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Gene: Elfn1 (extracellular leucine-rich repeat and fibronectin type III domain containing 1) Rattus norvegicus

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Symbol:

Elfn1

Name:

extracellular leucine-rich repeat and fibronectin type III domain containing 1

RGD ID:

1308787

Description:

Predicted to enable signaling receptor activity. Predicted to be involved in chemical synaptic transmission and synaptic membrane adhesion. Predicted to act upstream of or within several processes, including synapse assembly; synaptic signaling; and visual perception. Predicted to be located in dendrite and excitatory synapse. Predicted to be active in axon terminus; glutamatergic synapse; and postsynaptic density membrane. Orthologous to human ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

extracellular leucine-rich repeat and fibronectin type-III domain-containing protein 1; leucine rich repeat and fibronectin type III, extracellular 1; LOC288512; Ppp1r28; protein phosphatase 1, regulatory subunit 28; RGD1308787; similar to slit homolog 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	19,773,911 - 19,839,375 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	19,772,908 - 19,841,961 (-)	Ensembl				GRCr8
mRatBN7.2	12	14,660,049 - 14,725,709 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	14,660,083 - 14,724,580 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	15,468,640 - 15,533,221 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	16,092,152 - 16,156,739 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	15,118,869 - 15,183,441 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	16,749,340 - 16,813,838 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	16,749,374 - 16,813,838 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	18,741,107 - 18,805,200 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	15,136,816 - 15,201,367 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	16,417,418 - 16,481,924 (-)	NCBI		Celera
RGSC_v3.1	12	15,167,808 - 15,170,298 (-)	NCBI
Cytogenetic Map	12	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

allopurinol (EXP)

alpha-Zearalanol (EXP)

amitrole (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

choline (ISO)

clobetasol (ISO)

dexamethasone (ISO)

diallyl disulfide (ISO)

Diallyl sulfide (ISO)

dioxygen (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

L-methionine (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methylisothiazolinone (ISO)

Monobutylphthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

niclosamide (ISO)

Nor-9-carboxy-delta9-THC (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (EXP)

pregnenolone 16alpha-carbonitrile (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

testosterone (EXP)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chemical synaptic transmission (IBA,IEA,ISO)

establishment of protein localization (IEA,ISO)

synapse assembly (ISO)

synapse organization (ISO)

synaptic membrane adhesion (IEA,ISO)

synaptic signaling (ISO)

visual perception (ISO)

Cellular Component

axon terminus (ISO)

dendrite (ISO)

excitatory synapse (ISO)

glutamatergic synapse (ISO)

membrane (IEA)

neuron projection terminus (ISO)

plasma membrane (IBA)

postsynaptic density membrane (IEA,ISO)

synapse (ISO)

Molecular Function

protein binding (ISO)

protein phosphatase inhibitor activity (IEA)

signaling receptor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19389623	PMID:23042292	PMID:23376485

Genomics

Comparative Map Data

Elfn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	19,773,911 - 19,839,375 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	19,772,908 - 19,841,961 (-)	Ensembl				GRCr8
mRatBN7.2	12	14,660,049 - 14,725,709 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	14,660,083 - 14,724,580 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	15,468,640 - 15,533,221 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	16,092,152 - 16,156,739 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	15,118,869 - 15,183,441 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	16,749,340 - 16,813,838 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	16,749,374 - 16,813,838 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	18,741,107 - 18,805,200 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	15,136,816 - 15,201,367 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	16,417,418 - 16,481,924 (-)	NCBI		Celera
RGSC_v3.1	12	15,167,808 - 15,170,298 (-)	NCBI
Cytogenetic Map	12	q11	NCBI

ELFN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	1,666,064 - 1,747,946 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	1,665,745 - 1,747,946 (+)	Ensembl			hg38	GRCh38
GRCh37	7	1,705,700 - 1,787,582 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	1,750,483 - 1,754,116 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	1,716,916 - 1,755,717 (+)	NCBI		Celera
Cytogenetic Map	7	p22.3	NCBI
HuRef	7	1,667,328 - 1,706,124 (+)	NCBI		HuRef
CHM1_1	7	1,748,384 - 1,787,174 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	1,778,588 - 1,860,511 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	1,801,219 - 1,840,008 (+)	NCBI

Elfn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	139,893,346 - 139,960,480 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	139,893,698 - 139,960,477 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	139,907,591 - 139,974,725 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	139,907,943 - 139,974,722 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	140,383,897 - 140,450,679 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	140,160,417 - 140,227,196 (+)	NCBI		MGSCv36	mm8
Celera	5	136,965,295 - 137,034,013 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	78.81	NCBI

Elfn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	9,297,791 - 9,305,874 (+)	Ensembl
ChiLan1.0	NW_004955460	9,250,522 - 9,305,895 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELFN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	6,623,186 - 6,705,210 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	54,947,885 - 55,030,920 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	1,920,075 - 2,002,910 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	2,080,859 - 2,119,808 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	2,116,452 - 2,118,938 (+)	Ensembl			panPan2	panpan1.1

ELFN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	15,275,822 - 15,338,878 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	16,744,119 - 16,811,033 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	15,396,777 - 15,469,366 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	15,402,718 - 15,405,192 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	15,205,275 - 15,272,329 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	15,132,094 - 15,198,990 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	15,419,852 - 15,486,761 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Elfn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	143,203,950 - 143,265,697 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936754	1,802,931 - 1,805,414 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936754	1,744,663 - 1,805,732 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELFN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	1,188,155 - 1,190,641 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	1,116,543 - 1,191,476 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	1,422,409 - 1,466,072 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELFN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	19,841,125 - 19,843,721 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	19,841,218 - 19,843,704 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666090	1,796,172 - 1,879,200 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elfn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	27,092,255 - 27,141,459 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	27,088,407 - 27,141,492 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Elfn1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	13,216,438 - 13,219,195 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Elfn1
827 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	334
Count of miRNA genes:	218
Interacting mature miRNAs:	260
Transcripts:	ENSRNOT00000033551
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	18749469	36488809	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	18749469	34312613	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	33700556	Rat

Markers in Region

RH135954

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	14,724,893 - 14,725,063 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	16,814,152 - 16,814,321	NCBI	Rnor6.0
Rnor_5.0	12	18,805,514 - 18,805,683	UniSTS	Rnor5.0
RGSC_v3.4	12	15,201,681 - 15,201,850	UniSTS	RGSC3.4
Celera	12	16,482,238 - 16,482,407	UniSTS
Cytogenetic Map	12	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	11	57	151	63	62	31	36	31	6	252	125	10	130	78	90	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033551 ⟹ ENSRNOP00000035917

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	19,773,928 - 19,783,721 (-)	Ensembl
mRatBN7.2 Ensembl	12	14,660,083 - 14,724,580 (-)	Ensembl
Rnor_6.0 Ensembl	12	16,749,374 - 16,813,838 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000122681 ⟹ ENSRNOP00000111717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	19,772,908 - 19,834,419 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130049 ⟹ ENSRNOP00000098668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	19,772,908 - 19,835,252 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000131734 ⟹ ENSRNOP00000102906

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	19,772,908 - 19,841,961 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150179 ⟹ ENSRNOP00000102117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	19,774,511 - 19,836,677 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173949 ⟹ ENSRNOP00000112585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	19,774,497 - 19,836,190 (-)	Ensembl

RefSeq Acc Id:

NM_001105913 ⟹ NP_001099383

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	19,773,914 - 19,838,437 (-)	NCBI
mRatBN7.2	12	14,660,049 - 14,724,580 (-)	NCBI
Rnor_6.0	12	16,749,340 - 16,813,838 (-)	NCBI
Rnor_5.0	12	18,741,107 - 18,805,200 (-)	NCBI
RGSC_v3.4	12	15,136,816 - 15,201,367 (-)	RGD
Celera	12	16,417,418 - 16,481,924 (-)	RGD

Sequence:

show sequence

CGGCCGCCCCGCCTGCCCGACCGGTCCGGGGCTGCTCCGATCGCGCGGTCCCCGGCTCTTGACG
CAGTGAGCGCCGCAGCCCGGCTCCCGCAGGCTCCTCTCCGCTCCGGGCGAGAGGCCGATCCCCA
AGCCCGGCGGGCTCCGGGAGGGGCGGGCAACACGGGAAGGGGAGGAGGTCTGTCTGGAGCCAGC
GAGAACCCCAAGGAGGAAGAGGAGGAGGAAGCCGGGGCAGCCGCCACCGCCGCCGCCGCCGCCG
CCGCCGCCGCCGCCTCCACAGTCGCCGGGGCGCTTCGGGGACTTGGGCGCGCGCTAGCGGGCGA
CCGAGCTTTCAGCCCTGGGGGCCACAAGCCGGTTCAGCAGAGAACACTTCAGGCAGAGGAACCG
GGCGAAGCCACCAGGACACACAGGCCCATGGAAAAGCAAGCTGTGGTCACCTCAGGACCCGGGA
GGACGACAAGGGGCGGTGGGCAGTGAGGGAGCCATTCTCCCTCCCAGCACCTGCGCCATGCAGC
TTGGGACAGGACATCTCTGACAGTGCAGGCAGTGCTATATCCCATCCCTAAGTCCCCTGGGGAG
GGACCACTGCCCATCCCCCGCATCCCCAAGGCAGAGTGTCCCAAGATGGCTGGGCACGGGTGGG
GTGCACCGTGGGTACTTGTGGCAGCCGCCACATTACTGCACGCTTGTGGGCTGGCCCAAGGTGA
CTGCTGGCTGATTGAGGGTGACAAGGGCTTCGTGTGGCTGGCCATCTGCAGTCAGAACCAGCCG
CCCTATGAGGCCATCCCCCAGCAGATCAACAACACCATCGTGGACCTGCGGCTTAACGAGAACC
GCATCCGCAGCGTGCAGTACGCGTCCCTCAGCCGCTTCGGGAACCTCACATACCTCAACCTCAC
CAAGAATGAGATAGGCTACATCGAGGACGGGGCCTTCTCTGGCCAGTTCAACCTCCAGGTGCTG
CAGCTGGGTTACAACCGGCTGCGCAACCTTACGGAGGGCATGCTGAGGGGCCTGAGCAAGCTCG
AGTACCTGTATCTGCAGGCCAACCTCATCGAGGTGGTGATGGCCAGCGCCTTCTGGGAGTGCCC
CAACATAGTCAACATAGATCTCTCCATGAACCGCATCCAGCAGCTTGGCAGTGGCACCTTCGCG
GGCCTGACCAAGCTCTCGGTGTGCGAGATTTACAGCAACCCTTTCTACTGCTCCTGCGAGCTGC
TGGGTTTCCTGCGCTGGCTGGCAGCCTTCACCAACGCCACCCAGACCCACGACCGTGTGCAGTG
TGAGTCTCCTCCCGTCTACGCGGGCTACTTCCTCCTGGGCCAAGGCCGCCACGGCCACCAACGT
AGCATCCTTAGCAAGCTGCAGTCCGTGTGCACTGAGGGCTCCTACACTGCTGAAGTGCTTGGCC
CGCCCCGCCCGGTGCCCGGCCGATCACAGCCAGGACATTCGCCACCTCCGCCTCCTCCAGAGCC
CAGTGACATGCCCTGCGCTGATGACGAGTGCTTCTCTGGAGACGGCACCACGCCACTGGTGGTC
CTGACGACACTGGTCCCTCAGACAGAGGCCCGTCCCTCCATGAAAGTCAAGCAGCTGACCCAGA
ACTCAGCCACCATCATGGTGCAGCTGCCCAGCCCTTTCAACCGCATGTACACACTGGAGCAGTA
CAACAACAGTAAATCGTTCACGGTGTCCAAGCTGACTCAGCCTCAGGAGGAGATCCGCCTCACC
AATCTCTACACGCTCACCAACTACACGTACTGCGTGGTCTCCACGAGTTCTGGCACCCATCATA
ACCACACCTGCCTTACCATCTGCCTGCCCAAGCCACCCAGCCCACCCGGCCCCGTGCCCAGCCC
CTCCACAGCCACCCACTACATCATGACCATCCTGGGCTGCCTCTTCGGCATGGTGCTGGTGCTG
GGTGCCGTGTACTACTGCCTGCGAAAGCGGAGGCGACAGGAGGAGAAACACAAGAAGGCCGTGG
CAGCAGCCGCTGGCAGCTTGAAAAAGACCATCATTGAACTTAAGTACGGCCCTGAGATCGAGGC
ACCCGGGCTGGCTCCGCTGACCCAGGGCCCGCTGCTGGGCCCTGAGGCTGTGACTCGAATACCC
TACCTGCCAGCTGCCACCAGCGACGTGGAGCAGTATAAGCTGGTGGAGAGCGGCGAGACCCCCA
AGGCCACCAAGGGGAACTACATTGAAGTGCGCACAGGGGAGCCGCCGGAACGCAGAGGCTGTGA
GCTGAGCCGGCCTGCCCCTGAAACCCAGAGCTCGGTAGCCGAGATCTCCACCATTGCCAAGGAA
GTGGACAGAGTCAACCAGATCATTAACAACTGCATAGACGCACTCAAGTCAGAATCCACCTCCT
TCCAGGGCGCCAAATCAGGGGCCGTGTCCGCGGCTGAGCCGCAGCTGGTGCTGCTGTCCGAGCC
TCTGGCCAGCAAGCACAGCTTCCTATCCCCTGTATACAAAGATGCCTTTGGCCATGGTGGCCTG
CAGCGGCACCACAGTGTGGAGGCTGCGACCGGGCCCCCGAGGGCCAGCACTTCATCCAGCGGTT
CTGCACGCAGCCCTCGCACCTTCCGGGCTGAGACGGCCGGCGCACATAAGGCCCCAGCCACCGA
GACCAAGTACATTGAAAAAAGCTCACCTGTGCCCGAGACCATCCTCACTGTGACACCCGCGGCC
ACTGTGCTGCGGGCGGAGGCCGACAAGAGTCGCCAGTATGGCGAGCATCGGCACTCGTACCCCG
GCTCTCACCCTGCCGAGCCACCTGCTCCGCCACCACCTCCACCCACTCATGAGGGTTTGGGAGG
CCGAAAGGCATCTATCTTGGAGCCTCTGACCCGGCCACGACCCCGAGACCTCGTCTACTCGCAA
CTGTCCCCGCAGTACCACAACCTGAGCTATTCATCCAGCCCCGAGTACACCTGCAGGGCATCCC
CAAGCATCTGGGAGCGTCTCAGACTAAGCCGGCGGAGACACAAGGATGATGCGGAGTTCATGGC
GGCTGGCCACGCCCTGCGCAAGAAGGTCCAGTTTGCTAAAGACGAGGACCTGCATGACATCCTA
GACTACTGGAAAGGCGTGTCTGCCCAGCACAAGTCCTGAACCTCCCCACCCCCACCTCCCACCC
CCCCACCCCCCCCCCCACCCCGTTAGCAGGGCCAAAGGCAGCCTGGCCCTGTCCTCTCCGAAAC
TCGTGATGCCCTTTGGACCAAAAAGGACAGACCATCCACAGCAGCTATCCCTGACTGAGACTCA
ACACTAAATCCAACGTATGTGCACAATCAGGGGCCGCTGCGTTCCGCACCTGGCCCACAGGGAC
AGCTTGAGGAGGCCGCAGGTGGCCGCAACAGTAGATATACTAATTTCCATGTAAACTGTAATGT
GCCTGCTGCCTGGTGCAAGCAAGCAAGCAAGACACACACACACACACACACACACACACACACT
CACACACACACACACACACTCACACACAAATGCATACACATGCATGTGCGCGTGCACACACAAA
CATACGCACATGCATGCACACACTCTCACACACACACATGCACAGACATGCACACATGGGACTT
CGGAAAACTGTGTCTTAGGGGTGGGGGTGGGGGAGGGGAAGTTTTTCCATTATCTTTCCTGTTT
TGAGTCTTCTCTTTCTTTTCCTCCTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTTATTTTCTTCCTTTTTAAAAATATATATATAAAAATGAAAATCTTAAAAAAAAAAGAA
AGAAAAAAAGAAAGGAGAAAGAACTAAATCACCTAGCGTGGGGTGCGTGACCAGTATAGCCAGC
TTCAAGGCACCCCCTAAATATGATCTCCAGGCTGTGGAGTGCAAAGGGGTGGAGCCAAGGCAGA
TGGGCCACTGGCCCTTGGCAGCATCCAGAGGCTGTGGGACTCTAGTGGGGAGGTGGAGACTGTG
CCTGGGGACCGGTCAGGGTGGCAAGAGGGGTGCAGGCTGGGAAACATTGTGGGTCCCCCCCACC
TCGGCCCCATCTTCATTGTATACTGTAGTTGTTCTATTGTACAGAAAAAAAATCTATATTTGCA
AAGTTTGCTGTAAAATGAGAGAGAAAAAAAGACTATGTCTACTTAAAAAAAAAAAAACTCAGCA
AAGAAAAAAAATCC

hide sequence

RefSeq Acc Id:

XM_006248924 ⟹ XP_006248986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	19,773,911 - 19,834,301 (-)	NCBI
mRatBN7.2	12	14,660,760 - 14,720,444 (-)	NCBI
Rnor_6.0	12	16,750,381 - 16,809,697 (-)	NCBI
Rnor_5.0	12	18,741,107 - 18,805,200 (-)	NCBI

Sequence:

show sequence

GATGGGCGAAGCTGGGGAGGAATTTCAATCCGAGAGCGAACTTAGAGCTTGAAGGACGGCAGCG
GCAGCGGTGGTGGCGGTGGCGGTGTTGGTGGCGGGTGCAGCCCTGGAACGCCGGCCGAGCCCGG
CCGGGCAGCAGAGAACACTTCAGGCAGAGGAACCGGGCGAAGCCACCAGGACACACAGGCCCAT
GGAAAAGCAAGCTGTGGTCACCTCAGGACCCGGGAGGACGACAAGGGGCGGTGGGCAGTGAGGG
AGCCATTCTCCCTCCCAGCACCTGCGCCATGCAGCTTGGGACAGGACATCTCTGACAGTGCAGG
CAGTGCTATATCCCATCCCTAAGTCCCCTGGGGAGGGACCACTGCCCATCCCCCGCATCCCCAA
GGCAGAGTGTCCCAAGATGGCTGGGCACGGGTGGGGTGCACCGTGGGTACTTGTGGCAGCCGCC
ACATTACTGCACGCTTGTGGGCTGGCCCAAGGTGACTGCTGGCTGATTGAGGGTGACAAGGGCT
TCGTGTGGCTGGCCATCTGCAGTCAGAACCAGCCGCCCTATGAGGCCATCCCCCAGCAGATCAA
CAACACCATCGTGGACCTGCGGCTTAACGAGAACCGCATCCGCAGCGTGCAGTACGCGTCCCTC
AGCCGCTTCGGGAACCTCACATACCTCAACCTCACCAAGAATGAGATAGGCTACATCGAGGACG
GGGCCTTCTCTGGCCAGTTCAACCTCCAGGTGCTGCAGCTGGGTTACAACCGGCTGCGCAACCT
TACGGAGGGCATGCTGAGGGGCCTGAGCAAGCTCGAGTACCTGTATCTGCAGGCCAACCTCATC
GAGGTGGTGATGGCCAGCGCCTTCTGGGAGTGCCCCAACATAGTCAACATAGATCTCTCCATGA
ACCGCATCCAGCAGCTTGGCAGTGGCACCTTCGCGGGCCTGACCAAGCTCTCGGTGTGCGAGAT
TTACAGCAACCCTTTCTACTGCTCCTGCGAGCTGCTGGGTTTCCTGCGCTGGCTGGCAGCCTTC
ACCAACGCCACCCAGACCCACGACCGTGTGCAGTGTGAGTCTCCTCCCGTCTACGCGGGCTACT
TCCTCCTGGGCCAAGGCCGCCACGGCCACCAACGTAGCATCCTTAGCAAGCTGCAGTCCGTGTG
CACTGAGGGCTCCTACACTGCTGAAGTGCTTGGCCCGCCCCGCCCGGTGCCCGGCCGATCACAG
CCAGGACATTCGCCACCTCCGCCTCCTCCAGAGCCCAGTGACATGCCCTGCGCTGATGACGAGT
GCTTCTCTGGAGACGGCACCACGCCACTGGTGGTCCTGACGACACTGGTCCCTCAGACAGAGGC
CCGTCCCTCCATGAAAGTCAAGCAGCTGACCCAGAACTCAGCCACCATCATGGTGCAGCTGCCC
AGCCCTTTCAACCGCATGTACACACTGGAGCAGTACAACAACAGTAAATCGTTCACGGTGTCCA
AGCTGACTCAGCCTCAGGAGGAGATCCGCCTCACCAATCTCTACACGCTCACCAACTACACGTA
CTGCGTGGTCTCCACGAGTTCTGGCACCCATCATAACCACACCTGCCTTACCATCTGCCTGCCC
AAGCCACCCAGCCCACCCGGCCCCGTGCCCAGCCCCTCCACAGCCACCCACTACATCATGACCA
TCCTGGGCTGCCTCTTCGGCATGGTGCTGGTGCTGGGTGCCGTGTACTACTGCCTGCGAAAGCG
GAGGCGACAGGAGGAGAAACACAAGAAGGCCGTGGCAGCAGCCGCTGGCAGCTTGAAAAAGACC
ATCATTGAACTTAAGTACGGCCCTGAGATCGAGGCACCCGGGCTGGCTCCGCTGACCCAGGGCC
CGCTGCTGGGCCCTGAGGCTGTGACTCGAATACCCTACCTGCCAGCTGCCACCAGCGACGTGGA
GCAGTATAAGCTGGTGGAGAGCGGCGAGACCCCCAAGGCCACCAAGGGGAACTACATTGAAGTG
CGCACAGGGGAGCCGCCGGAACGCAGAGGCTGTGAGCTGAGCCGGCCTGCCCCTGAAACCCAGA
GCTCGGTAGCCGAGATCTCCACCATTGCCAAGGAAGTGGACAGAGTCAACCAGATCATTAACAA
CTGCATAGACGCACTCAAGTCAGAATCCACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGTCC
GCGGCTGAGCCGCAGCTGGTGCTGCTGTCCGAGCCTCTGGCCAGCAAGCACAGCTTCCTATCCC
CTGTATACAAAGATGCCTTTGGCCATGGTGGCCTGCAGCGGCACCACAGTGTGGAGGCTGCGAC
CGGGCCCCCGAGGGCCAGCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCACCTTCCGGGCT
GAGACGGCCGGCGCACATAAGGCCCCAGCCACCGAGACCAAGTACATTGAAAAAAGCTCACCTG
TGCCCGAGACCATCCTCACTGTGACACCCGCGGCCACTGTGCTGCGGGCGGAGGCCGACAAGAG
TCGCCAGTATGGCGAGCATCGGCACTCGTACCCCGGCTCTCACCCTGCCGAGCCACCTGCTCCG
CCACCACCTCCACCCACTCATGAGGGTTTGGGAGGCCGAAAGGCATCTATCTTGGAGCCTCTGA
CCCGGCCACGACCCCGAGACCTCGTCTACTCGCAACTGTCCCCGCAGTACCACAACCTGAGCTA
TTCATCCAGCCCCGAGTACACCTGCAGGGCATCCCCAAGCATCTGGGAGCGTCTCAGACTAAGC
CGGCGGAGACACAAGGATGATGCGGAGTTCATGGCGGCTGGCCACGCCCTGCGCAAGAAGGTCC
AGTTTGCTAAAGACGAGGACCTGCATGACATCCTAGACTACTGGAAAGGCGTGTCTGCCCAGCA
CAAGTCCTGAACCTCCCCACCCCCACCTCCCACCCC

hide sequence

RefSeq Acc Id:

XM_006248926 ⟹ XP_006248988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	19,773,911 - 19,839,375 (-)	NCBI
mRatBN7.2	12	14,660,760 - 14,725,709 (-)	NCBI
Rnor_6.0	12	16,750,381 - 16,813,562 (-)	NCBI
Rnor_5.0	12	18,741,107 - 18,805,200 (-)	NCBI

Sequence:

show sequence

GTCGCCGGGGCGCTTCGGGGACTTGGGCGCGCGCTAGCGGGCGACCGAGCTTTCAGCCCTGGGG
GCCACAAGCCGGTTCAGAGAACACTTCAGGCAGAGGAACCGGGCGAAGCCACCAGGACACACAG
GCCCATGGAAAAGCAAGCTGTGGTCACCTCAGGACCCGGGAGGACGACAAGGGGCGGTGGGCAG
TGAGGGAGCCATTCTCCCTCCCAGCACCTGCGCCATGCAGCTTGGGACAGGACATCTCTGACAG
TGCAGGCAGTGCTATATCCCATCCCTAAGTCCCCTGGGGAGGGACCACTGCCCATCCCCCGCAT
CCCCAAGGCAGAGTGTCCCAAGATGGCTGGGCACGGGTGGGGTGCACCGTGGGTACTTGTGGCA
GCCGCCACATTACTGCACGCTTGTGGGCTGGCCCAAGGTGACTGCTGGCTGATTGAGGGTGACA
AGGGCTTCGTGTGGCTGGCCATCTGCAGTCAGAACCAGCCGCCCTATGAGGCCATCCCCCAGCA
GATCAACAACACCATCGTGGACCTGCGGCTTAACGAGAACCGCATCCGCAGCGTGCAGTACGCG
TCCCTCAGCCGCTTCGGGAACCTCACATACCTCAACCTCACCAAGAATGAGATAGGCTACATCG
AGGACGGGGCCTTCTCTGGCCAGTTCAACCTCCAGGTGCTGCAGCTGGGTTACAACCGGCTGCG
CAACCTTACGGAGGGCATGCTGAGGGGCCTGAGCAAGCTCGAGTACCTGTATCTGCAGGCCAAC
CTCATCGAGGTGGTGATGGCCAGCGCCTTCTGGGAGTGCCCCAACATAGTCAACATAGATCTCT
CCATGAACCGCATCCAGCAGCTTGGCAGTGGCACCTTCGCGGGCCTGACCAAGCTCTCGGTGTG
CGAGATTTACAGCAACCCTTTCTACTGCTCCTGCGAGCTGCTGGGTTTCCTGCGCTGGCTGGCA
GCCTTCACCAACGCCACCCAGACCCACGACCGTGTGCAGTGTGAGTCTCCTCCCGTCTACGCGG
GCTACTTCCTCCTGGGCCAAGGCCGCCACGGCCACCAACGTAGCATCCTTAGCAAGCTGCAGTC
CGTGTGCACTGAGGGCTCCTACACTGCTGAAGTGCTTGGCCCGCCCCGCCCGGTGCCCGGCCGA
TCACAGCCAGGACATTCGCCACCTCCGCCTCCTCCAGAGCCCAGTGACATGCCCTGCGCTGATG
ACGAGTGCTTCTCTGGAGACGGCACCACGCCACTGGTGGTCCTGACGACACTGGTCCCTCAGAC
AGAGGCCCGTCCCTCCATGAAAGTCAAGCAGCTGACCCAGAACTCAGCCACCATCATGGTGCAG
CTGCCCAGCCCTTTCAACCGCATGTACACACTGGAGCAGTACAACAACAGTAAATCGTTCACGG
TGTCCAAGCTGACTCAGCCTCAGGAGGAGATCCGCCTCACCAATCTCTACACGCTCACCAACTA
CACGTACTGCGTGGTCTCCACGAGTTCTGGCACCCATCATAACCACACCTGCCTTACCATCTGC
CTGCCCAAGCCACCCAGCCCACCCGGCCCCGTGCCCAGCCCCTCCACAGCCACCCACTACATCA
TGACCATCCTGGGCTGCCTCTTCGGCATGGTGCTGGTGCTGGGTGCCGTGTACTACTGCCTGCG
AAAGCGGAGGCGACAGGAGGAGAAACACAAGAAGGCCGTGGCAGCAGCCGCTGGCAGCTTGAAA
AAGACCATCATTGAACTTAAGTACGGCCCTGAGATCGAGGCACCCGGGCTGGCTCCGCTGACCC
AGGGCCCGCTGCTGGGCCCTGAGGCTGTGACTCGAATACCCTACCTGCCAGCTGCCACCAGCGA
CGTGGAGCAGTATAAGCTGGTGGAGAGCGGCGAGACCCCCAAGGCCACCAAGGGGAACTACATT
GAAGTGCGCACAGGGGAGCCGCCGGAACGCAGAGGCTGTGAGCTGAGCCGGCCTGCCCCTGAAA
CCCAGAGCTCGGTAGCCGAGATCTCCACCATTGCCAAGGAAGTGGACAGAGTCAACCAGATCAT
TAACAACTGCATAGACGCACTCAAGTCAGAATCCACCTCCTTCCAGGGCGCCAAATCAGGGGCC
GTGTCCGCGGCTGAGCCGCAGCTGGTGCTGCTGTCCGAGCCTCTGGCCAGCAAGCACAGCTTCC
TATCCCCTGTATACAAAGATGCCTTTGGCCATGGTGGCCTGCAGCGGCACCACAGTGTGGAGGC
TGCGACCGGGCCCCCGAGGGCCAGCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCACCTTC
CGGGCTGAGACGGCCGGCGCACATAAGGCCCCAGCCACCGAGACCAAGTACATTGAAAAAAGCT
CACCTGTGCCCGAGACCATCCTCACTGTGACACCCGCGGCCACTGTGCTGCGGGCGGAGGCCGA
CAAGAGTCGCCAGTATGGCGAGCATCGGCACTCGTACCCCGGCTCTCACCCTGCCGAGCCACCT
GCTCCGCCACCACCTCCACCCACTCATGAGGGTTTGGGAGGCCGAAAGGCATCTATCTTGGAGC
CTCTGACCCGGCCACGACCCCGAGACCTCGTCTACTCGCAACTGTCCCCGCAGTACCACAACCT
GAGCTATTCATCCAGCCCCGAGTACACCTGCAGGGCATCCCCAAGCATCTGGGAGCGTCTCAGA
CTAAGCCGGCGGAGACACAAGGATGATGCGGAGTTCATGGCGGCTGGCCACGCCCTGCGCAAGA
AGGTCCAGTTTGCTAAAGACGAGGACCTGCATGACATCCTAGACTACTGGAAAGGCGTGTCTGC
CCAGCACAAGTCCTGAACCTCCCCACCCCCACCTCCCACCCC

hide sequence

RefSeq Acc Id:

XM_039089190 ⟹ XP_038945118

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	19,773,911 - 19,835,078 (-)	NCBI
mRatBN7.2	12	14,660,760 - 14,721,221 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099383	(Get FASTA)	NCBI Sequence Viewer
	XP_006248986	(Get FASTA)	NCBI Sequence Viewer
	XP_006248988	(Get FASTA)	NCBI Sequence Viewer
	XP_038945118	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89744	(Get FASTA)	NCBI Sequence Viewer
	EDL89745	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035917.2
	ENSRNOP00000098668
	ENSRNOP00000098668.1
	ENSRNOP00000102117.1
	ENSRNOP00000102906
	ENSRNOP00000102906.1
	ENSRNOP00000111717
	ENSRNOP00000111717.1
	ENSRNOP00000112585.1

RefSeq Acc Id:	NP_001099383 ⟸ NM_001105913
- Peptide Label:	precursor
- UniProtKB:	D3ZZ44 (UniProtKB/TrEMBL), A6K1T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGHGWGAPWVLVAAATLLHACGLAQGDCWLIEGDKGFVWLAICSQNQPPYEAIPQQINNTIVD LRLNENRIRSVQYASLSRFGNLTYLNLTKNEIGYIEDGAFSGQFNLQVLQLGYNRLRNLTEGML RGLSKLEYLYLQANLIEVVMASAFWECPNIVNIDLSMNRIQQLGSGTFAGLTKLSVCEIYSNPF YCSCELLGFLRWLAAFTNATQTHDRVQCESPPVYAGYFLLGQGRHGHQRSILSKLQSVCTEGSY TAEVLGPPRPVPGRSQPGHSPPPPPPEPSDMPCADDECFSGDGTTPLVVLTTLVPQTEARPSMK VKQLTQNSATIMVQLPSPFNRMYTLEQYNNSKSFTVSKLTQPQEEIRLTNLYTLTNYTYCVVST SSGTHHNHTCLTICLPKPPSPPGPVPSPSTATHYIMTILGCLFGMVLVLGAVYYCLRKRRRQEE KHKKAVAAAAGSLKKTIIELKYGPEIEAPGLAPLTQGPLLGPEAVTRIPYLPAATSDVEQYKLV ESGETPKATKGNYIEVRTGEPPERRGCELSRPAPETQSSVAEISTIAKEVDRVNQIINNCIDAL KSESTSFQGAKSGAVSAAEPQLVLLSEPLASKHSFLSPVYKDAFGHGGLQRHHSVEAATGPPRA STSSSGSARSPRTFRAETAGAHKAPATETKYIEKSSPVPETILTVTPAATVLRAEADKSRQYGE HRHSYPGSHPAEPPAPPPPPPTHEGLGGRKASILEPLTRPRPRDLVYSQLSPQYHNLSYSSSPE YTCRASPSIWERLRLSRRRHKDDAEFMAAGHALRKKVQFAKDEDLHDILDYWKGVSAQHKS hide sequence

RefSeq Acc Id:	XP_006248988 ⟸ XM_006248926
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZ44 (UniProtKB/TrEMBL), A6K1T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGHGWGAPWVLVAAATLLHACGLAQGDCWLIEGDKGFVWLAICSQNQPPYEAIPQQINNTIVD LRLNENRIRSVQYASLSRFGNLTYLNLTKNEIGYIEDGAFSGQFNLQVLQLGYNRLRNLTEGML RGLSKLEYLYLQANLIEVVMASAFWECPNIVNIDLSMNRIQQLGSGTFAGLTKLSVCEIYSNPF YCSCELLGFLRWLAAFTNATQTHDRVQCESPPVYAGYFLLGQGRHGHQRSILSKLQSVCTEGSY TAEVLGPPRPVPGRSQPGHSPPPPPPEPSDMPCADDECFSGDGTTPLVVLTTLVPQTEARPSMK VKQLTQNSATIMVQLPSPFNRMYTLEQYNNSKSFTVSKLTQPQEEIRLTNLYTLTNYTYCVVST SSGTHHNHTCLTICLPKPPSPPGPVPSPSTATHYIMTILGCLFGMVLVLGAVYYCLRKRRRQEE KHKKAVAAAAGSLKKTIIELKYGPEIEAPGLAPLTQGPLLGPEAVTRIPYLPAATSDVEQYKLV ESGETPKATKGNYIEVRTGEPPERRGCELSRPAPETQSSVAEISTIAKEVDRVNQIINNCIDAL KSESTSFQGAKSGAVSAAEPQLVLLSEPLASKHSFLSPVYKDAFGHGGLQRHHSVEAATGPPRA STSSSGSARSPRTFRAETAGAHKAPATETKYIEKSSPVPETILTVTPAATVLRAEADKSRQYGE HRHSYPGSHPAEPPAPPPPPPTHEGLGGRKASILEPLTRPRPRDLVYSQLSPQYHNLSYSSSPE YTCRASPSIWERLRLSRRRHKDDAEFMAAGHALRKKVQFAKDEDLHDILDYWKGVSAQHKS hide sequence

RefSeq Acc Id:	XP_006248986 ⟸ XM_006248924
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZ44 (UniProtKB/TrEMBL), A6K1T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGHGWGAPWVLVAAATLLHACGLAQGDCWLIEGDKGFVWLAICSQNQPPYEAIPQQINNTIVD LRLNENRIRSVQYASLSRFGNLTYLNLTKNEIGYIEDGAFSGQFNLQVLQLGYNRLRNLTEGML RGLSKLEYLYLQANLIEVVMASAFWECPNIVNIDLSMNRIQQLGSGTFAGLTKLSVCEIYSNPF YCSCELLGFLRWLAAFTNATQTHDRVQCESPPVYAGYFLLGQGRHGHQRSILSKLQSVCTEGSY TAEVLGPPRPVPGRSQPGHSPPPPPPEPSDMPCADDECFSGDGTTPLVVLTTLVPQTEARPSMK VKQLTQNSATIMVQLPSPFNRMYTLEQYNNSKSFTVSKLTQPQEEIRLTNLYTLTNYTYCVVST SSGTHHNHTCLTICLPKPPSPPGPVPSPSTATHYIMTILGCLFGMVLVLGAVYYCLRKRRRQEE KHKKAVAAAAGSLKKTIIELKYGPEIEAPGLAPLTQGPLLGPEAVTRIPYLPAATSDVEQYKLV ESGETPKATKGNYIEVRTGEPPERRGCELSRPAPETQSSVAEISTIAKEVDRVNQIINNCIDAL KSESTSFQGAKSGAVSAAEPQLVLLSEPLASKHSFLSPVYKDAFGHGGLQRHHSVEAATGPPRA STSSSGSARSPRTFRAETAGAHKAPATETKYIEKSSPVPETILTVTPAATVLRAEADKSRQYGE HRHSYPGSHPAEPPAPPPPPPTHEGLGGRKASILEPLTRPRPRDLVYSQLSPQYHNLSYSSSPE YTCRASPSIWERLRLSRRRHKDDAEFMAAGHALRKKVQFAKDEDLHDILDYWKGVSAQHKS hide sequence

Ensembl Acc Id:

ENSRNOP00000035917 ⟸ ENSRNOT00000033551

RefSeq Acc Id:	XP_038945118 ⟸ XM_039089190
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZ44 (UniProtKB/TrEMBL), A6K1T6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098668 ⟸ ENSRNOT00000130049

Ensembl Acc Id:

ENSRNOP00000102117 ⟸ ENSRNOT00000150179

Ensembl Acc Id:

ENSRNOP00000102906 ⟸ ENSRNOT00000131734

Ensembl Acc Id:

ENSRNOP00000112585 ⟸ ENSRNOT00000173949

Ensembl Acc Id:

ENSRNOP00000111717 ⟸ ENSRNOT00000122681

Protein Domains

LRRCT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZ44-F1-model_v2	AlphaFold	D3ZZ44	1-829	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308787	AgrOrtholog
BioCyc Gene	G2FUF-19909	BioCyc
Ensembl Genes	ENSRNOG00000022767	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033551.6	UniProtKB/TrEMBL
	ENSRNOT00000122681	ENTREZGENE
	ENSRNOT00000122681.1	UniProtKB/TrEMBL
	ENSRNOT00000130049	ENTREZGENE
	ENSRNOT00000130049.1	UniProtKB/TrEMBL
	ENSRNOT00000131734	ENTREZGENE
	ENSRNOT00000131734.1	UniProtKB/TrEMBL
	ENSRNOT00000150179.1	UniProtKB/TrEMBL
	ENSRNOT00000173949.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	ELFN_Fn3	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_TM_domain-containing	UniProtKB/TrEMBL
KEGG Report	rno:288512	UniProtKB/TrEMBL
NCBI Gene	288512	ENTREZGENE
PANTHER	ANTIGEN BSP, PUTATIVE-RELATED	UniProtKB/TrEMBL
	LRRCT DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	ELFN_Fn3	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PhenoGen	Elfn1	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022767	RatGTEx
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A6K1T6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZ44	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-12-06	Elfn1	extracellular leucine-rich repeat and fibronectin type III domain containing 1	Ppp1r28	protein phosphatase 1, regulatory subunit 28	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-10-21	Ppp1r28	protein phosphatase 1, regulatory subunit 28	Elfn1	extracellular leucine-rich repeat and fibronectin type III domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-29	Elfn1	extracellular leucine-rich repeat and fibronectin type III domain containing 1	Elfn1	leucine rich repeat and fibronectin type III, extracellular 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Elfn1	leucine rich repeat and fibronectin type III, extracellular 1	RGD1308787_predicted	similar to slit homolog 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1308787_predicted	similar to slit homolog 1 (predicted)	LOC288512_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288512_predicted	similar to slit homolog 1 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar