZGENE
  A0A8C0TC90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RVN9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38132 ENTREZGENE