Plbd1 (phospholipase B domain containing 1) - Rat Genome Database

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Gene: Plbd1 (phospholipase B domain containing 1) Rattus norvegicus
Analyze
Symbol: Plbd1
Name: phospholipase B domain containing 1
RGD ID: 1308734
Description: Predicted to enable aminopeptidase activity and phospholipase activity. Predicted to be involved in lysosomal protein catabolic process and phospholipid catabolic process. Predicted to be located in extracellular space and lysosome. Predicted to be active in extracellular region. Orthologous to human PLBD1 (phospholipase B domain containing 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LAMA-like protein 1; lamina ancestor homolog 1; LOC297694; phospholipase B domain-containing protein 1; phospholipase B-like 1; putative phospholipase B-like 1; RGD1308734; similar to RIKEN cDNA 1100001H23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,204,198 - 171,260,488 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4171,204,198 - 171,260,488 (-)EnsemblGRCr8
mRatBN7.24169,472,983 - 169,529,277 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,472,983 - 169,529,277 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4175,768,317 - 175,824,754 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,549,440 - 171,605,726 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,173,961 - 170,230,404 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,564,387 - 170,620,681 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,564,367 - 170,620,703 (-)Ensemblrn6Rnor6.0
Rnor_5.04234,823,110 - 234,879,736 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44173,611,465 - 173,667,759 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4158,056,782 - 158,113,069 (-)NCBICelera
RGSC_v3.14173,856,588 - 173,912,883 (-)NCBI
Cytogenetic Map4q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
clofibrate  (EXP,ISO)
clothianidin  (ISO)
cyproconazole  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
gefitinib  (ISO)
genistein  (ISO)
indole-3-methanol  (EXP)
inulin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lidocaine  (EXP)
menadione  (ISO)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
monosodium L-glutamate  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitrofen  (EXP)
omeprazole  (EXP)
ozone  (ISO)
panobinostat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
pirinixic acid  (EXP,ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (EXP)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
extracellular region  (IBA)
extracellular space  (IEA,ISO)
lysosome  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:22206666   PMID:25645918   PMID:25931508  


Genomics

Comparative Map Data
Plbd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,204,198 - 171,260,488 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4171,204,198 - 171,260,488 (-)EnsemblGRCr8
mRatBN7.24169,472,983 - 169,529,277 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,472,983 - 169,529,277 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4175,768,317 - 175,824,754 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,549,440 - 171,605,726 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,173,961 - 170,230,404 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,564,387 - 170,620,681 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,564,367 - 170,620,703 (-)Ensemblrn6Rnor6.0
Rnor_5.04234,823,110 - 234,879,736 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44173,611,465 - 173,667,759 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4158,056,782 - 158,113,069 (-)NCBICelera
RGSC_v3.14173,856,588 - 173,912,883 (-)NCBI
Cytogenetic Map4q43NCBI
PLBD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,503,661 - 14,567,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,503,660 - 14,567,913 (-)Ensemblhg38GRCh38
GRCh371214,656,595 - 14,720,817 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,547,864 - 14,612,058 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1219,801,692 - 19,865,899 (-)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1214,425,733 - 14,490,024 (-)NCBIHuRef
CHM1_11214,621,583 - 14,685,851 (-)NCBICHM1_1
T2T-CHM13v2.01214,381,172 - 14,445,388 (-)NCBIT2T-CHM13v2.0
Plbd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,589,069 - 136,639,301 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,589,068 - 136,638,926 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386136,612,071 - 136,662,303 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,612,070 - 136,661,928 (-)Ensemblmm10GRCm38
MGSCv376136,560,592 - 136,610,414 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366136,576,267 - 136,626,012 (-)NCBIMGSCv36mm8
Celera6139,609,300 - 139,657,957 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.59NCBI
Plbd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,266,696 - 11,326,055 (-)Ensembl
ChiLan1.0NW_00495541311,266,589 - 11,326,565 (-)NCBIChiLan1.0ChiLan1.0
PLBD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21019,954,390 - 20,018,571 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11219,951,150 - 20,015,331 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,509,377 - 14,573,087 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11214,905,980 - 14,970,004 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1214,905,980 - 14,969,902 (-)EnsemblpanPan2panpan1.1
PLBD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12732,031,073 - 32,081,910 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2732,030,824 - 32,081,918 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2714,367,131 - 14,417,748 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02732,338,338 - 32,390,483 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,337,820 - 32,390,387 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12732,227,208 - 32,279,318 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02732,185,940 - 32,237,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,098,538 - 14,149,153 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plbd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494593,141,422 - 93,190,991 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,869,006 - 2,918,511 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365872,869,059 - 2,918,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLBD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl557,948,779 - 58,022,058 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1557,950,872 - 58,022,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,337,117 - 61,373,382 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLBD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,397,766 - 14,468,292 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,397,877 - 14,468,125 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606920,843,944 - 20,913,707 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plbd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,422,716 - 23,468,087 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475223,408,510 - 23,468,477 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Plbd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1612,795,783 - 12,854,406 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plbd1
320 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000011930
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
RH142355  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,473,094 - 169,473,254 (+)MAPPERmRatBN7.2
Rnor_6.04170,564,499 - 170,564,658NCBIRnor6.0
Rnor_5.04234,823,222 - 234,823,381UniSTSRnor5.0
RGSC_v3.44173,611,577 - 173,611,736UniSTSRGSC3.4
Celera4158,056,894 - 158,057,053UniSTS
RH 3.4 Map41028.9UniSTS
Cytogenetic Map4q43UniSTS
RH128584  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84171,204,371 - 171,204,823 (+)Marker Load Pipeline
mRatBN7.24169,473,156 - 169,473,608 (+)MAPPERmRatBN7.2
Rnor_6.04170,564,561 - 170,565,012NCBIRnor6.0
Rnor_5.04234,823,284 - 234,823,735UniSTSRnor5.0
RGSC_v3.44173,611,639 - 173,612,090UniSTSRGSC3.4
Celera4158,056,956 - 158,057,407UniSTS
Cytogenetic Map4q43UniSTS
BM385394  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,474,102 - 169,474,253 (+)MAPPERmRatBN7.2
Rnor_6.04170,565,507 - 170,565,657NCBIRnor6.0
Rnor_5.04234,824,230 - 234,824,380UniSTSRnor5.0
RGSC_v3.44173,612,585 - 173,612,735UniSTSRGSC3.4
Celera4158,057,902 - 158,058,052UniSTS
RH 3.4 Map41029.8UniSTS
Cytogenetic Map4q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 156 91 90 59 92 59 6 356 192 11 135 81 92 31 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000011930   ⟹   ENSRNOP00000011930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,204,198 - 171,260,488 (-)Ensembl
mRatBN7.2 Ensembl4169,472,983 - 169,529,277 (-)Ensembl
Rnor_6.0 Ensembl4170,564,367 - 170,620,703 (-)Ensembl
RefSeq Acc Id: NM_001013927   ⟹   NP_001013949
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,204,198 - 171,260,488 (-)NCBI
mRatBN7.24169,472,983 - 169,529,277 (-)NCBI
Rnor_6.04170,564,387 - 170,620,681 (-)NCBI
Rnor_5.04234,823,110 - 234,879,736 (-)NCBI
RGSC_v3.44173,611,465 - 173,667,759 (-)RGD
Celera4158,056,782 - 158,113,069 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013949 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85851 (Get FASTA)   NCBI Sequence Viewer  
  EDM01609 (Get FASTA)   NCBI Sequence Viewer  
  EDM01610 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011930
  ENSRNOP00000011930.5
GenBank Protein Q5U2V4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013949   ⟸   NM_001013927
- Peptide Label: precursor
- UniProtKB: Q5U2V4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011930   ⟸   ENSRNOT00000011930

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2V4-F1-model_v2 AlphaFold Q5U2V4 1-550 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693463
Promoter ID:EPDNEW_R3988
Type:multiple initiation site
Name:Plbd1_1
Description:phospholipase B domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04170,620,511 - 170,620,571EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308734 AgrOrtholog
BioCyc Gene G2FUF-42600 BioCyc
Ensembl Genes ENSRNOG00000008933 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011930 ENTREZGENE
  ENSRNOT00000011930.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.439.20 UniProtKB/Swiss-Prot
  2.10.70.60 UniProtKB/Swiss-Prot
  3.60.60.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7189866 IMAGE-MGC_LOAD
InterPro PLipase_B-like UniProtKB/Swiss-Prot
  PLipase_B-like_dom1 UniProtKB/Swiss-Prot
  PLipase_B-like_dom2 UniProtKB/Swiss-Prot
  PLipase_B-like_dom3 UniProtKB/Swiss-Prot
KEGG Report rno:297694 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94571 IMAGE-MGC_LOAD
NCBI Gene 297694 ENTREZGENE
PANTHER PHOSPHOLIPASE B-LIKE 1 UniProtKB/Swiss-Prot
  PTHR12370 UniProtKB/Swiss-Prot
Pfam Phospholip_B UniProtKB/Swiss-Prot
PhenoGen Plbd1 PhenoGen
RatGTEx ENSRNOG00000008933 RatGTEx
UniProt PLBL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-12 Plbd1  phospholipase B domain containing 1  RGD1308734  similar to RIKEN cDNA 1100001H23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308734  similar to RIKEN cDNA 1100001H23  RGD1308734_predicted  similar to RIKEN cDNA 1100001H23 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308734_predicted  similar to RIKEN cDNA 1100001H23 (predicted)  LOC297694_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC297694_predicted  similar to RIKEN cDNA 1100001H23 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL