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Gene: Ripply2 (ripply transcriptional repressor 2) Rattus norvegicus
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Symbol:
Ripply2
Name:
ripply transcriptional repressor 2
RGD ID:
1308746
Description:
Predicted to be involved in embryonic pattern specification and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including Notch signaling pathway; post-anal tail morphogenesis; and regionalization. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in spondylocostal dysostosis 6. Orthologous to human RIPPLY2 (ripply transcriptional repressor 2); INTERACTS WITH bisphenol A; methamphetamine; SCH 23390.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
LOC363111; RGD1308746; ripply2 homolog; ripply2 homolog (zebrafish); similar to Down syndrome critical region protein 6
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 8 96,854,393 - 96,858,963 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 8 96,854,508 - 96,858,963 (+) Ensembl GRCr8 mRatBN7.2 8 87,974,444 - 87,979,002 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 8 87,974,776 - 87,978,969 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 8 93,644,365 - 93,648,821 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 8 91,843,583 - 91,848,039 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 8 89,680,879 - 89,685,334 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 8 94,676,579 - 94,691,125 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 8 94,686,938 - 94,691,041 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 8 94,184,957 - 94,199,385 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 8 92,272,079 - 92,276,182 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 8 87,550,383 - 87,564,833 (+) NCBI Celera RGSC_v3.1 8 92,291,533 - 92,295,746 (+) NCBI Cytogenetic Map 8 q31 NCBI
JBrowse:
Imported Disease Annotations - CTD
Imported Disease Annotations - MGI
Imported Disease Annotations - OMIM
Biological Process
Only show annotations with direct experimental evidence (0 objects hidden)
Ripply2 Rat axis specification acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3513254 PMID:17531978 RGD PMID:17531978 Ripply2 Rat bone morphogenesis acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3614797 PMID:20346937 RGD PMID:20346937 Ripply2 Rat determination of left/right symmetry acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3513254 PMID:17531978 RGD PMID:17531978 Ripply2 Rat embryonic pattern specification involved_in IBA MGI:2685968|MGI:3614797|PANTHER:PTN001047732|ZFIN:ZDB-GENE-060113-1 1600115 GO_REF:0000033 GO_Central GO_REF:0000033 Ripply2 Rat negative regulation of transcription by RNA polymerase II involved_in IBA MGI:2181192|PANTHER:PTN001047732|UniProtKB:B7XDF1|UniProtKB:Q25QX6|UniProtKB:Q8QGU6 1600115 GO_REF:0000033 GO_Central GO_REF:0000033 Ripply2 Rat Notch signaling pathway acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3614797 PMID:20346937 RGD PMID:20346937 Ripply2 Rat ossification acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3513254 PMID:17531978 RGD PMID:17531978 Ripply2 Rat post-anal tail morphogenesis acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3513254 PMID:17531978 RGD PMID:17531978 Ripply2 Rat regulation of gene expression acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3614797 PMID:20346937 RGD PMID:20346937 Ripply2 Rat somite rostral/caudal axis specification acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3614797 PMID:20346937 RGD PMID:20346937 Ripply2 Rat somite rostral/caudal axis specification involved_in ISO RGD:1318698,MGI:2685968 1624291 PMID:16326386 RGD PMID:16326386 Ripply2 Rat somitogenesis acts_upstream_of_or_within ISO RGD:1318698,MGI:2685968 1624291 MGI:3513254 PMID:17531978 RGD PMID:17531978 Ripply2 Rat somitogenesis involved_in ISO RGD:1318698,MGI:2685968 1624291 PMID:16326386 RGD PMID:16326386
QTLs in Region (GRCr8)
12879878 Bw183 Body weight QTL 183 0.001 body mass (VT:0001259) body weight (CMO:0000012) 8 62848139 107848139 Rat 1300177 Cm2 Cardiac mass QTL 2 3.65 heart mass (VT:0007028) heart weight (CMO:0000017) 8 63141536 109261840 Rat 1549909 Stresp11 Stress response QTL 11 6.83 0.0019 stress-related behavior trait (VT:0010451) number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960) 8 82352698 127352698 Rat 1549908 Neudeg1 Neurodegradation QTL 1 5.5 0 nervous system integrity trait (VT:0010566) logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986) 8 58337123 103337123 Rat 12879879 Cm99 Cardiac mass QTL 99 0.001 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 8 62848139 107848139 Rat 1554321 Bmd3 Bone mineral density QTL 3 7.9 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 8 49849908 118871671 Rat 9590292 Uminl3 Urine mineral level QTL 3 3.62 0.001 urine mineral amount (VT:0015086) urine electrolyte level (CMO:0000593) 8 80768445 125768445 Rat 1331804 Cm30 Cardiac mass QTL 30 3.77443 heart mass (VT:0007028) heart wet weight (CMO:0000069) 8 62970527 107970527 Rat 1578769 Uae31 Urinary albumin excretion QTL 31 3.3 0.001 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 8 39106363 103375781 Rat 12879880 Cm100 Cardiac mass QTL 100 0.001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 8 62848139 107848139 Rat 12879881 Cm101 Cardiac mass QTL 101 0.001 heart right ventricle mass (VT:0007033) heart right ventricle weight to body weight ratio (CMO:0000914) 8 62848139 107848139 Rat 12879882 Am8 Aortic mass QTL 8 0.001 aorta mass (VT:0002845) aorta weight to aorta length to body weight ratio (CMO:0002722) 8 62848139 107848139 Rat 12879883 Kidm65 Kidney mass QTL 65 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 8 62848139 107848139 Rat 70161 Bp62 Blood pressure QTL 62 2.9 0.001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 51589699 99045312 Rat 71120 Niddm21 Non-insulin dependent diabetes mellitus QTL 21 3.73 blood glucose amount (VT:0000188) plasma glucose level (CMO:0000042) 8 66992095 111992095 Rat 1358912 Bw51 Body weight QTL 51 2.95 body mass (VT:0001259) body weight (CMO:0000012) 8 60248093 105248093 Rat 1578765 Klgr1 Kidney lesion grade QTL 1 3.3 0.0001 kidney morphology trait (VT:0002135) organ lesion measurement (CMO:0000677) 8 39106363 103375781 Rat 634332 Pia18 Pristane induced arthritis QTL 18 4 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 8 84192326 132782436 Rat 1300171 Bp184 Blood pressure QTL 184 3.66 arterial blood pressure trait (VT:2000000) blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) 8 79394435 132782436 Rat 1578755 Pur5 Proteinuria QTL 5 3.3 0.0001 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 8 39106258 103375958 Rat 631210 Bw3 Body weight QTL3 5.9 mesenteric fat pad mass (VT:0010427) mesenteric fat pad weight to body weight ratio (CMO:0000654) 8 61019838 121662124 Rat 2293697 Bmd39 Bone mineral density QTL 39 femur strength trait (VT:0010010) femur total energy absorbed before break (CMO:0001677) 8 62848139 107848139 Rat 8662823 Vetf5 Vascular elastic tissue fragility QTL 5 1.9 artery integrity trait (VT:0010639) patent ductus arteriosus score (CMO:0002566) 8 63404444 108404444 Rat 1358896 Bp262 Blood pressure QTL 262 2.89 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 35464071 107982864 Rat 1331837 Bw23 Body weight QTL 23 4.19 0.00007 body mass (VT:0001259) body weight (CMO:0000012) 8 55428416 107963099 Rat 1331838 Niddm61 Non-insulin dependent diabetes mellitus QTL 61 3.53 0.0004 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 8 62963099 107963099 Rat 8694446 Bw170 Body weight QTL 170 12.07 0.001 retroperitoneal fat pad mass (VT:0010430) retroperitoneal fat pad weight to body weight ratio (CMO:0000635) 8 80768445 125768445 Rat 631650 Stl6 Serum triglyceride level QTL 6 4 0.0019 blood triglyceride amount (VT:0002644) plasma triglyceride level (CMO:0000548) 8 70041301 121080908 Rat 1331769 Rf39 Renal function QTL 39 3.871 urine output (VT:0003620) timed urine volume (CMO:0000260) 8 50763951 107970527 Rat 1581557 Eae16 Experimental allergic encephalomyelitis QTL 16 3.8 nervous system integrity trait (VT:0010566) experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) 8 68690349 119799881 Rat 10450865 Bw175 Body weight QTL 175 4.1 total fat pad mass (VT:0015008) adipose tissue molecular composition measurement (CMO:0000484) 8 84192326 129192326 Rat 1358907 Cm40 Cardiac mass QTL 40 1.89 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 8 35464071 107982864 Rat 70197 BpQTLcluster8 Blood pressure QTL cluster 8 3.482 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 55428333 127966348 Rat 2316950 Scl66 Serum cholesterol level QTL 66 4.1 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 8 39106363 114525825 Rat 2300181 Bmd55 Bone mineral density QTL 55 5.7 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 8 85348065 130348065 Rat 724540 Uae8 Urinary albumin excretion QTL 8 5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 8 39106258 103375958 Rat 10402857 Bp380 Blood pressure QTL 380 0.95 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 62848139 107848139 Rat 1358892 Kidm26 Kidney mass QTL 26 3.69 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 8 35464071 107982864 Rat 2301402 Bp316 Blood pressure QTL 316 0.005 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 62848139 107848139 Rat 631664 Hcar3 Hepatocarcinoma resistance QTL 3 2.9 0.0005 liver integrity trait (VT:0010547) volume of individual liver tumorous lesion (CMO:0001078) 8 62982864 107982864 Rat 8694200 Abfw4 Abdominal fat weight QTL 4 9.07 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 8 80768445 125768445 Rat 8694392 Bw161 Body weight QTL 161 8.06 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 8 80768445 125768445 Rat 61437 Cia6 Collagen induced arthritis QTL 6 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 8 91340911 131690273 Rat