Rnf144b (ring finger protein 144B) - Rat Genome Database

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Gene: Rnf144b (ring finger protein 144B) Rattus norvegicus
Analyze
Symbol: Rnf144b
Name: ring finger protein 144B
RGD ID: 1308856
Description: Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in negative regulation of apoptotic process and ubiquitin-dependent protein catabolic process. Predicted to be located in mitochondrion and organelle membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in mitochondrial membrane. Orthologous to human RNF144B (ring finger protein 144B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase RNF144B; IBR domain containing 2; Ibrdc2; LOC103694052; LOC364681; uncharacterized LOC103694052
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81717,637,564 - 17,786,685 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1717,639,079 - 17,769,037 (-)EnsemblGRCr8
mRatBN7.21717,431,271 - 17,580,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1717,432,786 - 17,562,760 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1717,318,719 - 17,449,207 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01718,922,585 - 19,053,070 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01717,245,836 - 17,376,316 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01717,817,122 - 17,947,777 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1717,817,100 - 17,947,777 (-)Ensemblrn6Rnor6.0
Rnor_5.01719,970,617 - 20,122,575 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41723,483,622 - 23,615,443 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1717,144,717 - 17,274,355 (-)NCBICelera
RGSC_v3.11723,485,693 - 23,531,560 (-)NCBI
Cytogenetic Map17p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
fenofibrate  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gardiquimod  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
indometacin  (ISO)
iron dichloride  (ISO)
isoprenaline  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
melphalan  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (ISO)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
protein kinase inhibitor  (ISO)
prothioconazole  (ISO)
raloxifene  (ISO)
rofecoxib  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12853982   PMID:19028597   PMID:20300062  


Genomics

Comparative Map Data
Rnf144b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81717,637,564 - 17,786,685 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1717,639,079 - 17,769,037 (-)EnsemblGRCr8
mRatBN7.21717,431,271 - 17,580,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1717,432,786 - 17,562,760 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1717,318,719 - 17,449,207 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01718,922,585 - 19,053,070 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01717,245,836 - 17,376,316 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01717,817,122 - 17,947,777 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1717,817,100 - 17,947,777 (-)Ensemblrn6Rnor6.0
Rnor_5.01719,970,617 - 20,122,575 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41723,483,622 - 23,615,443 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1717,144,717 - 17,274,355 (-)NCBICelera
RGSC_v3.11723,485,693 - 23,531,560 (-)NCBI
Cytogenetic Map17p14NCBI
RNF144B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38618,387,350 - 18,468,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl618,387,346 - 18,468,874 (+)Ensemblhg38GRCh38
GRCh37618,387,581 - 18,469,101 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36618,495,573 - 18,576,829 (+)NCBIBuild 36Build 36hg18NCBI36
Celera619,625,477 - 19,706,989 (+)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef618,331,867 - 18,413,407 (+)NCBIHuRef
CHM1_1618,390,078 - 18,471,591 (+)NCBICHM1_1
T2T-CHM13v2.0618,259,855 - 18,340,593 (+)NCBIT2T-CHM13v2.0
Rnf144b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391347,276,196 - 47,401,470 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1347,276,132 - 47,401,467 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381347,122,720 - 47,247,991 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1347,122,656 - 47,247,991 (+)Ensemblmm10GRCm38
MGSCv371347,218,089 - 47,343,360 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361347,133,692 - 47,257,448 (+)NCBIMGSCv36mm8
Celera1348,207,533 - 48,333,429 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.5NCBI
Rnf144b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554837,784,522 - 7,862,917 (-)Ensembl
ChiLan1.0NW_0049554837,784,522 - 7,862,917 (-)NCBIChiLan1.0ChiLan1.0
RNF144B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2532,936,566 - 33,128,516 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1628,921,847 - 29,113,789 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0618,124,935 - 18,316,842 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1618,586,953 - 18,668,676 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl618,586,953 - 18,668,674 (+)EnsemblpanPan2panpan1.1
RNF144B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13517,056,189 - 17,226,254 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3517,150,835 - 17,238,566 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3517,100,525 - 17,174,574 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03517,258,408 - 17,332,411 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3517,258,143 - 17,343,654 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13517,070,630 - 17,144,761 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03517,127,876 - 17,202,139 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03518,459,431 - 18,533,535 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf144b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049467,566,870 - 7,691,146 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365524,083,483 - 4,166,890 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365524,080,675 - 4,165,882 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF144B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl713,946,658 - 14,119,091 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1713,946,101 - 14,119,094 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2714,688,456 - 14,860,472 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF144B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11753,683,645 - 53,866,961 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1753,683,576 - 53,764,106 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604418,500,720 - 18,696,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf144b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247568,214,319 - 8,309,697 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247568,210,829 - 8,409,509 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnf144b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11466,188,620 - 66,242,157 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnf144b
975 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:916
Count of miRNA genes:317
Interacting mature miRNAs:437
Transcripts:ENSRNOT00000036876
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920650523859062Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920650523859062Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171553702528637951Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920650523859062Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat

Markers in Region
D17Got16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21717,548,779 - 17,548,946 (+)MAPPERmRatBN7.2
Rnor_6.01717,933,797 - 17,933,963NCBIRnor6.0
Rnor_5.01720,006,651 - 20,006,817UniSTSRnor5.0
RGSC_v3.41723,601,460 - 23,601,627RGDRGSC3.4
RGSC_v3.41723,601,461 - 23,601,627UniSTSRGSC3.4
Celera1717,260,550 - 17,260,716UniSTS
RGSC_v3.11723,601,460 - 23,601,627RGD
RH 3.4 Map17194.0UniSTS
RH 3.4 Map17194.0RGD
RH 2.0 Map17147.6RGD
Cytogenetic Map17p13UniSTS
RH133238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21717,482,513 - 17,482,693 (+)MAPPERmRatBN7.2
Rnor_6.01717,869,017 - 17,869,196NCBIRnor6.0
Rnor_5.01720,070,607 - 20,070,786UniSTSRnor5.0
RGSC_v3.41723,533,569 - 23,533,748UniSTSRGSC3.4
Celera1717,194,495 - 17,194,674UniSTS
Cytogenetic Map17p13UniSTS
RH127603  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21717,479,779 - 17,479,974 (+)MAPPERmRatBN7.2
Rnor_6.01717,866,283 - 17,866,477NCBIRnor6.0
Rnor_5.01720,073,326 - 20,073,520UniSTSRnor5.0
RGSC_v3.41723,530,835 - 23,531,029UniSTSRGSC3.4
Celera1717,191,761 - 17,191,955UniSTS
RH 3.4 Map17191.9UniSTS
Cytogenetic Map17p13UniSTS
BF412627  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21717,466,067 - 17,466,157 (+)MAPPERmRatBN7.2
Rnor_6.01717,852,572 - 17,852,661NCBIRnor6.0
Rnor_5.01720,087,142 - 20,087,231UniSTSRnor5.0
RGSC_v3.41723,517,124 - 23,517,213UniSTSRGSC3.4
Celera1717,178,054 - 17,178,143UniSTS
RH 3.4 Map17231.3UniSTS
Cytogenetic Map17p13UniSTS
RH141755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21717,484,145 - 17,484,329 (+)MAPPERmRatBN7.2
Rnor_6.01717,870,649 - 17,870,832NCBIRnor6.0
Rnor_5.01720,068,971 - 20,069,154UniSTSRnor5.0
RGSC_v3.41723,535,201 - 23,535,384UniSTSRGSC3.4
Celera1717,196,127 - 17,196,310UniSTS
RH 3.4 Map17192.9UniSTS
Cytogenetic Map17p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 95 212 91 90 59 150 59 6 503 289 23 185 124 138 31 31 31

Sequence


Ensembl Acc Id: ENSRNOT00000036876   ⟹   ENSRNOP00000036422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1717,639,079 - 17,769,037 (-)Ensembl
mRatBN7.2 Ensembl1717,432,786 - 17,562,760 (-)Ensembl
Rnor_6.0 Ensembl1717,818,637 - 17,947,777 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082733   ⟹   ENSRNOP00000069177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1717,817,100 - 17,872,573 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155387   ⟹   ENSRNOP00000112580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1717,639,079 - 17,727,280 (-)Ensembl
RefSeq Acc Id: NM_001108881   ⟹   NP_001102351
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81717,639,079 - 17,769,037 (-)NCBI
mRatBN7.21717,432,786 - 17,562,760 (-)NCBI
Rnor_6.01717,818,637 - 17,947,777 (-)NCBI
Rnor_5.01719,970,617 - 20,122,575 (+)NCBI
RGSC_v3.41723,483,622 - 23,615,443 (-)RGD
Celera1717,144,717 - 17,274,355 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253767   ⟹   XP_006253829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81717,637,564 - 17,692,779 (-)NCBI
mRatBN7.21717,431,271 - 17,486,348 (-)NCBI
Rnor_6.01717,817,122 - 17,872,838 (-)NCBI
Rnor_5.01719,970,617 - 20,122,575 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095970   ⟹   XP_038951898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81717,637,564 - 17,786,685 (-)NCBI
mRatBN7.21717,431,271 - 17,580,687 (-)NCBI
RefSeq Acc Id: NP_001102351   ⟸   NM_001108881
- UniProtKB: D3ZFK0 (UniProtKB/TrEMBL),   A6J6Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253829   ⟸   XM_006253767
- Peptide Label: isoform X1
- UniProtKB: D3ZFK0 (UniProtKB/TrEMBL),   A6J6Z9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069177   ⟸   ENSRNOT00000082733
Ensembl Acc Id: ENSRNOP00000036422   ⟸   ENSRNOT00000036876
RefSeq Acc Id: XP_038951898   ⟸   XM_039095970
- Peptide Label: isoform X1
- UniProtKB: D3ZFK0 (UniProtKB/TrEMBL),   A6J6Z9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112580   ⟸   ENSRNOT00000155387
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFK0-F1-model_v2 AlphaFold D3ZFK0 1-301 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700370
Promoter ID:EPDNEW_R10885
Type:single initiation site
Name:Rnf144b_1
Description:ring finger protein 144B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10886  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01717,872,512 - 17,872,572EPDNEW
RGD ID:13700364
Promoter ID:EPDNEW_R10886
Type:single initiation site
Name:Rnf144b_2
Description:ring finger protein 144B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10885  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01717,947,790 - 17,947,850EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308856 AgrOrtholog
BioCyc Gene G2FUF-9919 BioCyc
Ensembl Genes ENSRNOG00000016123 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036876 ENTREZGENE
  ENSRNOT00000036876.6 UniProtKB/TrEMBL
  ENSRNOT00000155387.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro E3_UB_ligase_RBR UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  Znf_C6HC UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:364681 UniProtKB/TrEMBL
NCBI Gene 364681 ENTREZGENE
PANTHER PTHR11685 UniProtKB/TrEMBL
Pfam IBR UniProtKB/TrEMBL
  IBR_1 UniProtKB/TrEMBL
PhenoGen Rnf144b PhenoGen
PROSITE TRIAD UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016123 RatGTEx
SMART IBR UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0ABK0M2W6_RAT UniProtKB/TrEMBL
  A6J6Z9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFK0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rnf144b  ring finger protein 144B  LOC103694052  uncharacterized LOC103694052  Data merged from RGD:9470611 737654 PROVISIONAL
2014-08-25 LOC103694052  uncharacterized LOC103694052      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-04 Rnf144b  ring finger protein 144B  Ibrdc2_predicted  IBR domain containing 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Ibrdc2_predicted  IBR domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED