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Gene: Arhgap35 (Rho GTPase activating protein 35) Rattus norvegicus

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Symbol:

Arhgap35

Name:

Rho GTPase activating protein 35

RGD ID:

1308738

Description:

Enables GTPase activating protein binding activity and GTPase activator activity. Involved in positive regulation of GTPase activity. Predicted to be located in actin cytoskeleton; ciliary basal body; and cytoplasm. Predicted to be active in cytosol. Orthologous to human ARHGAP35 (Rho GTPase activating protein 35); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; platelet-derived growth factor signaling pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GAP-associated protein p190; glucocorticoid receptor DNA binding factor 1; glucocorticoid receptor DNA-binding factor 1; Grlf1; LOC306400; p190RhoGAP; rho GTPase-activating protein 35

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGAP35 (Rho GTPase activating protein 35)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Arhgap35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgap35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGAP35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGAP35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgap35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGAP35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGAP35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgap35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arhgap35 (Rho GTPase activating protein 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARHGAP35 (Rho GTPase activating protein 35)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ARHGAP35 (Rho GTPase activating protein 35)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arhgap35 (Rho GTPase activating protein 35)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap35a (Rho GTPase activating protein 35a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RhoGAPp190	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap35b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rga-5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rga-5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arhgap35	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	arhgap35	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Grlf1-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	86,330,566 - 86,447,414 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	86,330,566 - 86,447,414 (-)	Ensembl				GRCr8
mRatBN7.2	1	77,202,436 - 77,319,298 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	77,202,436 - 77,319,298 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	82,576,527 - 82,693,394 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	91,140,568 - 91,257,426 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	84,331,623 - 84,448,478 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	78,456,409 - 78,573,374 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	78,456,409 - 78,573,374 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	79,703,650 - 79,820,568 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	76,757,031 - 76,824,155 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	71,687,713 - 71,804,603 (-)	NCBI		Celera
RGSC_v3.1	16	28,093,164 - 28,259,729 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anophthalmia (ISO)

lung adenocarcinoma (ISO)

Martsolf syndrome 1 (ISO)

microphthalmia (ISO)

Neurodevelopmental Disorders (ISO)

Peters anomaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

alachlor (EXP)

amiodarone (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol AF (ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

clobetasol (ISO)

clofibrate (ISO)

coumarin (ISO)

dichlorine (EXP)

dicrotophos (ISO)

diquat (ISO)

endosulfan (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen sulfide (ISO)

isoflurane (ISO)

ivermectin (ISO)

leflunomide (EXP)

methapyrilene (ISO)

methimazole (EXP)

Nor-9-carboxy-delta9-THC (ISO)

ochratoxin A (ISO)

okadaic acid (ISO)

ozone (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IEA,ISO,ISS)

axonal fasciculation (IEA,ISO,ISS)

camera-type eye development (ISO)

cell migration (IEA,ISO,ISS)

central nervous system neuron axonogenesis (IEA,ISO,ISS)

DNA-templated transcription (IEA)

establishment or maintenance of actin cytoskeleton polarity (IEA,ISO,ISS)

forebrain development (ISO)

mammary gland development (IEA,ISO,ISS)

negative regulation of Rho protein signal transduction (ISO)

negative regulation of vascular permeability (ISO)

neural tube closure (ISO)

neuron projection guidance (IEA,ISO,ISS)

positive regulation of cilium assembly (IEA,ISO,ISS)

positive regulation of GTPase activity (IDA)

positive regulation of neuron projection development (IEA,ISO,ISS)

regulation of actin cytoskeleton organization (IEA,ISO,ISS)

regulation of actin polymerization or depolymerization (IEA,ISO,ISS)

regulation of axonogenesis (IBA,IEA,ISO,ISS)

regulation of cell shape (ISO)

regulation of cell size (IBA)

Rho protein signal transduction (IBA)

signal transduction (IEA)

wound healing, spreading of cells (IEA,ISO,ISS)

Cellular Component

actin cytoskeleton (IEA,ISO)

ciliary basal body (IEA,ISO,ISS)

cytoplasm (IEA,ISO)

cytosol (IBA)

nucleus (IEA)

plasma membrane (IEA)

Molecular Function

DNA binding (IEA)

GTP binding (IEA)

GTPase activating protein binding (IPI)

GTPase activator activity (IBA,IDA,IEA,ISO,ISS)

GTPase activity (IEA)

lipid binding (IEA)

nucleotide binding (IEA)

phospholipid binding (ISO,ISS)

protein-containing complex binding (IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

ephrin - ephrin receptor bidirectional signaling axis (ISO)

platelet-derived growth factor signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Protein-tyrosine kinases regulate the phosphorylation, protein interactions, subcellular distribution, and activity of p21ras GTPase-activating protein.	Moran MF, etal., Mol Cell Biol. 1991 Apr;11(4):1804-12.
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	The function of the p190 Rho GTPase-activating protein is controlled by its N-terminal GTP binding domain.	Tatsis N, etal., J Biol Chem. 1998 Dec 18;273(51):34631-8.

Additional References at PubMed

PMID:1581965	PMID:1894621	PMID:7503985	PMID:11044403	PMID:11283609	PMID:15084284	PMID:15280098	PMID:16188938	PMID:16971514	PMID:17562701	PMID:18267090	PMID:18502760
PMID:19540230	PMID:19632305	PMID:19673492	PMID:20439493	PMID:21945077	PMID:22357865	PMID:23595732	PMID:26859289	PMID:27212270	PMID:27646271	PMID:30174148

Genomics

Comparative Map Data

Arhgap35
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	86,330,566 - 86,447,414 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	86,330,566 - 86,447,414 (-)	Ensembl				GRCr8
mRatBN7.2	1	77,202,436 - 77,319,298 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	77,202,436 - 77,319,298 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	82,576,527 - 82,693,394 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	91,140,568 - 91,257,426 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	84,331,623 - 84,448,478 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	78,456,409 - 78,573,374 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	78,456,409 - 78,573,374 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	79,703,650 - 79,820,568 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	76,757,031 - 76,824,155 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	71,687,713 - 71,804,603 (-)	NCBI		Celera
RGSC_v3.1	16	28,093,164 - 28,259,729 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

ARHGAP35
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	46,860,997 - 47,005,077 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	46,860,997 - 47,005,077 (+)	Ensembl			hg38	GRCh38
GRCh37	19	47,364,254 - 47,508,334 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	52,113,773 - 52,200,174 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	44,226,291 - 44,312,689 (+)	NCBI		Celera
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	43,846,727 - 43,932,756 (+)	NCBI		HuRef
CHM1_1	19	47,423,799 - 47,510,216 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	49,686,835 - 49,830,977 (+)	NCBI		T2T-CHM13v2.0

Arhgap35
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	16,228,398 - 16,349,313 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	16,227,644 - 16,348,918 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	16,494,473 - 16,614,993 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	16,493,719 - 16,614,993 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	17,079,822 - 17,200,342 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	15,653,561 - 15,773,515 (-)	NCBI		MGSCv36	mm8
Celera	7	13,691,036 - 13,812,194 (-)	NCBI		Celera
Cytogenetic Map	7	A2	NCBI
cM Map	7	9.15	NCBI

Arhgap35
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955574	915,325 - 984,744 (+)	Ensembl
ChiLan1.0	NW_004955574	915,604 - 984,744 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP35
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	53,006,784 - 53,151,982 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	54,878,676 - 55,023,271 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	43,850,692 - 43,994,487 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	52,435,379 - 52,521,104 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	52,435,379 - 52,521,104 (+)	Ensembl			panPan2	panpan1.1

ARHGAP35
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	108,952,836 - 109,034,329 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	108,952,562 - 109,034,337 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	108,432,475 - 108,561,300 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	109,473,916 - 109,607,035 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	109,476,089 - 109,607,038 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	109,144,987 - 109,284,705 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	108,789,454 - 108,918,490 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	109,657,989 - 109,786,942 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arhgap35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	19,095,903 - 19,170,964 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	713,984 - 789,344 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	714,036 - 788,584 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP35
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	52,711,901 - 52,841,288 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	52,711,463 - 52,841,295 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	48,200,461 - 48,215,323 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP35
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	40,264,466 - 40,353,157 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	40,205,892 - 40,353,280 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	19,911,593 - 20,059,133 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap35
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	6,650,383 - 6,719,786 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	6,650,383 - 6,773,828 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arhgap35
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	172,447,176 - 172,570,335 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arhgap35
1144 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	82
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000021223
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

BF405601

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	25,345,625 - 25,345,818 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	27,233,388 - 27,233,580	NCBI	Rnor6.0
Rnor_5.0	16	27,104,254 - 27,104,446	UniSTS	Rnor5.0
RGSC_v3.4	16	28,259,238 - 28,259,430	UniSTS	RGSC3.4
Celera	16	25,424,195 - 25,424,387	UniSTS
RH 3.4 Map	16	310.9	UniSTS
Cytogenetic Map	16	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH139289

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	77,215,083 - 77,215,205 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	78,469,056 - 78,469,177	NCBI	Rnor6.0
Rnor_5.0	1	79,716,297 - 79,716,418	UniSTS	Rnor5.0
RGSC_v3.4	1	76,769,659 - 76,769,780	UniSTS	RGSC3.4
Celera	1	71,700,199 - 71,700,320	UniSTS
RH 3.4 Map	1	789.5	UniSTS
Cytogenetic Map	1	q21	UniSTS

WI-9140

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	25,345,291 - 25,345,401 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	77,251,899 - 77,251,999 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	27,233,054 - 27,233,163	NCBI	Rnor6.0
Rnor_5.0	16	27,103,920 - 27,104,029	UniSTS	Rnor5.0
RGSC_v3.4	16	28,258,904 - 28,259,013	UniSTS	RGSC3.4
Celera	16	25,423,861 - 25,423,970	UniSTS
Cytogenetic Map	16	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH132160

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	77,202,653 - 77,202,835 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	78,456,627 - 78,456,808	NCBI	Rnor6.0
Rnor_5.0	1	79,703,868 - 79,704,049	UniSTS	Rnor5.0
RGSC_v3.4	1	76,754,454 - 76,754,635	UniSTS	RGSC3.4
Celera	1	71,687,931 - 71,688,112	UniSTS
RH 3.4 Map	1	769.8	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH134350

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	77,203,095 - 77,203,276 (+)	MAPPER	mRatBN7.2
mRatBN7.2	16	25,348,423 - 25,348,604 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	27,236,186 - 27,236,366	NCBI	Rnor6.0
Rnor_6.0	1	78,457,069 - 78,457,249	NCBI	Rnor6.0
Rnor_5.0	16	27,107,052 - 27,107,232	UniSTS	Rnor5.0
Rnor_5.0	1	79,704,310 - 79,704,490	UniSTS	Rnor5.0
RGSC_v3.4	1	76,754,896 - 76,755,076	UniSTS	RGSC3.4
RGSC_v3.4	16	28,262,036 - 28,262,216	UniSTS	RGSC3.4
Celera	16	25,426,994 - 25,427,174	UniSTS
Celera	1	71,688,373 - 71,688,553	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	16	p13	UniSTS

BE110269

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	25,346,773 - 25,346,947 (-)	MAPPER	mRatBN7.2
mRatBN7.2	16	25,346,773 - 25,346,947 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	77,204,783 - 77,204,957 (-)	MAPPER	mRatBN7.2
mRatBN7.2	1	77,204,783 - 77,204,957 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	78,458,757 - 78,458,930	NCBI	Rnor6.0
Rnor_6.0	16	27,234,536 - 27,234,709	NCBI	Rnor6.0
Rnor_5.0	1	79,705,998 - 79,706,171	UniSTS	Rnor5.0
Rnor_5.0	16	27,105,402 - 27,105,575	UniSTS	Rnor5.0
RGSC_v3.4	1	76,756,584 - 76,756,757	UniSTS	RGSC3.4
RGSC_v3.4	16	28,260,386 - 28,260,559	UniSTS	RGSC3.4
Celera	16	25,425,343 - 25,425,516	UniSTS
Celera	1	71,690,061 - 71,690,234	UniSTS
RH 3.4 Map	16	297.41	UniSTS
Cytogenetic Map	16	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH135367

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	77,290,998 - 77,291,200 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	78,544,961 - 78,545,162	NCBI	Rnor6.0
Rnor_5.0	1	79,792,202 - 79,792,403	UniSTS	Rnor5.0
RGSC_v3.4	1	76,847,422 - 76,847,623	UniSTS	RGSC3.4
Celera	1	71,776,347 - 71,776,548	UniSTS
RH 3.4 Map	1	790.7	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M94721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021223 ⟹ ENSRNOP00000021223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	78,459,543 - 78,521,999 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090519 ⟹ ENSRNOP00000075649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	86,330,566 - 86,447,414 (-)	Ensembl
mRatBN7.2 Ensembl	1	77,202,436 - 77,319,298 (-)	Ensembl
Rnor_6.0 Ensembl	1	78,456,409 - 78,573,374 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166864 ⟹ ENSRNOP00000103520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	86,332,145 - 86,447,414 (-)	Ensembl

RefSeq Acc Id:

NM_001271132 ⟹ NP_001258061

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	86,330,566 - 86,447,414 (-)	NCBI
mRatBN7.2	1	77,202,436 - 77,319,298 (-)	NCBI
Rnor_6.0	1	78,456,409 - 78,573,374 (-)	NCBI
Rnor_5.0	1	79,703,650 - 79,820,568 (-)	NCBI
Celera	1	71,687,713 - 71,804,603 (-)	NCBI

Sequence:

show sequence

GGTGTCCGTGCGTGCCTGTCCTCCTGGGCTACTGTCCTCGAGGTGCGCTTGGCCCTGTGGGCCG
TTATCCACCTTCCATCCCCCGCCCCAGCGCCTTTCGCCCCTCAGAAACGCACGCGCACTTGCGA
GAGGGTCTCCAGCACGCGCACGGCCGCGGCGGCCGCAGGAAGGAGGCGACAACGCCGCCGCCGC
CGCCATTGCGCGGGAGGGAGGGAGCGAGCGAGCGAGCGAGGCTGGTCCGCCCTCCCCCTGGTTC
CCGCCCCTCCCCCCTTCCCCTCCCCGCCCCCCCGCCCCGAGGGAGAGCCGCGGCGCGGCGGGAG
GAGGTGGAGGAGGCGGAGGAGGGAGCCCGCGAGGGAGGGTCCGCCCGGCCCCCCGCCGGAGCCG
CCACCGCCGCCTCAGCCGCCTCAGGAACGAGTCGCTAGGGGAACATGGCGCCGGGCCCGCCGTC
GCAGCGGCCGGGATCGCGGAGGCCGGGGCCGCGCTGAGGGCGCCCCCAAGGCTGGCAGACATGT
TGGCTATTTGTCGATGAGAAGTAGGAAGAACTGACATACTGGTTTAGAACACTATGGGACCTAA
CATTTGCGCTGCTTGGGCAGCCAGTGTCCACTGGCACTGCTAAGAAGCCCTCACTCTACTGCAG
AACACTAATCTGATCTTGGAAGTGGCTGTTTGTGGCAGGATGTTTCGAAGATGATGATGGCAAG
AAAGCAAGATGTCCGAATCCCCACCTACAACATCAGTGTGGTGGGATTGTCCGGCACTGAGAAG
GAGAAAGGCCAGTGCGGCATTGGGAAGTCTTGTCTATGTAACCGCTTTGTGCGCCCAAGTGCTG
ATGAGTTTCACCTGGACCACACTTCTGTCCTCAGCACCAGTGACTTTGGTGGGCGGGTGGTCAA
TAATGACCATTTTCTGTACTGGGGAGAAGTTAGCCGCTCCCTGGAGGACTGTGTGGAATGTAAG
ATGCACATTGTGGAGCAGACTGAGTTTATTGACGATCAGACTTTTCAACCTCATCGAAGCACGG
CACTGCAGCCCTACATCAAGAGAGCCGCAGCCACCAAGCTTGCTTCAGCTGAAAAACTCATGTA
TTTTTGCACTGACCAGCTAGGGCTGGAGCAAGACTTTGAGCAGAAACAGATGCCAGATGGGAAG
CTGCTGGTTGACGGTTTCCTTCTGGGCATCGATGTTAGCAGGGGCATGAACAGGAACTTCGATG
ACCAGCTCAAGTTTGTCTCCAATCTCTACAATCAGCTTGCAAAAACAAAAAAGCCCATAGTAAT
AGTCCTGACCAAGTGTGATGAGGGTGTTGAGCGGTACATTAGAGATGCACATACTTTTGCCTTA
AGCAAAAAGAACCTCCAGGTTGTAGAGACCTCTGCAAGGTCCAATGTGAATGTGGACTTGGCTT
TCAGCACCTTAGTGCAACTCATTGATAAGAGTCGAGGGAAGACGAAAATCATCCCTTACTTTGA
AGCTCTCAAGCAGCAGAGTCAGCAGATAGCTACAGCAAAGGACAAGTATGAGTGGTTGGTGAGC
CGCATTGTGAAAAGTCACAATGAGAACTGGCTGAGTGTCAGCCGAAAGATGCAGGCCTCCCCTG
AGTACCAGGACTATGTCTATCTGGAAGGGACACAGAAAGCCAAGAAGCTCTTCCTGCAGCACAT
TCACCGCCTCAAGCATGAGCATATTGAGCGCCGGAGAAAGCTGTACCTGGCAGCCCTGCCATTG
GCTTTTGAAGCCCTCATACCTAATCTAGATGAAGTAGACCACCTGAGCTGCATTAAAGCAAAAA
AGCTGTTAGAGACTAAGCCAGAGTTCTTAAAGTGGTTTGTTGTACTTGAAGAGACACCATGGGA
TGAAACCAGCCACATTGACAACATGGAAAATGAGCGGATTCCCTTTGACTTGATGGATACTGTC
CCTGCTGAGCAGTTGTATGAGACCCACTTGGAGAAGCTGAGGAATGAGAGGAAGAGAGCTGAGA
TGCGAAGGGCTTTCAAAGAAAACCTGGAGACCTCTCCTTTCATAACTCCTGGGAAACCTTGGGA
AGAAGCTCGTAGTTTTATTATGAATGAAGACTTCTACCAGTGGCTGGAAGAATCTGTGTACATG
GACATCTATGGCAAGCACCAAAAGCAGATTATAGACCGGGCAAAGGAAGAGTTCCAAGAGTTGC
TTTTGGAGTATTCAGAATTGTTTTATGAGCTGGAGCTGGATGCTAAACCCAGTAAGGAAAAGAT
GGGTGTTATCCAGGATGTTCTGGGTGAAGAGCAACGATTTAAAGCATTGCAGAAACTCCAAGCA
GAGCGTGATGCCCTCATTCTGAAGCACATTCATTTTGTGTACCACCCAACAAAGGAGACATGCC
CAAGCTGTCCAGCTTGCGTAGATGCTAAGATTGAACATTTGATCAGTTCTCGCTTTATCCGACC
ATCTGATAGGAATCAGAAGAACTCTTTGTCTGACCCCAATATTGATAGGATCAATTTGGTTATT
TTAGGCAAAGATGGCCTTGCCCGAGAGTTAGCCAATGAAATTCGAGCTCTTTGTACAAATGATG
ACAAGTATGTAATAGATGGTAAAATGTATGAGCTTTCTCTGAGGCCAATAGAGGGGAATGTTCG
GCTTCCTGTGAACTCTTTCCAGACACCAACCTTCCAACCCCATGGCTGTCTCTGCCTTTACAAT
TCAAAGGAGTCGCTGTCCTATGTGGTGGAGAGTATAGAGAAGAGCAGAGAATCTACACTGGGCA
GGCGGGATAATCACTTAGTCCACCTCCCCTTGACTTTAATTTTAGTTAACAAGAGAGGGGACAC
AAGTGGAGAGACTCTGCACAGCTTAATACAGCAAGGCCAGCAGATTGCTAGCAAACTTCAGTGT
GTCTTTCTTGATCCTGCGTCTGCTGGCATTGGTTATGGACGCAACATTAACGAGAAGCAGATCA
GTCAAGTTCTGAAGGGACTCCTGGACTCTAAGCGCAACTTAAACCTGGTTAGTTCTACTGCTAG
TATCAAAGATTTGGCTGATGTGGACCTTCGAATTGTCATGTGTCTCATGTGTGGTGATCCTTTT
AGTGCAGATGACATTCTCTCTCCTGTCCTGCAGTCCCAAACTTGTAAATCTTCCCACTGTGGGA
GCAGCAACTCTGTTTTACTTGAACTTCCAATTGGAGTACACAAGAAGCGCATTGAGCTGTCTGT
TCTTTCATACCATTCCTCATTTAGCATCCGAAAGAGCCGGTTGGTTCATGGGTACATTGTTTTT
TATTCAGCCAAACGTAAGGCCTCCTTGGCAATGTTACGTGCCTTTCTTTGTGAAGTGCAGGATA
TTATCCCCATCCAGCTTGTCGCACTCACTGATGGCGCTATAGATGTCCTGGACAATGACTTAAG
TCGAGAGCAGCTAACAGAGGGAGAGGAAATTGCACAAGAAATTGATGGGAGATTCACAAGCATC
CCTTGTAGCCAGCCCCAGCATAAACTCGAGCTCTTCCATCCCTTTTTTAAAGATGTGGTGGAGA
AAAAGAACATAATCGAGGCCACACACATGTACGATAATGTGGCTGAGGCCTGCAGCACCACTGA
GGAGGTATTCAACTCCCCCAGGGCTGGGTCACCCCTCTGCAATTCAAACTTACAGGACTCAGAA
GAAGATGTGGAGCCTCCATCGTACCACCTTTTTCGGGAAGATGCGACATTGCCCTCCCTGTCCA
AAGATCATTCCAAGTTCTCAATGGAGCTGGAGGGAAACGACGGGCTGTCTTTCATAATGAGCAA
CTTTGAGAGTAAACTGAACAACAAAGTACCTCCACCAGTCAAACCAAAGCCTCCTGTGCATTTT
GAGATCACAAAAGATCTTTCTTACTTAGACCAAGGTCATCGGGAGGGACAGAGGAAGTCTATGT
CTTCTAGCCCCTGGATGCCTCAGGATGGATTTGATCCTTCTGACTACGCAGAGCCCATGGATGC
TGTGGTCAAGCCAAGGAATGAGGAAGAAAACATATACTCAGTGCCCCACGACAGCACCCAGGGC
AAGATCATTACCATTCGGAACATCAACAAAGCCCAGTCCAATGGCAGTGGCAATGGTTCTGACA
GTGAGATGGACACAAGCTCTCTAGAGCGAGGCCGCAAAGTATCTGCAGTGAGTAAGCCTGTGCT
GTACAGGACGAGATGCACCCGCCTGGGGCGGTTTGCTAGTTACCGCACCAGCTTCAGTGTTGGG
AGTGATGATGAGCTGGGACCCATCCGAAAGAAAGAGGAGGACCAGGCATCCCAAGGTTATAAAG
GGGACAATGCTGTCATTCCTTATGAAACAGATGAGGACCCCAGGAGGAGGAATATCCTTCGAAG
TCTAAGGAGGAACACCAAGAAACCAAAGCCCAAACCCCGACCATCCATCACAAAGGCAACCTGG
GAGAGTAACTATTTTGGGGTGCCTTTAACAACAGTGGTGACTCCAGAGAAGCCGATACCCATTT
TCATTGAAAGATGCATTGAGTACATTGAAGCCACAGGACTAAGCACAGAAGGCATCTACCGGGT
CAGCGGAAACAAGTCAGAAATGGAAAGTTTGCAAAGACAGTTTGATCAAGATCACAATCTGGAC
CTGGCAGAGAAAGACTTCACTGTGAACACTGTGGCAGGGGCCATGAAGAGTTTTTTCTCGGAGC
TACCAGACCCCCTGGTACCATACAGCATGCAGATTGACTTGGTGGAAGCTCACAAGATCAACGA
CAGGGAGCAGAAGCTGCATGCTCTGAAGGAAGTGCTGAAGAAGTTCCCTAAGGAGAACCATGAA
GTCTTCAAATATGTCATCTCCCACCTGAACAGAGTCAGCCACAACAACAAGGTGAATCTTATGA
CCAGTGAGAACCTGTCCATCTGCTTCTGGCCCACGTTGATGCGGCCTGACTTCAGCAGCATGGA
CGCACTCACAGCCACTCGATCCTACCAGACCATCATCGAGCTCTTCATCCAGCAGTGCCCCTTC
TTCTTCTACAACCGGCCGATCAGTGAGCCACCGGGGGCTGCGCCTGGCTCCCCTTCAGCCATGG
CACCCACTGTCCCCTTCCTCACCTCTACACCTGCTACCAGTCAGCCATCACCTCCCCAGTCACC
TCCTCCAACCCCTCAGTCCCCAATGCAGCCATTGCTCTCCTCTCAGCTCCAAGCCGAACACACG
CTGTGAGCCACCACAGCCCAGGAAGCAGGAAAATCAGTTGTCTTCTTGACAGGGTGGCATTTGG
CCTTGAACAAAATCAGGTCTCCTGGGGTGGAGCTCACAGCCAAGCGCCTTTTTAAGACTTCAGT
GGCAGCACCAGCCAGTGTCCACCACTGCTGGGCAGTTGAGCCCTGCTGTTCGTTTACCTGCCCT
GGCTATGGCTGTGGCAAGCTCTTAGGCCCCGCCTTGGTCTGGGCCAATCTGAGAACTGAACTGA
CCAGATGGCGGCCCCATCACCCTTACTGCTCCTTGGACCCCTTGGCCCAACCCGTTTGCCTGCA
CCAGCGTCAGGCCCCACCGTCAGGACATCACCCCAGCCTCTGCCAGGGGCAGAGGTAACCCCAG
CAGGGCTGGCCCCTCTACAGAGGACGTTTCCCAGTTTGTCCTCTCTCATCATCCACACACATAC
CTGCAACGGGGTCTTGGGGACATGTGGGCTATGGCTCTGCTACCCCATGGGACACACTGGGGCA
CTGGCATGGCCCAACAGCACAGCAAGAGGAGAGCTTTGTGCCTAGACCCAGTGTGTGGCTTTCC
TCCAACCCCTTCCCAGGCTTCTGATCCATTCCCTGCCGCAAAGGAACACTGGAAGAAAGATGGA
CTCCTCCACAGAGACAGAAAGACCGAAATCACGGAAAGAAAACAGACCTCAAGTTTCCACTCCC
ACCTGCCAGGTGGCCACTGGGTAACAATCCCCTTTGTCTATGTGTGACAGCAAAGTAAGGACAC
CTGGGCAGTTACTACAAACACAGACCCCAACCCCTACCCCCAGAGAAGACAGAGCCCTTGGAAA
GATTATTAGCACGGCCCCTGCCCCTGCTGCCAACCAACACACTACATACATACATACATACACT
ACTATAGAAACACTGCAGGCGTGTGCACACAGCACCCAGGTTGGCGTGTTTGGTTTGAAGTGGG
GTCATTTCATCCCATGCTGTGAATGAACCAGAAAAAGGTGTCTGGGATATGAGCAGGCATAGCA
CCTTCCAGAAATGATGAACTGGCTATGGAATGAGGGATCCTGTTCTTAGGCACAGGTACCCATG
CCTGGCTTGTTGTCACACTGACCAGCCCTGACACTTCCCCCAGCAGCCTCCCCATACTCCTCCT
GATATGGCAGCCCTTGTGGGCTCTTGCCTTTGCCCCCACTTTAATCTAAGCACTGGGCCATGAA
ATCTGACACTAAGGTACCCTGAGCATAGGAGGGGCATGGGTCGCACCATTGCACTTTAGAAATA
GCATGTGGGAGTGTTCCCAAGGGCCTCAGGTGGCCTGCCACCCTGCCTTTACCTCTGTAGGACA
AGAGAAGGATGCCTGGCCTCTGGCCTAGGGTCCTGCCCTAGAGAAGCTGGCTGTCTCCCTATCT
CTAGTACTTGGCAACATAAGGTGCTTGCAAACACTAAGGCTGCCCCCTGCAAAGTAATCTCCAA
GACAAAACCAAACGCAAGGTACAAATGTGTTATACGTAAGTGTCTCCCTTCCTGGGGGTCTGTG
TCGGGTGCTGTGGCCTGGAATCAATAGGAGCATAATGTGTGTAGTGCCCACTAAGGTTGCAGTC
CGTCCTCTGCCCTGACTTCATGCCCCAAGCCTCAGCTATTGAAATGGCTTCCATTCAGTAGCTT
CTGTGTTGGGTCTTTGCAGAGATGGAATTGGAGCCATCCTGCTGTGAACAGAGTTATGAACCCA
TCTATGAGGCTGCTGCCTATTATGTCGACAGGGCAGTGGGTGGCAGACAGAGGTAGGCACATGG
CTAGTAGAGCCCTGCTTGGAGCTCACTTCTGCTTCAGGCACTCTAAGTGACCTTCCCACTCATG
ACAAGCCAACTGGGGAACTACAGACGACAGAGCACTCAGGGCTTCAGTAGATGGCAGGTCAGCT
GCTGCCCTACCCAGAAAGTAGCCCTGGAGGTGACCACAACCTGGCACCACCCAACATTACCACG
GGGCCCAGGGCTGGGTTTCGAGTTTCACACTGGGTAGTATGCATTCCTTCTGCACTGTCCCATC
CTTCTCACCTCAACCTTTTAAGGGATATGGAAAGGTCTGGTGCTCTGTCTTCCCCCACGCTCTC
CATTTTCTCCAGCCAATGCAGGCAGCAGCAGTAACAGACTTCTTAGAACCTTCACACTGTATCT
ACCACTACATAGGGTGACAAAAGAGCAACTTGTAGGCCAGAGGGGTGGGGTGAGCCCTCCTGTG
GTCTGTACCTCCACCCCTGGTCTAGCGGGAGGAATCCTTGAAGACCTGCATCACCTAAGTGAGG
ACCCTACAGGGTACCTTATGCTCTGCTCCCAGACCCTGACTTAACATTGGGCCAACAACGATCC
TCATCCCCCAAAGTCATCTACAGATGGCAGGTGGAAGAGGGAGGTTCTCCATTCCACACCCACT
ACCAGTGTGCATGGGGAGGGAATGGGGATGAACTAGGTCAATCCAGGGACACTAGAGAGGCTAA
GGCTCTAGCCCTATTACCCAGCCATGAAGCCACCCAAGTAGTGGAGCCAGGACATAAGTTATTG
TTCACATTAAAGAATCATGTTCCCTGTGTACATTTTAAGCAAAGAAAAGTCTTGGGATTGTATG
GGAATAAAACTTGTTTGAAAATTTGGAATAGTGCTGTTGTCGGCTTATTTTTCTGGTACTTGTA
TTTTCACATGTTAAATGATCTTTATATGTGTTGGATTAACAAGTATTTTGAGTTTTCTGAGAAC
AAACAGAAACATTAATGGTATTGAAGTGTGTTAGTAGTCTGGCCGTGTGCCCAAACTTCTGTTT
TGCAGCAAAAGTGGAAACCTGTCTGTACAGCGAGTGTAATGATTTCCTGTATCGTGGCTCAAAC
CAGGGCCTCTCTAGTTGCTGTTAGCAATGTCTGCTTCGTTTCCAGGCTTTTTTAAAAAACACAT
CATGGGTTTCTGAGGCTCCAGCCTGTTTAGTGCATGCAGCCATCACGGCAGCCAAGCATCTCTG
AGTGAGGTGTTTTTGTTTGGTTTTGGTTTTTAAGATCATGTATTTGCTACAAAGTATTGTACTT
GTCTCAATGGGAATGGTATAAAAAAAAAGAAAAGAAAAGGCCTTATGTGATATGTACCATAGTT
AATAAATCAATCTTGTAAAAAACATAAATAAAAACAGGCCTGAG

hide sequence

RefSeq Acc Id:

XM_008758919 ⟹ XP_008757141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	86,331,094 - 86,447,051 (-)	NCBI
mRatBN7.2	1	77,202,452 - 77,292,695 (-)	NCBI
Rnor_6.0	1	78,456,637 - 78,546,651 (-)	NCBI

Sequence:

show sequence

ACAGCCTGGAAAGCACCAAGAGGCAAGCATCATGTTCTCTAAGGTGTCCATCTCATGAAGCATT
TCTTTCTCATGGAAAATGGAGCCTGCAGGTGTCTGATGAAGGGCCATTAGTATGAGGCAGACAT
GTTGGCTATTTGTCGATGAGAAGTAGGAAGAACTGACATACTGGTTTAGAACACTATGGGACCT
AACATTTGCGCTGCTTGGGCAGCCAGTGTCCACTGGCACTGCTAAGAAGCCCTCACTCTACTGC
AGAACACTAATCTGATCTTGGAAGTGGCTGTTTGTGGCAGGATGTTTCGAAGATGATGATGGCA
AGAAAGCAAGATGTCCGAATCCCCACCTACAACATCAGTGTGGTGGGATTGTCCGGCACTGAGA
AGGAGAAAGGCCAGTGCGGCATTGGGAAGTCTTGTCTATGTAACCGCTTTGTGCGCCCAAGTGC
TGATGAGTTTCACCTGGACCACACTTCTGTCCTCAGCACCAGTGACTTTGGTGGGCGGGTGGTC
AATAATGACCATTTTCTGTACTGGGGAGAAGTTAGCCGCTCCCTGGAGGACTGTGTGGAATGTA
AGATGCACATTGTGGAGCAGACTGAGTTTATTGACGATCAGACTTTTCAACCTCATCGAAGCAC
GGCACTGCAGCCCTACATCAAGAGAGCCGCAGCCACCAAGCTTGCTTCAGCTGAAAAACTCATG
TATTTTTGCACTGACCAGCTAGGGCTGGAGCAAGACTTTGAGCAGAAACAGATGCCAGATGGGA
AGCTGCTGGTTGACGGTTTCCTTCTGGGCATCGATGTTAGCAGGGGCATGAACAGGAACTTCGA
TGACCAGCTCAAGTTTGTCTCCAATCTCTACAATCAGCTTGCAAAAACAAAAAAGCCCATAGTA
ATAGTCCTGACCAAGTGTGATGAGGGTGTTGAGCGGTACATTAGAGATGCACATACTTTTGCCT
TAAGCAAAAAGAACCTCCAGGTTGTAGAGACCTCTGCAAGGTCCAATGTGAATGTGGACTTGGC
TTTCAGCACCTTAGTGCAACTCATTGATAAGAGTCGAGGGAAGACGAAAATCATCCCTTACTTT
GAAGCTCTCAAGCAGCAGAGTCAGCAGATAGCTACAGCAAAGGACAAGTATGAGTGGTTGGTGA
GCCGCATTGTGAAAAGTCACAATGAGAACTGGCTGAGTGTCAGCCGAAAGATGCAGGCCTCCCC
TGAGTACCAGGACTATGTCTATCTGGAAGGGACACAGAAAGCCAAGAAGCTCTTCCTGCAGCAC
ATTCACCGCCTCAAGCATGAGCATATTGAGCGCCGGAGAAAGCTGTACCTGGCAGCCCTGCCAT
TGGCTTTTGAAGCCCTCATACCTAATCTAGATGAAGTAGACCACCTGAGCTGCATTAAAGCAAA
AAAGCTGTTAGAGACTAAGCCAGAGTTCTTAAAGTGGTTTGTTGTACTTGAAGAGACACCATGG
GATGAAACCAGCCACATTGACAACATGGAAAATGAGCGGATTCCCTTTGACTTGATGGATACTG
TCCCTGCTGAGCAGTTGTATGAGACCCACTTGGAGAAGCTGAGGAATGAGAGGAAGAGAGCTGA
GATGCGAAGGGCTTTCAAAGAAAACCTGGAGACCTCTCCTTTCATAACTCCTGGGAAACCTTGG
GAAGAAGCTCGTAGTTTTATTATGAATGAAGACTTCTACCAGTGGCTGGAAGAATCTGTGTACA
TGGACATCTATGGCAAGCACCAAAAGCAGATTATAGACCGGGCAAAGGAAGAGTTCCAAGAGTT
GCTTTTGGAGTATTCAGAATTGTTTTATGAGCTGGAGCTGGATGCTAAACCCAGTAAGGAAAAG
ATGGGTGTTATCCAGGATGTTCTGGGTGAAGAGCAACGATTTAAAGCATTGCAGAAACTCCAAG
CAGAGCGTGATGCCCTCATTCTGAAGCACATTCATTTTGTGTACCACCCAACAAAGGAGACATG
CCCAAGCTGTCCAGCTTGCGTAGATGCTAAGATTGAACATTTGATCAGTTCTCGCTTTATCCGA
CCATCTGATAGGAATCAGAAGAACTCTTTGTCTGACCCCAATATTGATAGGATCAATTTGGTTA
TTTTAGGCAAAGATGGCCTTGCCCGAGAGTTAGCCAATGAAATTCGAGCTCTTTGTACAAATGA
TGACAAGTATGTAATAGATGGTAAAATGTATGAGCTTTCTCTGAGGCCAATAGAGGGGAATGTT
CGGCTTCCTGTGAACTCTTTCCAGACACCAACCTTCCAACCCCATGGCTGTCTCTGCCTTTACA
ATTCAAAGGAGTCGCTGTCCTATGTGGTGGAGAGTATAGAGAAGAGCAGAGAATCTACACTGGG
CAGGCGGGATAATCACTTAGTCCACCTCCCCTTGACTTTAATTTTAGTTAACAAGAGAGGGGAC
ACAAGTGGAGAGACTCTGCACAGCTTAATACAGCAAGGCCAGCAGATTGCTAGCAAACTTCAGT
GTGTCTTTCTTGATCCTGCGTCTGCTGGCATTGGTTATGGACGCAACATTAACGAGAAGCAGAT
CAGTCAAGTTCTGAAGGGACTCCTGGACTCTAAGCGCAACTTAAACCTGGTTAGTTCTACTGCT
AGTATCAAAGATTTGGCTGATGTGGACCTTCGAATTGTCATGTGTCTCATGTGTGGTGATCCTT
TTAGTGCAGATGACATTCTCTCTCCTGTCCTGCAGTCCCAAACTTGTAAATCTTCCCACTGTGG
GAGCAGCAACTCTGTTTTACTTGAACTTCCAATTGGAGTACACAAGAAGCGCATTGAGCTGTCT
GTTCTTTCATACCATTCCTCATTTAGCATCCGAAAGAGCCGGTTGGTTCATGGGTACATTGTTT
TTTATTCAGCCAAACGTAAGGCCTCCTTGGCAATGTTACGTGCCTTTCTTTGTGAAGTGCAGGA
TATTATCCCCATCCAGCTTGTCGCACTCACTGATGGCGCTATAGATGTCCTGGACAATGACTTA
AGTCGAGAGCAGCTAACAGAGGGAGAGGAAATTGCACAAGAAATTGATGGGAGATTCACAAGCA
TCCCTTGTAGCCAGCCCCAGCATAAACTCGAGCTCTTCCATCCCTTTTTTAAAGATGTGGTGGA
GAAAAAGAACATAATCGAGGCCACACACATGTACGATAATGTGGCTGAGGCCTGCAGCACCACT
GAGGAGGTATTCAACTCCCCCAGGGCTGGGTCACCCCTCTGCAATTCAAACTTACAGGACTCAG
AAGAAGATGTGGAGCCTCCATCGTACCACCTTTTTCGGGAAGATGCGACATTGCCCTCCCTGTC
CAAAGATCATTCCAAGTTCTCAATGGAGCTGGAGGGAAACGACGGGCTGTCTTTCATAATGAGC
AACTTTGAGAGTAAACTGAACAACAAAGTACCTCCACCAGTCAAACCAAAGCCTCCTGTGCATT
TTGAGATCACAAAAGATCTTTCTTACTTAGACCAAGGTCATCGGGAGGGACAGAGGAAGTCTAT
GTCTTCTAGCCCCTGGATGCCTCAGGATGGATTTGATCCTTCTGACTACGCAGAGCCCATGGAT
GCTGTGGTCAAGCCAAGGAATGAGGAAGAAAACATATACTCAGTGCCCCACGACAGCACCCAGG
GCAAGATCATTACCATTCGGAACATCAACAAAGCCCAGTCCAATGGCAGTGGCAATGGTTCTGA
CAGTGAGATGGACACAAGCTCTCTAGAGCGAGGCCGCAAAGTATCTGCAGTGAGTAAGCCTGTG
CTGTACAGGACGAGATGCACCCGCCTGGGGCGGTTTGCTAGTTACCGCACCAGCTTCAGTGTTG
GGAGTGATGATGAGCTGGGACCCATCCGAAAGAAAGAGGAGGACCAGGCATCCCAAGGTTATAA
AGGGGACAATGCTGTCATTCCTTATGAAACAGATGAGGACCCCAGGAGGAGGAATATCCTTCGA
AGTCTAAGGAGGAACACCAAGAAACCAAAGCCCAAACCCCGACCATCCATCACAAAGGCAACCT
GGGAGAGTAACTATTTTGGGGTGCCTTTAACAACAGTGGTGACTCCAGAGAAGCCGATACCCAT
TTTCATTGAAAGATGCATTGAGTACATTGAAGCCACAGGACTAAGCACAGAAGGCATCTACCGG
GTCAGCGGAAACAAGTCAGAAATGGAAAGTTTGCAAAGACAGTTTGATCAAGATCACAATCTGG
ACCTGGCAGAGAAAGACTTCACTGTGAACACTGTGGCAGGGGCCATGAAGAGTTTTTTCTCGGA
GCTACCAGACCCCCTGGTACCATACAGCATGCAGATTGACTTGGTGGAAGCTCACAAGATCAAC
GACAGGGAGCAGAAGCTGCATGCTCTGAAGGAAGTGCTGAAGAAGTTCCCTAAGGAGAACCATG
AAGTCTTCAAATATGTCATCTCCCACCTGAACAGAGTCAGCCACAACAACAAGGTGAATCTTAT
GACCAGTGAGAACCTGTCCATCTGCTTCTGGCCCACGTTGATGCGGCCTGACTTCAGCAGCATG
GACGCACTCACAGCCACTCGATCCTACCAGACCATCATCGAGCTCTTCATCCAGCAGTGCCCCT
TCTTCTTCTACAACCGGCCGATCAGTGAGCCACCGGGGGCTGCGCCTGGCTCCCCTTCAGCCAT
GGCACCCACTGTCCCCTTCCTCACCTCTACACCTGCTACCAGTCAGCCATCACCTCCCCAGTCA
CCTCCTCCAACCCCTCAGTCCCCAATGCAGCCATTGCTCTCCTCTCAGCTCCAAGCCGAACACA
CGCTGTGAGCCACCACAGCCCAGGAAGCAGGAAAATCAGTTGTCTTCTTGACAGGGTGGCATTT
GGCCTTGAACAAAATCAGGTCTCCTGGGGTGGAGCTCACAGCCAAGCGCCTTTTTAAGACTTCA
GTGGCAGCACCAGCCAGTGTCCACCACTGCTGGGCAGTTGAGCCCTGCTGTTCGTTTACCTGCC
CTGGCTATGGCTGTGGCAAGCTCTTAGGCCCCGCCTTGGTCTGGGCCAATCTGAGAACTGAACT
GACCAGATGGCGGCCCCATCACCCTTACTGCTCCTTGGACCCCTTGGCCCAACCCGTTTGCCTG
CACCAGCGTCAGGCCCCACCGTCAGGACATCACCCCAGCCTCTGCCAGGGGCAGAGGTAACCCC
AGCAGGGCTGGCCCCTCTACAGAGGACGTTTCCCAGTTTGTCCTCTCTCATCATCCACACACAT
ACCTGCAACGGGGTCTTGGGGACATGTGGGCTATGGCTCTGCTACCCCATGGGACACACTGGGG
CACTGGCATGGCCCAACAGCACAGCAAGAGGAGAGCTTTGTGCCTAGACCCAGTGTGTGGCTTT
CCTCCAACCCCTTCCCAGGCTTCTGATCCATTCCCTGCCGCAAAGGAACACTGGAAGAAAGATG
GACTCCTCCACAGAGACAGAAAGACCGAAATCACGGAAAGAAAACAGACCTCAAGTTTCCACTC
CCACCTGCCAGGTGGCCACTGGGTAACAATCCCCTTTGTCTATGTGTGACAGCAAAGTAAGGAC
ACCTGGGCAGTTACTACAAACACAGACCCCAACCCCTACCCCCAGAGAAGACAGAGCCCTTGGA
AAGATTATTAGCACGGCCCCTGCCCCTGCTGCCAACCAACACACTACATACATACATACATACA
CTACTATAGAAACACTGCAGGCGTGTGCACACAGCACCCAGGTTGGCGTGTTTGGTTTGAAGTG
GGGTCATTTCATCCCATGCTGTGAATGAACCAGAAAAAGGTGTCTGGGATATGAGCAGGCATAG
CACCTTCCAGAAATGATGAACTGGCTATGGAATGAGGGATCCTGTTCTTAGGCACAGGTACCCA
TGCCTGGCTTGTTGTCACACTGACCAGCCCTGACACTTCCCCCAGCAGCCTCCCCATACTCCTC
CTGATATGGCAGCCCTTGTGGGCTCTTGCCTTTGCCCCCACTTTAATCTAAGCACTGGGCCATG
AAATCTGACACTAAGGTACCCTGAGCATAGGAGGGGCATGGGTCGCACCATTGCACTTTAGAAA
TAGCATGTGGGAGTGTTCCCAAGGGCCTCAGGTGGCCTGCCACCCTGCCTTTACCTCTGTAGGA
CAAGAGAAGGATGCCTGGCCTCTGGCCTAGGGTCCTGCCCTAGAGAAGCTGGCTGTCTCCCTAT
CTCTAGTACTTGGCAACATAAGGTGCTTGCAAACACTAAGGCTGCCCCCTGCAAAGTAATCTCC
AAGACAAAACCAAACGCAAGGTACAAATGTGTTATACGTAAGTGTCTCCCTTCCTGGGGGTCTG
TGTCGGGTGCTGTGGCCTGGAATCAATAGGAGCATAATGTGTGTAGTGCCCACTAAGGTTGCAG
TCCGTCCTCTGCCCTGACTTCATGCCCCAAGCCTCAGCTATTGAAATGGCTTCCATTCAGTAGC
TTCTGTGTTGGGTCTTTGCAGAGATGGAATTGGAGCCATCCTGCTGTGAACAGAGTTATGAACC
CATCTATGAGGCTGCTGCCTATTATGTCGACAGGGCAGTGGGTGGCAGACAGAGGTAGGCACAT
GGCTAGTAGAGCCCTGCTTGGAGCTCACTTCTGCTTCAGGCACTCTAAGTGACCTTCCCACTCA
TGACAAGCCAACTGGGGAACTACAGACGACAGAGCACTCAGGGCTTCAGTAGATGGCAGGTCAG
CTGCTGCCCTACCCAGAAAGTAGCCCTGGAGGTGACCACAACCTGGCACCACCCAACATTACCA
CGGGGCCCAGGGCTGGGTTTCGAGTTTCACACTGGGTAGTATGCATTCCTTCTGCACTGTCCCA
TCCTTCTCACCTCAACCTTTTAAGGGATATGGAAAGGTCTGGTGCTCTGTCTTCCCCCACGCTC
TCCATTTTCTCCAGCCAATGCAGGCAGCAGCAGTAACAGACTTCTTAGAACCTTCACACTGTAT
CTACCACTACATAGGGTGACAAAAGAGCAACTTGTAGGCCAGAGGGGTGGGGTGAGCCCTCCTG
TGGTCTGTACCTCCACCCCTGGTCTAGCGGGAGGAATCCTTGAAGACCTGCATCACCTAAGTGA
GGACCCTACAGGGTACCTTATGCTCTGCTCCCAGACCCTGACTTAACATTGGGCCAACAACGAT
CCTCATCCCCCAAAGTCATCTACAGATGGCAGGTGGAAGAGGGAGGTTCTCCATTCCACACCCA
CTACCAGTGTGCATGGGGAGGGAATGGGGATGAACTAGGTCAATCCAGGGACACTAGAGAGGCT
AAGGCTCTAGCCCTATTACCCAGCCATGAAGCCACCCAAGTAGTGGAGCCAGGACATAAGTTAT
TGTTCACATTAAAGAATCATGTTCCCTGTGTACATTTTAAGCAAAGAAAAGTCTTGGGATTGTA
TGGGAATAAAACTTGTTTGAAAATTTGGAATAGTGCTGTTGTCGGCTTATTTTTCTGGTACTTG
TATTTTCACATGTTAAATGATCTTTATATGTGTTGGATTAACAAGTATTTTGAGTTTTCTGAGA
ACAAACAGAAACATTAATGGTATTGAAGTGTGTTAGTAGTCTGGCCGTGTGCCCAAACTTCTGT
TTTGCAGCAAAAGTGGAAACCTGTCTGTACAGCGAGTGTAATGATTTCCTGTATCGTGGCTCAA
ACCAGGGCCTCTCTAGTTGCTGTTAGCAATGTCTGCTTCGTTTCCAGGCTTTTTTAAAAAACAC
ATCATGGGTT

hide sequence

RefSeq Acc Id:

XM_039110038 ⟹ XP_038965966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	86,331,094 - 86,447,050 (-)	NCBI
mRatBN7.2	1	77,202,506 - 77,318,980 (-)	NCBI

RefSeq Acc Id:

XM_063288062 ⟹ XP_063144132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	86,331,094 - 86,447,050 (-)	NCBI

RefSeq Acc Id:

XM_063288066 ⟹ XP_063144136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	86,331,094 - 86,447,050 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258061	(Get FASTA)	NCBI Sequence Viewer
	XP_008757141	(Get FASTA)	NCBI Sequence Viewer
	XP_038965966	(Get FASTA)	NCBI Sequence Viewer
	XP_063144132	(Get FASTA)	NCBI Sequence Viewer
	XP_063144136	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000075649
	ENSRNOP00000075649.1
GenBank Protein	P81128	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001258061 ⟸ NM_001271132

- UniProtKB:

A0A0G2KB46 (UniProtKB/Swiss-Prot), P81128 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MMMARKQDVRIPTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFG
GRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA
EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK
KPIVIVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLIDKSRGKTKI
IPYFEALKQQSQQIATAKDKYEWLVSRIVKSHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKL
FLQHIHRLKHEHIERRRKLYLAALPLAFEALIPNLDEVDHLSCIKAKKLLETKPEFLKWFVVLE
ETPWDETSHIDNMENERIPFDLMDTVPAEQLYETHLEKLRNERKRAEMRRAFKENLETSPFITP
GKPWEEARSFIMNEDFYQWLEESVYMDIYGKHQKQIIDRAKEEFQELLLEYSELFYELELDAKP
SKEKMGVIQDVLGEEQRFKALQKLQAERDALILKHIHFVYHPTKETCPSCPACVDAKIEHLISS
RFIRPSDRNQKNSLSDPNIDRINLVILGKDGLARELANEIRALCTNDDKYVIDGKMYELSLRPI
EGNVRLPVNSFQTPTFQPHGCLCLYNSKESLSYVVESIEKSRESTLGRRDNHLVHLPLTLILVN
KRGDTSGETLHSLIQQGQQIASKLQCVFLDPASAGIGYGRNINEKQISQVLKGLLDSKRNLNLV
SSTASIKDLADVDLRIVMCLMCGDPFSADDILSPVLQSQTCKSSHCGSSNSVLLELPIGVHKKR
IELSVLSYHSSFSIRKSRLVHGYIVFYSAKRKASLAMLRAFLCEVQDIIPIQLVALTDGAIDVL
DNDLSREQLTEGEEIAQEIDGRFTSIPCSQPQHKLELFHPFFKDVVEKKNIIEATHMYDNVAEA
CSTTEEVFNSPRAGSPLCNSNLQDSEEDVEPPSYHLFREDATLPSLSKDHSKFSMELEGNDGLS
FIMSNFESKLNNKVPPPVKPKPPVHFEITKDLSYLDQGHREGQRKSMSSSPWMPQDGFDPSDYA
EPMDAVVKPRNEEENIYSVPHDSTQGKIITIRNINKAQSNGSGNGSDSEMDTSSLERGRKVSAV
SKPVLYRTRCTRLGRFASYRTSFSVGSDDELGPIRKKEEDQASQGYKGDNAVIPYETDEDPRRR
NILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTE
GIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEA
HKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLMRPD
FSSMDALTATRSYQTIIELFIQQCPFFFYNRPISEPPGAAPGSPSAMAPTVPFLTSTPATSQPS
PPQSPPPTPQSPMQPLLSSQLQAEHTL

hide sequence

RefSeq Acc Id:	XP_008757141 ⟸ XM_008758919
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KB46 (UniProtKB/Swiss-Prot), P81128 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMMARKQDVRIPTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFG GRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK KPIVIVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLIDKSRGKTKI IPYFEALKQQSQQIATAKDKYEWLVSRIVKSHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKL FLQHIHRLKHEHIERRRKLYLAALPLAFEALIPNLDEVDHLSCIKAKKLLETKPEFLKWFVVLE ETPWDETSHIDNMENERIPFDLMDTVPAEQLYETHLEKLRNERKRAEMRRAFKENLETSPFITP GKPWEEARSFIMNEDFYQWLEESVYMDIYGKHQKQIIDRAKEEFQELLLEYSELFYELELDAKP SKEKMGVIQDVLGEEQRFKALQKLQAERDALILKHIHFVYHPTKETCPSCPACVDAKIEHLISS RFIRPSDRNQKNSLSDPNIDRINLVILGKDGLARELANEIRALCTNDDKYVIDGKMYELSLRPI EGNVRLPVNSFQTPTFQPHGCLCLYNSKESLSYVVESIEKSRESTLGRRDNHLVHLPLTLILVN KRGDTSGETLHSLIQQGQQIASKLQCVFLDPASAGIGYGRNINEKQISQVLKGLLDSKRNLNLV SSTASIKDLADVDLRIVMCLMCGDPFSADDILSPVLQSQTCKSSHCGSSNSVLLELPIGVHKKR IELSVLSYHSSFSIRKSRLVHGYIVFYSAKRKASLAMLRAFLCEVQDIIPIQLVALTDGAIDVL DNDLSREQLTEGEEIAQEIDGRFTSIPCSQPQHKLELFHPFFKDVVEKKNIIEATHMYDNVAEA CSTTEEVFNSPRAGSPLCNSNLQDSEEDVEPPSYHLFREDATLPSLSKDHSKFSMELEGNDGLS FIMSNFESKLNNKVPPPVKPKPPVHFEITKDLSYLDQGHREGQRKSMSSSPWMPQDGFDPSDYA EPMDAVVKPRNEEENIYSVPHDSTQGKIITIRNINKAQSNGSGNGSDSEMDTSSLERGRKVSAV SKPVLYRTRCTRLGRFASYRTSFSVGSDDELGPIRKKEEDQASQGYKGDNAVIPYETDEDPRRR NILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTE GIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEA HKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLMRPD FSSMDALTATRSYQTIIELFIQQCPFFFYNRPISEPPGAAPGSPSAMAPTVPFLTSTPATSQPS PPQSPPPTPQSPMQPLLSSQLQAEHTL hide sequence

Ensembl Acc Id:

ENSRNOP00000021223 ⟸ ENSRNOT00000021223

Ensembl Acc Id:

ENSRNOP00000075649 ⟸ ENSRNOT00000090519

RefSeq Acc Id:	XP_038965966 ⟸ XM_039110038
- Peptide Label:	isoform X1
- UniProtKB:	P81128 (UniProtKB/Swiss-Prot), A0A0G2KB46 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063144132 ⟸ XM_063288062
- Peptide Label:	isoform X1
- UniProtKB:	P81128 (UniProtKB/Swiss-Prot), A0A0G2KB46 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063144136 ⟸ XM_063288066
- Peptide Label:	isoform X1
- UniProtKB:	P81128 (UniProtKB/Swiss-Prot), A0A0G2KB46 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000103520 ⟸ ENSRNOT00000166864

Protein Domains

FF pG1 pseudoGTPase pG2 pseudoGTPase Rho-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P81128-F1-model_v2	AlphaFold	P81128	1-1499	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689733

Promoter ID:

EPDNEW_R258

Type:

multiple initiation site

Name:

Arhgap35_1

Description:

Rho GTPase activating protein 35

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R259

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	78,572,988 - 78,573,048	EPDNEW

RGD ID:

13689734

Promoter ID:

EPDNEW_R259

Type:

multiple initiation site

Name:

Arhgap35_2

Description:

Rho GTPase activating protein 35

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R258

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	78,573,386 - 78,573,446	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308738	AgrOrtholog
BioCyc Gene	G2FUF-60607	BioCyc
Ensembl Genes	ENSRNOG00000015852	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000090519	ENTREZGENE
	ENSRNOT00000090519.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.10.440	UniProtKB/Swiss-Prot
	1.10.555.10	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
InterPro	FF_domain	UniProtKB/Swiss-Prot
	FF_domain_sf	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	pG1	UniProtKB/Swiss-Prot
	Rho-GAP_domain	UniProtKB/Swiss-Prot
	Rho_GTPase_activation_prot	UniProtKB/Swiss-Prot
	RhoGAP-FF1	UniProtKB/Swiss-Prot
	RhoGAP_dom	UniProtKB/Swiss-Prot
	RhoGAP_pG1_pG2	UniProtKB/Swiss-Prot
	RhoGAP_pG2	UniProtKB/Swiss-Prot
	Small_GTPase	UniProtKB/Swiss-Prot
KEGG Report	rno:306400	UniProtKB/Swiss-Prot
NCBI Gene	306400	ENTREZGENE
PANTHER	RHO GTPASE-ACTIVATING PROTEIN 190	UniProtKB/Swiss-Prot
	RHO GTPASE-ACTIVATING PROTEIN 35	UniProtKB/Swiss-Prot
Pfam	FF_RHG35_4th	UniProtKB/Swiss-Prot
	Ras	UniProtKB/Swiss-Prot
	RhoGAP	UniProtKB/Swiss-Prot
	RhoGAP-FF1	UniProtKB/Swiss-Prot
	RhoGAP_pG1_pG2	UniProtKB/Swiss-Prot
PhenoGen	Arhgap35	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/Swiss-Prot
PROSITE	PG1	UniProtKB/Swiss-Prot
	PG2	UniProtKB/Swiss-Prot
	PS51676	UniProtKB/Swiss-Prot
	RHOGAP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000015852	RatGTEx
SMART	RhoGAP	UniProtKB/Swiss-Prot
	SM00441	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48350	UniProtKB/Swiss-Prot
	SSF52540	UniProtKB/Swiss-Prot
	SSF81698	UniProtKB/Swiss-Prot
UniProt	A0A0G2KB46	ENTREZGENE
	A0ABK0LJ34_RAT	UniProtKB/TrEMBL
	P81128	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A0A0G2KB46	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Arhgap35	Rho GTPase activating protein 35	Grlf1	glucocorticoid receptor DNA binding factor 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-17	Grlf1	glucocorticoid receptor DNA binding factor 1	LOC686520	similar to Glucocorticoid receptor DNA-binding factor 1 (GAP-associated protein p190)	Data merged from RGD:1596377	1643240	APPROVED
2008-04-30	Grlf1	glucocorticoid receptor DNA binding factor 1	Grlf1_predicted	glucocorticoid receptor DNA binding factor 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-11-20	LOC686520	similar to Glucocorticoid receptor DNA-binding factor 1 (GAP-associated protein p190)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Grlf1_predicted	glucocorticoid receptor DNA binding factor 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)